Wall clock time and date at job start Mon Mar 30 2020 00:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46675 * 160.65229 * 3 2 1 5 5 C 1.36920 * 119.99800 * 267.01241 * 4 3 2 6 6 H 1.07999 * 119.99935 * 195.87244 * 5 4 3 7 7 C 1.39007 * 119.99882 * 15.59626 * 5 4 3 8 8 N 1.31386 * 120.00249 * 28.20305 * 7 5 4 9 9 Si 1.86802 * 119.99790 * 208.20185 * 7 5 4 10 10 H 1.48497 * 109.47007 * 60.00354 * 9 7 5 11 11 H 1.48503 * 109.46778 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47140 * 299.99927 * 9 7 5 13 13 C 1.34777 * 120.00385 * 87.01799 * 4 3 2 14 14 O 1.21617 * 120.00308 * 173.52483 * 13 4 3 15 15 C 1.47488 * 119.99524 * 353.53092 * 13 4 3 16 16 C 1.36675 * 125.92452 * 174.51000 * 15 13 4 17 17 N 1.36208 * 107.08200 * 179.87300 * 16 15 13 18 18 C 1.36679 * 132.28480 * 180.09818 * 17 16 15 19 19 C 1.34852 * 120.63609 * 180.35285 * 18 17 16 20 20 C 1.40565 * 120.34311 * 359.95642 * 19 18 17 21 21 C 1.35900 * 119.72764 * 0.02562 * 20 19 18 22 22 C 1.37271 * 107.34601 * 0.38127 * 17 16 15 23 23 N 1.32248 * 108.39658 * 359.75646 * 22 17 16 24 24 H 1.08996 * 109.47206 * 40.65026 * 3 2 1 25 25 H 1.09004 * 109.46987 * 280.64961 * 3 2 1 26 26 H 0.96993 * 120.00486 * 179.97438 * 8 7 5 27 27 H 1.07999 * 126.46147 * 0.02562 * 16 15 13 28 28 H 1.07999 * 119.67745 * 0.35343 * 18 17 16 29 29 H 1.08008 * 119.82703 * 179.97438 * 19 18 17 30 30 H 1.07995 * 120.13324 * 180.02562 * 20 19 18 31 31 H 1.08006 * 120.32309 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0956 1.3042 -0.4576 5 6 3.3819 1.5015 -1.7819 6 1 3.9729 2.3529 -2.0856 7 6 2.9168 0.6028 -2.7350 8 7 1.8115 -0.0731 -2.5165 9 14 3.8632 0.3562 -4.3265 10 1 5.2336 -0.1255 -4.0179 11 1 3.1632 -0.6472 -5.1682 12 1 3.9448 1.6455 -5.0588 13 6 3.2625 2.3090 0.4249 14 8 3.7771 3.3519 0.0689 15 6 2.8212 2.1438 1.8225 16 6 3.0245 3.0354 2.8383 17 7 2.4601 2.5022 3.9574 18 6 2.3636 2.9547 5.2435 19 6 1.7460 2.2158 6.1875 20 6 1.1904 0.9667 5.8606 21 6 1.2778 0.5030 4.5861 22 6 1.9275 1.2864 3.6077 23 7 2.1535 1.0865 2.3201 24 1 2.9717 -0.7788 -0.6694 25 1 2.9714 -0.1891 1.0100 26 1 1.4868 -0.6999 -3.1816 27 1 3.5341 3.9849 2.7665 28 1 2.7861 3.9133 5.5063 29 1 1.6776 2.5859 7.1999 30 1 0.6962 0.3779 6.6191 31 1 0.8539 -0.4553 4.3242 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337236737.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:50 Heat of formation + Delta-G solvation = 90.369343 kcal Electronic energy + Delta-G solvation = -19838.724380 eV Core-core repulsion = 16701.137502 eV Total energy + Delta-G solvation = -3137.586879 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.76600 -40.47535 -38.04179 -37.51661 -36.05329 -34.68400 -33.76204 -31.31412 -29.74975 -29.14344 -27.29341 -24.97435 -23.61688 -23.44528 -20.84578 -19.76898 -18.98359 -18.06221 -17.87299 -17.52220 -16.88832 -16.72908 -15.99817 -15.90776 -15.40147 -15.18571 -15.04684 -14.67327 -14.52950 -13.86574 -13.35548 -13.19151 -13.09820 -12.86967 -12.73826 -12.59209 -12.29814 -12.12683 -12.10816 -11.93540 -11.21431 -11.05821 -10.64874 -10.01057 -9.80429 -8.85195 -8.48162 -5.96269 -0.21653 0.29977 1.12335 1.46934 1.52822 1.57275 1.62368 2.03506 2.34380 2.42244 2.47224 2.66781 2.98120 3.03170 3.26803 3.65829 3.79319 3.85743 4.03790 4.25323 4.25849 4.43965 4.68228 4.72720 4.77764 4.89314 5.18004 5.30782 5.44153 5.44689 5.62546 5.93022 6.12089 6.34825 6.74023 7.03118 7.18338 7.28028 7.86083 8.55717 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033644 B = 0.005605 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.045743 B = 4994.436813 C = 5638.617712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.286 3.714 3 C 0.233 3.767 4 N -0.429 5.429 5 C -0.357 4.357 6 H 0.092 0.908 7 C 0.009 3.991 8 N -0.876 5.876 9 Si 0.994 3.006 10 H -0.258 1.258 11 H -0.276 1.276 12 H -0.275 1.275 13 C 0.511 3.489 14 O -0.613 6.613 15 C -0.003 4.003 16 C -0.033 4.033 17 N -0.365 5.365 18 C 0.040 3.960 19 C -0.131 4.131 20 C -0.076 4.076 21 C -0.111 4.111 22 C 0.209 3.791 23 N -0.506 5.506 24 H 0.109 0.891 25 H 0.128 0.872 26 H 0.279 0.721 27 H 0.208 0.792 28 H 0.197 0.803 29 H 0.198 0.802 30 H 0.182 0.818 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -0.292 19.493 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 C -0.031 4.031 3 C 0.107 3.893 4 N -0.146 5.146 5 C -0.484 4.484 6 H 0.110 0.890 7 C -0.196 4.196 8 N -0.512 5.512 9 Si 0.817 3.183 10 H -0.182 1.182 11 H -0.201 1.201 12 H -0.200 1.200 13 C 0.301 3.699 14 O -0.499 6.499 15 C -0.134 4.134 16 C -0.168 4.168 17 N -0.037 5.037 18 C -0.080 4.080 19 C -0.150 4.150 20 C -0.100 4.100 21 C -0.131 4.131 22 C -0.036 4.036 23 N -0.229 5.229 24 H 0.127 0.873 25 H 0.146 0.854 26 H 0.089 0.911 27 H 0.224 0.776 28 H 0.214 0.786 29 H 0.215 0.785 30 H 0.199 0.801 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.621 -0.574 18.686 18.705 hybrid contribution 0.756 0.645 -1.009 1.416 sum 1.376 0.071 17.677 17.731 Atomic orbital electron populations 1.80745 1.14585 1.09690 1.15027 1.29081 0.95232 0.91315 0.87471 1.18982 0.81310 0.87075 1.01947 1.43651 1.54515 1.09049 1.07346 1.19707 1.33641 1.13483 0.81519 0.89023 1.26126 0.94790 0.95904 1.02731 1.70054 1.16860 1.26027 1.38294 0.84997 0.78887 0.78142 0.76322 1.18241 1.20097 1.20048 1.17269 0.84861 0.83549 0.84262 1.90567 1.50353 1.29017 1.79988 1.20710 1.03868 0.94102 0.94758 1.22623 1.07520 1.02831 0.83876 1.42886 1.36092 1.15869 1.08814 1.22513 1.02733 1.02721 0.80046 1.21438 0.98020 0.94494 1.01092 1.21577 0.96990 0.96147 0.95269 1.20592 1.00583 1.00590 0.91324 1.21647 1.02156 0.87415 0.92408 1.70951 1.19850 1.25633 1.06488 0.87293 0.85436 0.91090 0.77566 0.78607 0.78537 0.80114 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -28.09 18.54 20.01 0.37 -27.72 16 2 C 0.29 14.70 11.89 89.44 1.06 15.77 16 3 C 0.23 11.06 4.76 84.57 0.40 11.46 16 4 N -0.43 -22.95 2.59 -649.08 -1.68 -24.63 16 5 C -0.36 -20.00 9.32 84.08 0.78 -19.22 16 6 H 0.09 5.40 7.38 -2.91 -0.02 5.38 16 7 C 0.01 0.47 4.70 84.94 0.40 0.87 16 8 N -0.88 -47.05 9.71 21.67 0.21 -46.84 16 9 Si 0.99 41.12 29.64 68.60 2.03 43.15 16 10 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 11 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 12 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 13 C 0.51 26.97 7.58 86.68 0.66 27.62 16 14 O -0.61 -35.21 16.51 -4.08 -0.07 -35.28 16 15 C 0.00 -0.12 6.54 40.79 0.27 0.15 16 16 C -0.03 -1.16 11.47 83.65 0.96 -0.20 16 17 N -0.37 -10.36 2.93 -351.16 -1.03 -11.38 16 18 C 0.04 0.66 10.93 83.16 0.91 1.57 16 19 C -0.13 -1.42 9.98 22.06 0.22 -1.20 16 20 C -0.08 -1.04 10.06 22.29 0.22 -0.81 16 21 C -0.11 -2.58 10.11 22.45 0.23 -2.36 16 22 C 0.21 6.85 7.79 134.20 1.05 7.90 16 23 N -0.51 -20.88 6.87 -183.51 -1.26 -22.14 16 24 H 0.11 5.06 6.70 -2.39 -0.02 5.04 16 25 H 0.13 5.46 5.78 -2.38 -0.01 5.44 16 26 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.21 6.21 8.06 -2.91 -0.02 6.19 16 28 H 0.20 1.74 8.06 -2.91 -0.02 1.71 16 29 H 0.20 0.30 8.06 -2.91 -0.02 0.28 16 30 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 31 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -78.96 281.68 6.92 -72.04 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.18 Total: 11.24 kcal Atomic # 6 Polarization: 34.40 SS G_CDS: 7.16 Total: 41.56 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -3.39 Total: -132.72 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.07 Total: -35.28 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -78.96 6.92 -72.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337236737.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.412 kcal (2) G-P(sol) polarization free energy of solvation -78.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds