Wall clock time and date at job start Mon Mar 30 2020 00:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46510 * 109.46577 * 164.34571 * 3 2 1 5 5 C 1.36922 * 119.99652 * 277.91375 * 4 3 2 6 6 H 1.08001 * 119.99470 * 251.82878 * 5 4 3 7 7 C 1.38989 * 120.00117 * 71.83425 * 5 4 3 8 8 N 1.31403 * 119.99815 * 63.69280 * 7 5 4 9 9 Si 1.86795 * 119.99719 * 243.69588 * 7 5 4 10 10 H 1.48497 * 109.47231 * 90.00190 * 9 7 5 11 11 H 1.48511 * 109.46749 * 209.99904 * 9 7 5 12 12 H 1.48495 * 109.47533 * 329.99846 * 9 7 5 13 13 C 1.34778 * 119.99956 * 97.91434 * 4 3 2 14 14 O 1.21639 * 119.99781 * 185.12192 * 13 4 3 15 15 C 1.47400 * 119.99928 * 5.12080 * 13 4 3 16 16 C 1.46515 * 120.17806 * 331.59882 * 15 13 4 17 17 C 1.35532 * 119.04461 * 179.97438 * 16 15 13 18 18 C 1.41238 * 119.43978 * 359.97438 * 17 16 15 19 19 C 1.37921 * 132.95379 * 180.02562 * 18 17 16 20 20 N 1.33458 * 107.65720 * 179.78041 * 19 18 17 21 21 C 1.30744 * 109.93411 * 0.37380 * 20 19 18 22 22 N 1.35944 * 109.20820 * 359.62213 * 21 20 19 23 23 C 1.36366 * 132.47078 * 180.22479 * 22 21 20 24 24 H 1.09001 * 109.47431 * 44.34675 * 3 2 1 25 25 H 1.08998 * 109.47042 * 284.34020 * 3 2 1 26 26 H 0.97001 * 119.99511 * 179.97438 * 8 7 5 27 27 H 1.07999 * 120.47582 * 0.02562 * 16 15 13 28 28 H 1.07995 * 120.27933 * 180.02562 * 17 16 15 29 29 H 1.07994 * 126.17184 * 0.02562 * 19 18 17 30 30 H 1.08004 * 125.39683 * 179.88915 * 21 20 19 31 31 H 1.07997 * 119.75151 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0956 1.3310 -0.3727 5 6 3.1697 1.6880 -1.6925 6 1 4.1319 1.7755 -2.1750 7 6 2.0065 1.9377 -2.4112 8 7 1.2267 2.9393 -2.0717 9 14 1.5519 0.8493 -3.8596 10 1 0.7191 -0.2847 -3.3845 11 1 0.7862 1.6431 -4.8541 12 1 2.7887 0.3242 -4.4918 13 6 3.4714 2.2033 0.5835 14 8 3.7874 3.3383 0.2810 15 6 3.4992 1.7820 1.9957 16 6 2.5942 0.7314 2.4688 17 6 2.6396 0.3614 3.7719 18 6 3.5552 0.9940 4.6416 19 6 3.8342 0.8430 5.9838 20 7 4.8063 1.7031 6.2944 21 6 5.1494 2.3893 5.2357 22 7 4.4002 1.9824 4.1768 23 6 4.3682 2.3680 2.8692 24 1 2.9717 -0.7341 -0.7183 25 1 2.9714 -0.2537 0.9956 26 1 0.4152 3.1138 -2.5735 27 1 1.9015 0.2580 1.7888 28 1 1.9818 -0.4111 4.1419 29 1 3.3555 0.1507 6.6604 30 1 5.9108 3.1548 5.2060 31 1 5.0363 3.1424 2.5223 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339818411.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:10 Heat of formation + Delta-G solvation = 115.444337 kcal Electronic energy + Delta-G solvation = -19823.199719 eV Core-core repulsion = 16686.700174 eV Total energy + Delta-G solvation = -3136.499545 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.68516 -40.87122 -37.98031 -37.76502 -36.22995 -34.72361 -34.08226 -31.91064 -29.67612 -28.73334 -27.27704 -24.91298 -23.80796 -22.80358 -21.32981 -19.65751 -19.24291 -18.42014 -18.24023 -17.15103 -16.87953 -16.69694 -16.56631 -15.81683 -15.52552 -15.31164 -15.21404 -14.78016 -14.35338 -14.09334 -13.92035 -13.72774 -13.50347 -13.18833 -12.85690 -12.70832 -12.50872 -12.26323 -12.07474 -11.55256 -11.31269 -10.83074 -10.40595 -10.21265 -9.53716 -8.66935 -8.49363 -6.16933 -0.29196 0.01839 1.23980 1.42477 1.49448 1.54089 1.59561 1.71792 1.88439 2.16680 2.26481 2.44622 2.55432 3.01630 3.23973 3.49821 3.68671 3.72763 3.82228 3.93388 3.96506 4.33490 4.53769 4.56438 4.70274 4.81400 4.93926 5.12954 5.34074 5.47728 5.60685 6.11554 6.39763 6.53456 6.64294 6.83582 7.13387 7.22675 8.03942 8.22551 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034079 B = 0.005608 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.426740 B = 4991.594607 C = 5515.988286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.212 3.788 3 C 0.161 3.839 4 N -0.438 5.438 5 C -0.457 4.457 6 H 0.073 0.927 7 C 0.100 3.900 8 N -0.781 5.781 9 Si 0.895 3.105 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.240 1.240 13 C 0.522 3.478 14 O -0.583 6.583 15 C -0.149 4.149 16 C -0.143 4.143 17 C -0.057 4.057 18 C -0.018 4.018 19 C -0.018 4.018 20 N -0.482 5.482 21 C 0.152 3.848 22 N -0.380 5.380 23 C 0.113 3.887 24 H 0.145 0.855 25 H 0.162 0.838 26 H 0.273 0.727 27 H 0.153 0.847 28 H 0.186 0.814 29 H 0.208 0.792 30 H 0.243 0.757 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.005 -8.418 10.923 14.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.106 4.106 3 C 0.036 3.964 4 N -0.159 5.159 5 C -0.579 4.579 6 H 0.091 0.909 7 C -0.123 4.123 8 N -0.405 5.405 9 Si 0.716 3.284 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.163 1.163 13 C 0.312 3.688 14 O -0.465 6.465 15 C -0.155 4.155 16 C -0.163 4.163 17 C -0.076 4.076 18 C -0.126 4.126 19 C -0.171 4.171 20 N -0.195 5.195 21 C -0.123 4.123 22 N -0.052 5.052 23 C -0.010 4.010 24 H 0.162 0.838 25 H 0.178 0.822 26 H 0.084 0.916 27 H 0.170 0.830 28 H 0.203 0.797 29 H 0.225 0.775 30 H 0.259 0.741 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.788 -7.481 11.545 14.269 hybrid contribution -0.525 0.189 -1.926 2.005 sum 3.263 -7.292 9.619 12.504 Atomic orbital electron populations 1.81063 1.14572 1.09321 1.10331 1.30497 0.96578 0.91911 0.91577 1.20664 0.78950 0.89483 1.07343 1.43027 1.58121 1.10103 1.04687 1.18274 0.92612 1.62741 0.84245 0.90931 1.26206 0.95707 0.91579 0.98781 1.70879 1.11857 1.18320 1.39435 0.86539 0.79717 0.81639 0.80516 1.19398 1.21619 1.16286 1.19121 0.79785 0.85192 0.84738 1.90655 1.52116 1.20473 1.83240 1.20786 1.00059 1.00405 0.94299 1.22805 0.99705 0.96808 0.97022 1.20813 0.96527 0.99747 0.90550 1.20134 0.98977 0.96892 0.96610 1.23070 0.99250 1.02931 0.91809 1.69999 1.13870 1.08122 1.27535 1.25884 1.01770 1.04954 0.79706 1.43087 1.27324 1.26900 1.07871 1.21660 0.99833 0.98783 0.80697 0.83793 0.82193 0.91632 0.82959 0.79665 0.77496 0.74071 0.80169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.62 18.54 20.01 0.37 -19.25 16 2 C 0.21 7.91 12.88 89.44 1.15 9.06 16 3 C 0.16 5.17 5.39 84.57 0.46 5.63 16 4 N -0.44 -19.25 2.52 -649.16 -1.64 -20.89 16 5 C -0.46 -23.14 8.19 84.08 0.69 -22.45 16 6 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 7 C 0.10 5.05 4.64 84.94 0.39 5.44 16 8 N -0.78 -43.06 13.96 21.67 0.30 -42.76 16 9 Si 0.90 37.81 29.69 68.60 2.04 39.85 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.24 -9.47 7.11 99.48 0.71 -8.76 16 13 C 0.52 23.52 7.42 86.66 0.64 24.16 16 14 O -0.58 -31.81 16.59 -4.16 -0.07 -31.88 16 15 C -0.15 -5.09 5.66 -19.13 -0.11 -5.20 16 16 C -0.14 -3.98 7.66 23.80 0.18 -3.80 16 17 C -0.06 -1.27 10.09 22.38 0.23 -1.04 16 18 C -0.02 -0.45 6.78 38.82 0.26 -0.19 16 19 C -0.02 -0.41 12.00 84.37 1.01 0.61 16 20 N -0.48 -12.20 11.19 -197.48 -2.21 -14.41 16 21 C 0.15 3.49 12.76 179.90 2.30 5.78 16 22 N -0.38 -9.97 2.94 -349.75 -1.03 -11.00 16 23 C 0.11 3.34 10.49 83.57 0.88 4.22 16 24 H 0.14 3.78 8.10 -2.39 -0.02 3.77 16 25 H 0.16 3.98 4.05 -2.45 -0.01 3.97 16 26 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.15 4.27 3.09 -2.91 -0.01 4.26 16 28 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.21 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.24 3.60 8.06 -2.91 -0.02 3.58 16 31 H 0.18 5.05 7.83 -2.91 -0.02 5.02 16 Total: -1.00 -72.62 284.33 7.04 -65.57 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.20 Total: 12.54 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 8.08 Total: 22.22 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -4.20 Total: -108.31 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.07 Total: -31.88 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.04 Total: 39.85 kcal Total: -72.62 7.04 -65.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339818411.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.018 kcal (2) G-P(sol) polarization free energy of solvation -72.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds