Wall clock time and date at job start Mon Mar 30 2020 01:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38330 * 120.03606 * 2 1 4 4 F 1.35105 * 119.99634 * 0.02562 * 3 2 1 5 5 C 1.38656 * 120.00055 * 180.25744 * 3 2 1 6 6 F 1.35105 * 119.96546 * 179.76544 * 5 3 2 7 7 C 1.38423 * 120.06790 * 359.49033 * 5 3 2 8 8 C 1.38130 * 120.07149 * 0.22964 * 7 5 3 9 9 C 1.38805 * 120.03243 * 179.72857 * 2 1 3 10 10 N 1.40052 * 120.03392 * 359.96885 * 9 2 1 11 11 C 1.34779 * 119.99545 * 145.30428 * 10 9 2 12 12 O 1.21585 * 120.00129 * 4.50470 * 11 10 9 13 13 N 1.34779 * 119.99834 * 184.50025 * 11 10 9 14 14 C 1.46502 * 119.99740 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46883 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00064 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00103 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00322 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99865 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46901 * 90.00231 * 19 17 15 21 21 H 1.48496 * 109.47068 * 209.99926 * 19 17 15 22 22 H 1.48499 * 109.47341 * 330.00222 * 19 17 15 23 23 H 1.09001 * 109.47396 * 270.27639 * 1 2 3 24 24 H 1.08999 * 109.47146 * 30.27609 * 1 2 3 25 25 H 1.09000 * 109.47148 * 150.27340 * 1 2 3 26 26 H 1.08003 * 119.96507 * 180.25971 * 7 5 3 27 27 H 1.07997 * 120.00370 * 180.02562 * 8 7 5 28 28 H 0.96998 * 120.00248 * 325.30777 * 10 9 2 29 29 H 0.96998 * 119.99839 * 0.02562 * 13 11 10 30 30 H 1.08993 * 109.47407 * 300.00005 * 14 13 11 31 31 H 1.09006 * 109.46788 * 60.00671 * 14 13 11 32 32 H 0.96992 * 120.00176 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1975 0.0000 4 9 1.5246 2.3680 0.0005 5 6 3.5860 1.1967 -0.0054 6 9 4.2615 2.3667 -0.0102 7 6 4.2788 -0.0017 -0.0001 8 6 3.5903 -1.1992 0.0057 9 6 2.2017 -1.2017 0.0057 10 7 1.5029 -2.4154 0.0121 11 6 1.9980 -3.4815 -0.6472 12 8 3.0896 -3.4145 -1.1785 13 7 1.2832 -4.6219 -0.7175 14 6 1.8212 -5.7806 -1.4347 15 6 0.8345 -6.9175 -1.3641 16 1 -0.1000 -6.7896 -0.8381 17 6 1.1248 -8.1209 -1.9711 18 7 0.2635 -9.1130 -1.9099 19 14 2.7415 -8.3424 -2.8804 20 1 3.7723 -8.8513 -1.9404 21 1 2.5576 -9.3149 -3.9873 22 1 3.1797 -7.0369 -3.4361 23 1 -0.3634 0.0050 1.0276 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3633 -0.8924 -0.5096 26 1 5.3588 -0.0004 -0.0001 27 1 4.1320 -2.1335 0.0102 28 1 0.6625 -2.4886 0.4910 29 1 0.4122 -4.6752 -0.2940 30 1 1.9950 -5.5141 -2.4772 31 1 2.7614 -6.0871 -0.9763 32 1 0.4679 -9.9597 -2.3366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335606704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:02 Heat of formation + Delta-G solvation = -94.703244 kcal Electronic energy + Delta-G solvation = -19830.762204 eV Core-core repulsion = 16234.460789 eV Total energy + Delta-G solvation = -3596.301415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.53191 -48.60443 -40.59898 -38.52911 -34.77884 -34.45204 -32.68161 -32.43992 -29.52363 -27.90653 -27.02683 -23.49990 -22.29561 -21.78315 -20.61051 -18.81169 -18.26344 -17.39095 -17.01696 -16.51469 -16.35614 -15.96978 -15.18603 -15.03719 -14.74174 -14.52665 -14.32612 -13.80038 -13.69859 -13.37540 -13.20530 -13.05281 -12.55351 -12.41277 -12.14598 -11.93432 -11.44169 -11.08207 -10.85660 -10.26456 -10.03914 -9.80108 -9.57081 -8.93987 -8.87638 -8.45961 -8.02673 -6.28702 -4.32085 0.82175 0.86609 2.75336 3.12006 3.22014 3.29666 3.36574 3.57533 3.71946 4.22920 4.26702 4.42407 4.57343 4.70001 4.79118 5.06674 5.21674 5.26311 5.32145 5.57238 5.71671 5.84171 6.00014 6.10645 6.34145 6.54733 6.79161 6.96533 7.00540 7.14478 7.33569 8.12315 8.42597 8.67790 8.85652 9.30348 10.83050 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038473 B = 0.003822 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.601646 B = 7324.529050 C = 7904.212098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.130 4.130 3 C 0.083 3.917 4 F -0.128 7.128 5 C 0.044 3.956 6 F -0.134 7.134 7 C -0.111 4.111 8 C -0.099 4.099 9 C 0.199 3.801 10 N -0.689 5.689 11 C 0.693 3.307 12 O -0.582 6.582 13 N -0.711 5.711 14 C 0.237 3.763 15 C -0.547 4.547 16 H 0.080 0.920 17 C 0.079 3.921 18 N -0.890 5.890 19 Si 0.877 3.123 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.260 1.260 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.147 0.853 27 H 0.161 0.839 28 H 0.408 0.592 29 H 0.396 0.604 30 H 0.027 0.973 31 H 0.022 0.978 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 18.160 5.842 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.134 4.134 3 C 0.062 3.938 4 F -0.107 7.107 5 C 0.023 3.977 6 F -0.113 7.113 7 C -0.130 4.130 8 C -0.120 4.120 9 C 0.101 3.899 10 N -0.337 5.337 11 C 0.394 3.606 12 O -0.461 6.461 13 N -0.363 5.363 14 C 0.115 3.885 15 C -0.585 4.585 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.527 5.527 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.184 1.184 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.165 0.835 27 H 0.179 0.821 28 H 0.244 0.756 29 H 0.229 0.771 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.161 17.937 5.241 18.952 hybrid contribution -0.075 0.098 -0.089 0.152 sum 3.086 18.035 5.152 19.009 Atomic orbital electron populations 1.20682 0.89222 1.04077 1.03069 1.19475 0.97373 0.89987 1.06567 1.17059 0.87995 0.81621 1.07147 1.91495 1.79962 1.45141 1.94078 1.17585 0.88154 0.82565 1.09419 1.91501 1.79779 1.45606 1.94371 1.20970 1.01219 0.89728 1.01099 1.21394 0.92604 0.99318 0.98686 1.17082 0.90905 0.83928 0.97977 1.42761 1.26746 1.08981 1.55168 1.16097 0.84681 0.80315 0.79549 1.90875 1.20533 1.82758 1.51884 1.45468 1.21572 1.11778 1.57459 1.19469 0.95190 0.82099 0.91781 1.21046 1.04845 0.95618 1.36954 0.90200 1.24771 0.97060 0.95334 0.95334 1.69870 1.35549 1.03670 1.43647 0.86818 0.83776 0.79008 0.80097 1.19777 1.20842 1.18435 0.90405 0.90583 0.90511 0.83486 0.82114 0.75556 0.77058 0.95527 0.95964 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.29 36.01 0.33 -0.67 16 2 C -0.13 -1.50 5.90 -104.38 -0.62 -2.11 16 3 C 0.08 1.02 7.24 -39.39 -0.29 0.73 16 4 F -0.13 -1.60 16.39 2.25 0.04 -1.57 16 5 C 0.04 0.54 7.30 -39.36 -0.29 0.26 16 6 F -0.13 -1.72 17.18 2.25 0.04 -1.68 16 7 C -0.11 -1.29 10.02 -39.55 -0.40 -1.68 16 8 C -0.10 -1.32 8.70 -39.39 -0.34 -1.66 16 9 C 0.20 2.57 6.29 -83.66 -0.53 2.04 16 10 N -0.69 -8.88 4.76 -14.21 -0.07 -8.95 16 11 C 0.69 12.13 8.41 -86.91 -0.73 11.40 16 12 O -0.58 -12.12 13.76 5.29 0.07 -12.05 16 13 N -0.71 -13.15 5.55 -66.41 -0.37 -13.52 16 14 C 0.24 5.47 4.50 -5.19 -0.02 5.45 16 15 C -0.55 -14.29 9.83 -34.44 -0.34 -14.63 16 16 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 17 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 19 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.66 7.65 -51.93 -0.40 0.26 16 25 H 0.08 0.65 7.17 -51.93 -0.37 0.28 16 26 H 0.15 1.37 8.06 -52.48 -0.42 0.94 16 27 H 0.16 2.37 6.19 -52.49 -0.33 2.05 16 28 H 0.41 3.91 7.86 -40.82 -0.32 3.59 16 29 H 0.40 6.26 8.34 -40.82 -0.34 5.92 16 30 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 31 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 32 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 287.09 15.07 4.33 4.33 Total: -1.00 -30.57 287.09 -6.11 -36.68 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -2.95 Total: 4.47 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -3.31 Total: 1.19 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.34 Total: -47.35 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.08 Total: -3.25 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.57 -6.11 -36.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335606704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.022 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds