Wall clock time and date at job start Mon Mar 30 2020 00:56:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52999 * 109.47493 * 2 1
4 4 C 1.50701 * 109.47468 * 179.97438 * 3 2 1
5 5 N 1.27742 * 124.89325 * 89.96972 * 4 3 2
6 6 N 1.37793 * 116.43917 * 180.02562 * 5 4 3
7 7 H 0.97001 * 122.86507 * 180.27472 * 6 5 4
8 8 C 1.34682 * 114.27485 * 0.02562 * 6 5 4
9 9 N 1.32858 * 125.76221 * 180.02562 * 8 6 5
10 10 C 1.34260 * 119.99999 * 353.41956 * 9 8 6
11 11 O 1.35368 * 119.99977 * 184.59129 * 10 9 8
12 12 N 1.31044 * 120.00041 * 4.59154 * 10 9 8
13 13 C 1.46503 * 119.99997 * 184.63656 * 12 10 9
14 14 C 1.50702 * 109.47125 * 114.46298 * 13 12 10
15 15 H 1.08001 * 120.00051 * 359.97438 * 14 13 12
16 16 C 1.37875 * 119.99777 * 180.02562 * 14 13 12
17 17 N 1.31512 * 120.00437 * 359.97438 * 16 14 13
18 18 Si 1.86804 * 119.99652 * 179.97438 * 16 14 13
19 19 H 1.48494 * 109.47472 * 59.99469 * 18 16 14
20 20 H 1.48498 * 109.46808 * 179.97438 * 18 16 14
21 21 H 1.48506 * 109.46889 * 299.99451 * 18 16 14
22 22 S 1.75907 * 124.89605 * 270.00397 * 4 3 2
23 23 H 1.09001 * 109.47799 * 180.02562 * 1 2 3
24 24 H 1.09007 * 109.47138 * 300.00431 * 1 2 3
25 25 H 1.09006 * 109.46933 * 59.99729 * 1 2 3
26 26 H 1.08999 * 109.47436 * 239.99357 * 2 1 3
27 27 H 1.09000 * 109.47000 * 119.99817 * 2 1 3
28 28 H 1.09002 * 109.46849 * 59.99874 * 3 2 1
29 29 H 1.09000 * 109.46848 * 299.99910 * 3 2 1
30 30 H 0.96696 * 114.00030 * 175.19269 * 11 10 9
31 31 H 1.09005 * 109.47209 * 234.45964 * 13 12 10
32 32 H 1.08996 * 109.47091 * 354.45678 * 13 12 10
33 33 H 0.96997 * 120.00295 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5470 1.4425 0.0006
5 7 4.2782 1.4417 -1.0468
6 7 5.6411 1.4413 -0.8437
7 1 6.2819 1.4447 -1.5719
8 6 6.0077 1.4412 0.4523
9 7 7.2565 1.4413 0.9059
10 6 8.2818 1.3083 0.0495
11 8 9.5481 1.2149 0.5190
12 7 8.0569 1.2688 -1.2409
13 6 9.1624 1.0221 -2.1700
14 6 8.9493 -0.2980 -2.8650
15 1 8.0778 -0.8938 -2.6371
16 6 9.8676 -0.7456 -3.7910
17 7 10.9291 -0.0204 -4.0682
18 14 9.6038 -2.3823 -4.6520
19 1 8.3242 -2.3452 -5.4045
20 1 10.7243 -2.6323 -5.5939
21 1 9.5530 -3.4701 -3.6424
22 16 4.5528 1.4426 1.4438
23 1 -0.3635 -1.0276 0.0005
24 1 -0.3634 0.5139 0.8900
25 1 -0.3633 0.5139 -0.8900
26 1 1.8933 -0.5139 -0.8899
27 1 1.8933 -0.5138 0.8900
28 1 1.6767 1.9563 0.8900
29 1 1.6767 1.9563 -0.8900
30 1 10.2102 1.0485 -0.1658
31 1 9.1996 1.8209 -2.9108
32 1 10.1018 0.9946 -1.6178
33 1 11.5748 -0.3351 -4.7199
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000331139214.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:56:04
Heat of formation + Delta-G solvation = 30.689470 kcal
Electronic energy + Delta-G solvation = -17840.275893 eV
Core-core repulsion = 14835.545052 eV
Total energy + Delta-G solvation = -3004.730841 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.089 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.56128 -40.18736 -37.33796 -35.75455 -35.58538 -33.59627 -32.20540 -29.27174
-28.37600 -26.60144 -24.60485 -23.03431 -22.57360 -21.15168 -20.04964 -19.15723
-18.67637 -17.96608 -16.89359 -16.84110 -16.50280 -15.79047 -15.74033 -15.37209
-15.12968 -14.44644 -14.17977 -13.93073 -13.77801 -13.14347 -13.04279 -13.00491
-12.78419 -12.52305 -12.37355 -12.01790 -11.92621 -11.81629 -11.48316 -11.02848
-10.95487 -10.83536 -10.49012 -10.41214 -8.94591 -8.31174 -6.48829 -0.58903
-0.33607 0.15906 0.56297 1.32931 1.35503 1.44366 1.49571 2.03116
2.30580 2.36897 2.96658 3.34988 3.63698 3.97299 4.12076 4.23564
4.38803 4.66321 4.80552 4.85414 4.87281 5.02041 5.10319 5.32666
5.36126 5.48722 5.54623 5.58103 5.92188 5.99461 6.39223 6.42958
6.63906 7.17576 7.35584 8.74326
Molecular weight = 270.09amu
Principal moments of inertia in cm(-1)
A = 0.019324 B = 0.004798 C = 0.004026
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1448.632023 B = 5833.858849 C = 6953.578931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.123 4.123
3 C -0.035 4.035
4 C 0.068 3.932
5 N -0.262 5.262
6 N -0.502 5.502
7 H 0.453 0.547
8 C 0.341 3.659
9 N -0.554 5.554
10 C 0.510 3.490
11 O -0.513 6.513
12 N -0.665 5.665
13 C 0.204 3.796
14 C -0.539 4.539
15 H 0.048 0.952
16 C 0.013 3.987
17 N -0.922 5.922
18 Si 0.972 3.028
19 H -0.269 1.269
20 H -0.273 1.273
21 H -0.271 1.271
22 S 0.212 5.788
23 H 0.058 0.942
24 H 0.073 0.927
25 H 0.060 0.940
26 H 0.052 0.948
27 H 0.073 0.927
28 H 0.133 0.867
29 H 0.113 0.887
30 H 0.415 0.585
31 H 0.016 0.984
32 H -0.008 1.008
33 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.016 2.066 10.769 24.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.163 4.163
3 C -0.077 4.077
4 C -0.233 4.233
5 N -0.077 5.077
6 N -0.247 5.247
7 H 0.319 0.681
8 C -0.041 4.041
9 N -0.302 5.302
10 C 0.193 3.807
11 O -0.312 6.312
12 N -0.417 5.417
13 C 0.075 3.925
14 C -0.577 4.577
15 H 0.066 0.934
16 C -0.187 4.187
17 N -0.561 5.561
18 Si 0.796 3.204
19 H -0.194 1.194
20 H -0.198 1.198
21 H -0.196 1.196
22 S 0.445 5.555
23 H 0.077 0.923
24 H 0.092 0.908
25 H 0.079 0.921
26 H 0.071 0.929
27 H 0.092 0.908
28 H 0.151 0.849
29 H 0.131 0.869
30 H 0.276 0.724
31 H 0.034 0.966
32 H 0.009 0.991
33 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -22.330 2.312 11.584 25.262
hybrid contribution 2.577 -0.858 -2.607 3.765
sum -19.753 1.454 8.977 21.746
Atomic orbital electron populations
1.21732 0.93161 1.02550 1.03064 1.21580 0.97702 0.94168 1.02805
1.20731 0.79164 1.00251 1.07527 1.29031 1.03431 1.00478 0.90330
1.73703 0.89851 1.17364 1.26763 1.49216 1.03724 1.63418 1.08363
0.68126 1.26359 0.98988 0.91416 0.87315 1.69064 0.93449 1.38094
1.29569 1.21461 0.84188 0.89094 0.85958 1.84525 1.15897 1.87823
1.42977 1.71796 1.36136 1.32098 1.01697 1.19173 0.86829 0.96203
0.90246 1.21289 1.08087 1.04379 1.23931 0.93351 1.25875 0.94387
1.01539 0.96921 1.70023 1.12055 1.39718 1.34331 0.85404 0.78162
0.78607 0.78267 1.19443 1.19789 1.19600 1.85391 0.86930 1.79456
1.03679 0.92320 0.90801 0.92066 0.92888 0.90780 0.84932 0.86898
0.72408 0.96571 0.99078 0.92054
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.01 9.91 71.98 0.71 -0.30 16
2 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16
3 C -0.04 -0.36 5.82 29.85 0.17 -0.18 16
4 C 0.07 1.36 6.85 88.70 0.61 1.97 16
5 N -0.26 -7.67 11.97 -48.81 -0.58 -8.25 16
6 N -0.50 -18.58 6.59 -57.22 -0.38 -18.96 16
7 H 0.45 19.72 5.61 -214.83 -1.21 18.52 16
8 C 0.34 12.08 8.23 179.68 1.48 13.55 16
9 N -0.55 -23.20 10.62 -312.24 -3.32 -26.51 16
10 C 0.51 24.07 8.74 180.35 1.58 25.64 16
11 O -0.51 -23.36 13.62 -86.59 -1.18 -24.54 16
12 N -0.67 -33.22 6.78 -470.80 -3.19 -36.41 16
13 C 0.20 11.37 6.06 85.63 0.52 11.89 16
14 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16
15 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16
16 C 0.01 0.73 5.46 84.65 0.46 1.19 16
17 N -0.92 -54.82 13.29 21.45 0.28 -54.53 16
18 Si 0.97 44.84 29.54 68.60 2.03 46.87 16
19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
22 S 0.21 4.55 23.36 -56.49 -1.32 3.23 16
23 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16
24 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16
25 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16
26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16
27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
28 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16
29 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16
30 H 0.41 18.14 5.88 -74.06 -0.44 17.70 16
31 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16
32 H -0.01 -0.45 5.27 -2.39 -0.01 -0.46 16
33 H 0.27 15.04 8.31 -92.71 -0.77 14.26 16
Total: -1.00 -72.23 301.48 -2.19 -74.42
By element:
Atomic # 1 Polarization: 24.09 SS G_CDS: -0.48 Total: 23.60 kcal
Atomic # 6 Polarization: 15.14 SS G_CDS: 5.95 Total: 21.10 kcal
Atomic # 7 Polarization: -137.49 SS G_CDS: -7.19 Total: -144.68 kcal
Atomic # 8 Polarization: -23.36 SS G_CDS: -1.18 Total: -24.54 kcal
Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal
Atomic # 16 Polarization: 4.55 SS G_CDS: -1.32 Total: 3.23 kcal
Total: -72.23 -2.19 -74.42 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331139214.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.108 kcal
(2) G-P(sol) polarization free energy of solvation -72.231 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.877 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.418 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.689 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds