Wall clock time and date at job start Mon Mar 30 2020 00:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47493 * 2 1 4 4 C 1.50701 * 109.47468 * 179.97438 * 3 2 1 5 5 N 1.27742 * 124.89325 * 89.96972 * 4 3 2 6 6 N 1.37793 * 116.43917 * 180.02562 * 5 4 3 7 7 H 0.97001 * 122.86507 * 180.27472 * 6 5 4 8 8 C 1.34682 * 114.27485 * 0.02562 * 6 5 4 9 9 N 1.32858 * 125.76221 * 180.02562 * 8 6 5 10 10 C 1.34260 * 119.99999 * 353.41956 * 9 8 6 11 11 O 1.35368 * 119.99977 * 184.59129 * 10 9 8 12 12 N 1.31044 * 120.00041 * 4.59154 * 10 9 8 13 13 C 1.46503 * 119.99997 * 184.63656 * 12 10 9 14 14 C 1.50702 * 109.47125 * 114.46298 * 13 12 10 15 15 H 1.08001 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99777 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00437 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99652 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47472 * 59.99469 * 18 16 14 20 20 H 1.48498 * 109.46808 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46889 * 299.99451 * 18 16 14 22 22 S 1.75907 * 124.89605 * 270.00397 * 4 3 2 23 23 H 1.09001 * 109.47799 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47138 * 300.00431 * 1 2 3 25 25 H 1.09006 * 109.46933 * 59.99729 * 1 2 3 26 26 H 1.08999 * 109.47436 * 239.99357 * 2 1 3 27 27 H 1.09000 * 109.47000 * 119.99817 * 2 1 3 28 28 H 1.09002 * 109.46849 * 59.99874 * 3 2 1 29 29 H 1.09000 * 109.46848 * 299.99910 * 3 2 1 30 30 H 0.96696 * 114.00030 * 175.19269 * 11 10 9 31 31 H 1.09005 * 109.47209 * 234.45964 * 13 12 10 32 32 H 1.08996 * 109.47091 * 354.45678 * 13 12 10 33 33 H 0.96997 * 120.00295 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2782 1.4417 -1.0468 6 7 5.6411 1.4413 -0.8437 7 1 6.2819 1.4447 -1.5719 8 6 6.0077 1.4412 0.4523 9 7 7.2565 1.4413 0.9059 10 6 8.2818 1.3083 0.0495 11 8 9.5481 1.2149 0.5190 12 7 8.0569 1.2688 -1.2409 13 6 9.1624 1.0221 -2.1700 14 6 8.9493 -0.2980 -2.8650 15 1 8.0778 -0.8938 -2.6371 16 6 9.8676 -0.7456 -3.7910 17 7 10.9291 -0.0204 -4.0682 18 14 9.6038 -2.3823 -4.6520 19 1 8.3242 -2.3452 -5.4045 20 1 10.7243 -2.6323 -5.5939 21 1 9.5530 -3.4701 -3.6424 22 16 4.5528 1.4426 1.4438 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 10.2102 1.0485 -0.1658 31 1 9.1996 1.8209 -2.9108 32 1 10.1018 0.9946 -1.6178 33 1 11.5748 -0.3351 -4.7199 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331139214.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:04 Heat of formation + Delta-G solvation = 30.689470 kcal Electronic energy + Delta-G solvation = -17840.275893 eV Core-core repulsion = 14835.545052 eV Total energy + Delta-G solvation = -3004.730841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.56128 -40.18736 -37.33796 -35.75455 -35.58538 -33.59627 -32.20540 -29.27174 -28.37600 -26.60144 -24.60485 -23.03431 -22.57360 -21.15168 -20.04964 -19.15723 -18.67637 -17.96608 -16.89359 -16.84110 -16.50280 -15.79047 -15.74033 -15.37209 -15.12968 -14.44644 -14.17977 -13.93073 -13.77801 -13.14347 -13.04279 -13.00491 -12.78419 -12.52305 -12.37355 -12.01790 -11.92621 -11.81629 -11.48316 -11.02848 -10.95487 -10.83536 -10.49012 -10.41214 -8.94591 -8.31174 -6.48829 -0.58903 -0.33607 0.15906 0.56297 1.32931 1.35503 1.44366 1.49571 2.03116 2.30580 2.36897 2.96658 3.34988 3.63698 3.97299 4.12076 4.23564 4.38803 4.66321 4.80552 4.85414 4.87281 5.02041 5.10319 5.32666 5.36126 5.48722 5.54623 5.58103 5.92188 5.99461 6.39223 6.42958 6.63906 7.17576 7.35584 8.74326 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.004798 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.632023 B = 5833.858849 C = 6953.578931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.035 4.035 4 C 0.068 3.932 5 N -0.262 5.262 6 N -0.502 5.502 7 H 0.453 0.547 8 C 0.341 3.659 9 N -0.554 5.554 10 C 0.510 3.490 11 O -0.513 6.513 12 N -0.665 5.665 13 C 0.204 3.796 14 C -0.539 4.539 15 H 0.048 0.952 16 C 0.013 3.987 17 N -0.922 5.922 18 Si 0.972 3.028 19 H -0.269 1.269 20 H -0.273 1.273 21 H -0.271 1.271 22 S 0.212 5.788 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.415 0.585 31 H 0.016 0.984 32 H -0.008 1.008 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.016 2.066 10.769 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.077 4.077 4 C -0.233 4.233 5 N -0.077 5.077 6 N -0.247 5.247 7 H 0.319 0.681 8 C -0.041 4.041 9 N -0.302 5.302 10 C 0.193 3.807 11 O -0.312 6.312 12 N -0.417 5.417 13 C 0.075 3.925 14 C -0.577 4.577 15 H 0.066 0.934 16 C -0.187 4.187 17 N -0.561 5.561 18 Si 0.796 3.204 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.196 1.196 22 S 0.445 5.555 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.131 0.869 30 H 0.276 0.724 31 H 0.034 0.966 32 H 0.009 0.991 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.330 2.312 11.584 25.262 hybrid contribution 2.577 -0.858 -2.607 3.765 sum -19.753 1.454 8.977 21.746 Atomic orbital electron populations 1.21732 0.93161 1.02550 1.03064 1.21580 0.97702 0.94168 1.02805 1.20731 0.79164 1.00251 1.07527 1.29031 1.03431 1.00478 0.90330 1.73703 0.89851 1.17364 1.26763 1.49216 1.03724 1.63418 1.08363 0.68126 1.26359 0.98988 0.91416 0.87315 1.69064 0.93449 1.38094 1.29569 1.21461 0.84188 0.89094 0.85958 1.84525 1.15897 1.87823 1.42977 1.71796 1.36136 1.32098 1.01697 1.19173 0.86829 0.96203 0.90246 1.21289 1.08087 1.04379 1.23931 0.93351 1.25875 0.94387 1.01539 0.96921 1.70023 1.12055 1.39718 1.34331 0.85404 0.78162 0.78607 0.78267 1.19443 1.19789 1.19600 1.85391 0.86930 1.79456 1.03679 0.92320 0.90801 0.92066 0.92888 0.90780 0.84932 0.86898 0.72408 0.96571 0.99078 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 71.98 0.71 -0.30 16 2 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 3 C -0.04 -0.36 5.82 29.85 0.17 -0.18 16 4 C 0.07 1.36 6.85 88.70 0.61 1.97 16 5 N -0.26 -7.67 11.97 -48.81 -0.58 -8.25 16 6 N -0.50 -18.58 6.59 -57.22 -0.38 -18.96 16 7 H 0.45 19.72 5.61 -214.83 -1.21 18.52 16 8 C 0.34 12.08 8.23 179.68 1.48 13.55 16 9 N -0.55 -23.20 10.62 -312.24 -3.32 -26.51 16 10 C 0.51 24.07 8.74 180.35 1.58 25.64 16 11 O -0.51 -23.36 13.62 -86.59 -1.18 -24.54 16 12 N -0.67 -33.22 6.78 -470.80 -3.19 -36.41 16 13 C 0.20 11.37 6.06 85.63 0.52 11.89 16 14 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 15 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 16 C 0.01 0.73 5.46 84.65 0.46 1.19 16 17 N -0.92 -54.82 13.29 21.45 0.28 -54.53 16 18 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 S 0.21 4.55 23.36 -56.49 -1.32 3.23 16 23 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 25 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.41 18.14 5.88 -74.06 -0.44 17.70 16 31 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 32 H -0.01 -0.45 5.27 -2.39 -0.01 -0.46 16 33 H 0.27 15.04 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -72.23 301.48 -2.19 -74.42 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.48 Total: 23.60 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 5.95 Total: 21.10 kcal Atomic # 7 Polarization: -137.49 SS G_CDS: -7.19 Total: -144.68 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -1.18 Total: -24.54 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.32 Total: 3.23 kcal Total: -72.23 -2.19 -74.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331139214.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.108 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds