Wall clock time and date at job start Mon Mar 30 2020 01:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38330 * 120.03606 * 2 1 4 4 F 1.35105 * 119.99634 * 0.02562 * 3 2 1 5 5 C 1.38656 * 120.00055 * 180.25744 * 3 2 1 6 6 F 1.35105 * 119.96546 * 179.76544 * 5 3 2 7 7 C 1.38423 * 120.06790 * 359.49033 * 5 3 2 8 8 C 1.38130 * 120.07149 * 0.22964 * 7 5 3 9 9 C 1.38805 * 120.03243 * 179.72857 * 2 1 3 10 10 N 1.40052 * 120.03392 * 359.96885 * 9 2 1 11 11 C 1.34779 * 119.99545 * 145.30428 * 10 9 2 12 12 O 1.21585 * 120.00129 * 4.50470 * 11 10 9 13 13 N 1.34779 * 119.99834 * 184.50025 * 11 10 9 14 14 C 1.46502 * 119.99740 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46883 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00064 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00103 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00322 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99865 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46901 * 90.00231 * 19 17 15 21 21 H 1.48496 * 109.47068 * 209.99926 * 19 17 15 22 22 H 1.48499 * 109.47341 * 330.00222 * 19 17 15 23 23 H 1.09001 * 109.47396 * 270.27639 * 1 2 3 24 24 H 1.08999 * 109.47146 * 30.27609 * 1 2 3 25 25 H 1.09000 * 109.47148 * 150.27340 * 1 2 3 26 26 H 1.08003 * 119.96507 * 180.25971 * 7 5 3 27 27 H 1.07997 * 120.00370 * 180.02562 * 8 7 5 28 28 H 0.96998 * 120.00248 * 325.30777 * 10 9 2 29 29 H 0.96998 * 119.99839 * 0.02562 * 13 11 10 30 30 H 1.08993 * 109.47407 * 300.00005 * 14 13 11 31 31 H 1.09006 * 109.46788 * 60.00671 * 14 13 11 32 32 H 0.96992 * 120.00176 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1975 0.0000 4 9 1.5246 2.3680 0.0005 5 6 3.5860 1.1967 -0.0054 6 9 4.2615 2.3667 -0.0102 7 6 4.2788 -0.0017 -0.0001 8 6 3.5903 -1.1992 0.0057 9 6 2.2017 -1.2017 0.0057 10 7 1.5029 -2.4154 0.0121 11 6 1.9980 -3.4815 -0.6472 12 8 3.0896 -3.4145 -1.1785 13 7 1.2832 -4.6219 -0.7175 14 6 1.8212 -5.7806 -1.4347 15 6 0.8345 -6.9175 -1.3641 16 1 -0.1000 -6.7896 -0.8381 17 6 1.1248 -8.1209 -1.9711 18 7 0.2635 -9.1130 -1.9099 19 14 2.7415 -8.3424 -2.8804 20 1 3.7723 -8.8513 -1.9404 21 1 2.5576 -9.3149 -3.9873 22 1 3.1797 -7.0369 -3.4361 23 1 -0.3634 0.0050 1.0276 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3633 -0.8924 -0.5096 26 1 5.3588 -0.0004 -0.0001 27 1 4.1320 -2.1335 0.0102 28 1 0.6625 -2.4886 0.4910 29 1 0.4122 -4.6752 -0.2940 30 1 1.9950 -5.5141 -2.4772 31 1 2.7614 -6.0871 -0.9763 32 1 0.4679 -9.9597 -2.3366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335606704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:02 Heat of formation + Delta-G solvation = -114.766692 kcal Electronic energy + Delta-G solvation = -19831.632220 eV Core-core repulsion = 16234.460789 eV Total energy + Delta-G solvation = -3597.171431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.51273 -49.59038 -41.81000 -39.72228 -36.30015 -35.79406 -34.40021 -33.58458 -30.80144 -29.41779 -28.01100 -24.87903 -23.62747 -22.96122 -21.99108 -20.19886 -19.38755 -18.56885 -18.35268 -17.84492 -17.39833 -17.18708 -16.58071 -16.35195 -16.03729 -15.98892 -15.46993 -15.03293 -14.75667 -14.60006 -14.39620 -14.22976 -14.12162 -13.91026 -13.06009 -12.94324 -12.91365 -12.67469 -12.37458 -11.91248 -11.64226 -11.46987 -11.17325 -10.89804 -10.04049 -9.87162 -9.13965 -8.37559 -6.44714 -0.17946 -0.08393 1.36355 1.38543 1.50517 1.53269 1.92713 2.30725 2.40994 2.75860 2.98676 3.19548 3.33406 3.54522 3.76119 3.87968 4.21648 4.40498 4.69267 4.69661 4.76545 4.84103 5.04479 5.06724 5.09005 5.12899 5.26745 5.30296 5.46363 5.76630 5.87189 6.20497 6.57700 7.03021 7.20073 7.47765 8.76991 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038473 B = 0.003822 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.601646 B = 7324.529050 C = 7904.212098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.117 4.117 3 C 0.074 3.926 4 F -0.129 7.129 5 C 0.040 3.960 6 F -0.137 7.137 7 C -0.104 4.104 8 C -0.110 4.110 9 C 0.182 3.818 10 N -0.668 5.668 11 C 0.698 3.302 12 O -0.615 6.615 13 N -0.711 5.711 14 C 0.250 3.750 15 C -0.546 4.546 16 H 0.061 0.939 17 C 0.027 3.973 18 N -0.932 5.932 19 Si 0.936 3.064 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.257 1.257 23 H 0.100 0.900 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.169 0.831 27 H 0.146 0.854 28 H 0.426 0.574 29 H 0.409 0.591 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 19.411 6.060 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C 0.053 3.947 4 F -0.108 7.108 5 C 0.019 3.981 6 F -0.115 7.115 7 C -0.123 4.123 8 C -0.130 4.130 9 C 0.086 3.914 10 N -0.317 5.317 11 C 0.398 3.602 12 O -0.496 6.496 13 N -0.363 5.363 14 C 0.126 3.874 15 C -0.584 4.584 16 H 0.079 0.921 17 C -0.173 4.173 18 N -0.571 5.571 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.181 1.181 23 H 0.119 0.881 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.186 0.814 27 H 0.163 0.837 28 H 0.265 0.735 29 H 0.245 0.755 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.405 19.239 5.499 20.297 hybrid contribution -0.205 -0.176 -0.097 0.287 sum 3.200 19.063 5.403 20.070 Atomic orbital electron populations 1.20810 0.87167 1.04571 1.04680 1.19621 0.98741 0.88954 1.04762 1.17182 0.88077 0.81874 1.07526 1.91494 1.79962 1.45198 1.94121 1.17728 0.88362 0.82646 1.09353 1.91495 1.79876 1.45786 1.94390 1.21096 1.02275 0.88820 1.00091 1.21341 0.92986 0.99248 0.99459 1.17175 0.90950 0.84067 0.99254 1.42377 1.27191 1.07844 1.54301 1.16078 0.84051 0.80665 0.79398 1.90861 1.21984 1.83425 1.53307 1.45116 1.22306 1.11271 1.57646 1.19040 0.94159 0.82631 0.91604 1.21271 1.04661 0.96560 1.35893 0.92085 1.25564 1.00186 0.95233 0.96322 1.69976 1.37542 1.04382 1.45167 0.85876 0.79989 0.79021 0.79122 1.18967 1.20243 1.18125 0.88145 0.90173 0.89932 0.81370 0.83686 0.73455 0.75528 0.96685 0.96559 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 9.29 71.24 0.66 -1.05 16 2 C -0.12 -2.43 5.90 -19.71 -0.12 -2.55 16 3 C 0.07 1.69 7.24 22.39 0.16 1.85 16 4 F -0.13 -2.99 16.39 44.97 0.74 -2.25 16 5 C 0.04 0.93 7.30 22.41 0.16 1.09 16 6 F -0.14 -3.30 17.18 44.97 0.77 -2.53 16 7 C -0.10 -2.25 10.02 22.29 0.22 -2.03 16 8 C -0.11 -2.79 8.70 22.39 0.19 -2.59 16 9 C 0.18 4.39 6.29 38.11 0.24 4.63 16 10 N -0.67 -16.00 4.76 -317.14 -1.51 -17.51 16 11 C 0.70 23.58 8.41 179.05 1.51 25.09 16 12 O -0.62 -25.19 13.76 -3.98 -0.05 -25.24 16 13 N -0.71 -25.56 5.55 -482.29 -2.68 -28.24 16 14 C 0.25 11.38 4.50 85.63 0.38 11.77 16 15 C -0.55 -28.54 9.83 25.60 0.25 -28.29 16 16 H 0.06 3.35 7.84 -2.91 -0.02 3.32 16 17 C 0.03 1.49 5.47 84.65 0.46 1.95 16 18 N -0.93 -54.05 13.96 21.45 0.30 -53.75 16 19 Si 0.94 42.28 27.47 68.60 1.88 44.16 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.26 -11.41 6.54 99.48 0.65 -10.76 16 23 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.16 7.65 -2.39 -0.02 1.14 16 25 H 0.08 1.15 7.17 -2.39 -0.02 1.13 16 26 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 27 H 0.15 4.23 6.19 -2.91 -0.02 4.21 16 28 H 0.43 7.10 7.86 -92.71 -0.73 6.37 16 29 H 0.41 12.44 8.34 -92.71 -0.77 11.67 16 30 H 0.02 0.73 7.20 -2.39 -0.02 0.72 16 31 H 0.02 0.77 7.57 -2.38 -0.02 0.76 16 32 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -64.64 287.09 3.22 -61.42 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -0.36 Total: 14.07 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 4.13 Total: 9.87 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -3.89 Total: -99.50 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.05 Total: -25.24 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 1.51 Total: -4.78 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.88 Total: 44.16 kcal Total: -64.64 3.22 -61.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335606704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.346 kcal (2) G-P(sol) polarization free energy of solvation -64.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds