Wall clock time and date at job start Mon Mar 30 2020 01:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38700 * 120.00072 * 2 1 4 4 N 1.30239 * 126.16564 * 0.02767 * 3 2 1 5 5 N 1.26097 * 117.62030 * 179.97438 * 4 3 2 6 6 C 1.29316 * 117.96875 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.06338 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47355 * 90.02402 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 C 1.50696 * 109.47047 * 204.72109 * 11 10 8 15 15 H 1.08003 * 120.00092 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00258 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00028 * 179.97438 * 16 14 11 18 18 Si 1.86794 * 119.99858 * 0.02562 * 16 14 11 19 19 H 1.48501 * 109.47354 * 89.99590 * 18 16 14 20 20 H 1.48501 * 109.46908 * 209.99697 * 18 16 14 21 21 H 1.48506 * 109.47061 * 329.99324 * 18 16 14 22 22 S 1.76474 * 107.87181 * 0.26172 * 6 5 4 23 23 H 1.08997 * 109.47018 * 60.00199 * 1 2 3 24 24 H 1.09005 * 109.46816 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46970 * 299.99411 * 1 2 3 26 26 H 0.97001 * 119.99566 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47477 * 330.02247 * 7 6 5 28 28 H 1.09002 * 109.47412 * 210.02506 * 7 6 5 29 29 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 30 30 H 1.09003 * 109.47054 * 179.97438 * 13 11 10 31 31 H 1.08996 * 109.47245 * 299.99926 * 13 11 10 32 32 H 1.08995 * 109.47098 * 60.00065 * 13 11 10 33 33 H 0.97003 * 120.00277 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1586 1.2012 0.0000 4 7 1.6323 2.3925 0.0005 5 7 2.4181 3.3787 0.0009 6 6 3.6892 3.1413 0.0003 7 6 4.7849 4.1760 0.0012 8 6 5.1510 4.5189 1.4223 9 8 4.5782 3.9767 2.3436 10 7 6.1142 5.4287 1.6693 11 6 6.4742 5.7574 3.0508 12 1 5.5822 5.7248 3.6763 13 6 7.4964 4.7426 3.5668 14 6 7.0710 7.1403 3.0988 15 1 7.1717 7.7169 2.1911 16 6 7.4876 7.6701 4.3017 17 7 8.0089 8.8767 4.3435 18 14 7.3129 6.6733 5.8717 19 1 8.5412 5.8665 6.0852 20 1 7.1178 7.5919 7.0221 21 1 6.1406 5.7690 5.7561 22 16 3.9133 1.3909 -0.0087 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.9500 -0.8401 -0.0004 27 1 4.4378 5.0733 -0.5112 28 1 5.6599 3.7792 -0.5137 29 1 6.5721 5.8625 0.9324 30 1 7.7645 4.9876 4.5946 31 1 7.0647 3.7424 3.5321 32 1 8.3884 4.7753 2.9413 33 1 8.3024 9.2493 5.1897 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336758116.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:29 Heat of formation + Delta-G solvation = 35.099478 kcal Electronic energy + Delta-G solvation = -17881.100194 eV Core-core repulsion = 14876.560585 eV Total energy + Delta-G solvation = -3004.539609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.84632 -39.05211 -36.50834 -35.05719 -32.66000 -32.21382 -30.04995 -28.57910 -26.87796 -25.19473 -24.41235 -21.55786 -19.91551 -19.68881 -19.21426 -17.46252 -17.28618 -16.12478 -15.90367 -15.49762 -15.21565 -14.81051 -14.23481 -13.89502 -13.67443 -13.16462 -12.98789 -12.92424 -12.63264 -12.21502 -12.20159 -11.74797 -11.21950 -11.02362 -10.81411 -10.41823 -10.18713 -9.98443 -9.72559 -9.55325 -9.23059 -9.20762 -8.75526 -8.20829 -8.18086 -6.20368 -4.22889 0.60058 0.73339 1.32340 2.77074 2.86937 3.16516 3.24091 3.36470 3.41338 3.89783 4.31284 4.32680 4.76146 4.84336 5.03534 5.14624 5.17131 5.33456 5.44305 5.53093 5.67908 6.30730 6.36739 6.40026 6.55346 6.85122 6.85269 7.17920 7.27564 7.51520 8.12983 8.50556 8.75665 8.83026 8.89564 9.40441 10.91804 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.039970 B = 0.003901 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.348834 B = 7175.793959 C = 7344.061316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.691 5.691 3 C 0.292 3.708 4 N -0.337 5.337 5 N -0.219 5.219 6 C 0.042 3.958 7 C -0.060 4.060 8 C 0.508 3.492 9 O -0.545 6.545 10 N -0.698 5.698 11 C 0.237 3.763 12 H 0.049 0.951 13 C -0.161 4.161 14 C -0.535 4.535 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.885 3.115 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.262 1.262 22 S 0.035 5.965 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.417 0.583 27 H 0.127 0.873 28 H 0.114 0.886 29 H 0.397 0.603 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.290 -18.240 -11.725 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.331 5.331 3 C -0.081 4.081 4 N -0.184 5.184 5 N -0.052 5.052 6 C -0.244 4.244 7 C -0.104 4.104 8 C 0.290 3.710 9 O -0.424 6.424 10 N -0.347 5.347 11 C 0.134 3.866 12 H 0.067 0.933 13 C -0.219 4.219 14 C -0.573 4.573 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.529 5.529 18 Si 0.714 3.286 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.187 1.187 22 S 0.273 5.727 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.254 0.746 27 H 0.145 0.855 28 H 0.132 0.868 29 H 0.231 0.769 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.095 -18.260 -10.941 23.148 hybrid contribution 0.499 -0.612 0.647 1.021 sum -8.596 -18.871 -10.294 23.151 Atomic orbital electron populations 1.21669 0.77501 1.02513 1.02844 1.43520 1.06628 1.02449 1.80492 1.26767 0.91048 0.91974 0.98266 1.71315 1.28030 0.92965 1.26070 1.70641 0.99620 1.22962 1.12011 1.28426 0.95492 0.93005 1.07429 1.20184 0.95034 0.97361 0.97857 1.20095 0.80535 0.80568 0.89776 1.90695 1.52973 1.52749 1.45934 1.46124 1.37049 1.40634 1.10870 1.19112 0.94710 0.94109 0.78707 0.93329 1.22452 1.00470 0.98600 1.00419 1.21038 1.41922 0.97987 0.96331 0.90071 1.24825 0.94039 0.94836 0.98821 1.69865 1.40765 1.15495 1.26797 0.86885 0.79318 0.79565 0.82785 1.20306 1.22128 1.18677 1.85683 1.04119 1.08087 1.74807 0.91924 0.90144 0.91847 0.74642 0.85538 0.86780 0.76940 0.93445 0.94582 0.92748 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.04 59.85 0.66 1.35 16 2 N -0.69 -6.01 5.87 -67.42 -0.40 -6.41 16 3 C 0.29 3.80 8.51 -87.14 -0.74 3.06 16 4 N -0.34 -5.50 11.24 31.00 0.35 -5.16 16 5 N -0.22 -3.83 11.55 33.57 0.39 -3.45 16 6 C 0.04 0.65 6.28 -13.34 -0.08 0.56 16 7 C -0.06 -0.80 6.33 -29.03 -0.18 -0.98 16 8 C 0.51 9.42 7.78 -10.98 -0.09 9.34 16 9 O -0.55 -12.49 15.70 5.55 0.09 -12.40 16 10 N -0.70 -13.44 5.07 -54.94 -0.28 -13.72 16 11 C 0.24 5.63 2.15 -69.09 -0.15 5.48 16 12 H 0.05 1.29 6.64 -51.93 -0.34 0.95 16 13 C -0.16 -3.57 8.96 37.16 0.33 -3.24 16 14 C -0.53 -14.39 9.31 -34.44 -0.32 -14.71 16 15 H 0.08 2.28 7.98 -52.48 -0.42 1.86 16 16 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 17 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 18 Si 0.88 21.89 24.37 -169.99 -4.14 17.75 16 19 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 22 S 0.04 0.44 23.54 -107.50 -2.53 -2.09 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.42 2.37 8.95 -40.82 -0.37 2.00 16 27 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.40 6.44 8.54 -40.82 -0.35 6.09 16 30 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -35.50 298.30 -5.71 -41.21 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.79 Total: 2.47 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.67 Total: 2.97 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.84 Total: -54.40 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.14 Total: 17.75 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -2.53 Total: -2.09 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.50 -5.71 -41.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336758116.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.310 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds