Wall clock time and date at job start Mon Mar 30 2020 00:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46908 * 94.22706 * 3 2 1 5 5 C 1.36779 * 119.99513 * 262.51297 * 4 3 2 6 6 H 1.08004 * 119.99401 * 207.42299 * 5 4 3 7 7 C 1.39097 * 120.00141 * 27.41707 * 5 4 3 8 8 N 1.31332 * 119.99925 * 26.43191 * 7 5 4 9 9 Si 1.86800 * 120.00084 * 206.42801 * 7 5 4 10 10 H 1.48507 * 109.47075 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47447 * 120.00392 * 9 7 5 12 12 H 1.48500 * 109.47374 * 240.00552 * 9 7 5 13 13 C 1.34768 * 120.00164 * 82.50936 * 4 3 2 14 14 O 1.21607 * 119.99907 * 181.55746 * 13 4 3 15 15 C 1.47782 * 120.00382 * 1.56315 * 13 4 3 16 16 C 1.39887 * 119.32886 * 172.35142 * 15 13 4 17 17 C 1.36966 * 119.44960 * 179.97438 * 16 15 13 18 18 C 1.39817 * 118.25183 * 359.95219 * 17 16 15 19 19 C 1.46137 * 134.22999 * 180.02562 * 18 17 16 20 20 C 1.34452 * 106.92349 * 180.02562 * 19 18 17 21 21 N 1.36738 * 109.99303 * 359.97438 * 20 19 18 22 22 H 0.97007 * 124.99924 * 179.97438 * 21 20 19 23 23 C 1.37556 * 110.00118 * 359.97438 * 21 20 19 24 24 N 1.32178 * 133.19072 * 179.97438 * 23 21 20 25 25 H 1.08992 * 109.47428 * 334.22437 * 3 2 1 26 26 H 1.09002 * 109.47097 * 214.21846 * 3 2 1 27 27 H 0.96998 * 119.99402 * 179.97438 * 8 7 5 28 28 H 1.07998 * 120.27882 * 359.96927 * 16 15 13 29 29 H 1.07998 * 120.87401 * 180.23567 * 17 16 15 30 30 H 1.07997 * 126.54052 * 359.97438 * 19 18 17 31 31 H 1.07997 * 125.00506 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.1027 -1.3775 5 6 3.4702 -1.0247 -2.0557 6 1 4.2090 -0.9623 -2.8411 7 6 2.8992 -2.2515 -1.7339 8 7 1.6995 -2.2980 -1.2015 9 14 3.8386 -3.8331 -2.0589 10 1 5.1581 -3.5106 -2.6593 11 1 4.0415 -4.5601 -0.7801 12 1 3.0634 -4.6858 -2.9955 13 6 3.1769 1.3073 -1.9764 14 8 3.5553 1.3891 -3.1292 15 6 2.8056 2.5289 -1.2323 16 6 3.0455 3.7812 -1.8076 17 6 2.7019 4.9150 -1.1203 18 6 2.1179 4.7723 0.1420 19 6 1.6285 5.7097 1.1507 20 6 1.1675 4.9743 2.1775 21 7 1.3224 3.6432 1.9059 22 1 1.0630 2.9205 2.4988 23 6 1.9001 3.4796 0.6683 24 7 2.2493 2.4154 -0.0336 25 1 2.9718 -0.9245 0.4468 26 1 2.9710 0.8506 0.5779 27 1 1.3012 -3.1535 -0.9775 28 1 3.4980 3.8535 -2.7855 29 1 2.8733 5.8934 -1.5442 30 1 1.6364 6.7876 1.0843 31 1 0.7373 5.3758 3.0831 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354387920.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:56 Heat of formation + Delta-G solvation = 96.837449 kcal Electronic energy + Delta-G solvation = -19996.728287 eV Core-core repulsion = 16859.421887 eV Total energy + Delta-G solvation = -3137.306401 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.30549 -39.03383 -36.95286 -35.64691 -34.17812 -32.89404 -31.80267 -29.83311 -29.13501 -27.28640 -25.38736 -23.59809 -22.44379 -20.68451 -19.73722 -18.21604 -17.77053 -16.87550 -16.28783 -16.02784 -14.99410 -14.82957 -14.58563 -14.13409 -13.89861 -13.46236 -13.27846 -13.18590 -12.73031 -12.39325 -12.11723 -11.79349 -11.73141 -11.46838 -11.19487 -11.15063 -10.54208 -10.48635 -10.39670 -10.09279 -9.30603 -9.10592 -8.45150 -8.22057 -7.95661 -7.91669 -6.58514 -4.04322 1.00690 1.63438 2.72302 2.91626 3.08120 3.19913 3.26669 3.59670 3.85254 4.10222 4.25266 4.48099 4.58985 4.77046 4.84394 4.91565 5.05661 5.43565 5.43895 5.52636 5.58266 5.86174 5.92861 6.04384 6.41458 6.51628 6.52240 6.62186 6.68025 7.17007 7.38364 7.39816 7.92643 8.16497 8.31076 8.94955 9.00303 9.12758 9.75330 10.45033 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029132 B = 0.006188 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.922332 B = 4524.009475 C = 5214.555702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C 0.267 3.733 3 C 0.216 3.784 4 N -0.405 5.405 5 C -0.318 4.318 6 H 0.110 0.890 7 C 0.040 3.960 8 N -0.843 5.843 9 Si 0.923 3.077 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.488 3.512 14 O -0.570 6.570 15 C 0.148 3.852 16 C -0.149 4.149 17 C -0.040 4.040 18 C -0.155 4.155 19 C -0.200 4.200 20 C 0.058 3.942 21 N -0.581 5.581 22 H 0.419 0.581 23 C 0.282 3.718 24 N -0.477 5.477 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.275 0.725 28 H 0.146 0.854 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 11.426 9.003 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.051 4.051 3 C 0.089 3.911 4 N -0.122 5.122 5 C -0.446 4.446 6 H 0.128 0.872 7 C -0.169 4.169 8 N -0.478 5.478 9 Si 0.749 3.251 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.277 3.723 14 O -0.453 6.453 15 C 0.001 3.999 16 C -0.171 4.171 17 C -0.066 4.066 18 C -0.162 4.162 19 C -0.226 4.226 20 C -0.069 4.069 21 N -0.188 5.188 22 H 0.256 0.744 23 C 0.048 3.952 24 N -0.194 5.194 25 H 0.117 0.883 26 H 0.137 0.863 27 H 0.086 0.914 28 H 0.164 0.836 29 H 0.151 0.849 30 H 0.164 0.836 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.581 10.398 8.970 13.745 hybrid contribution 0.483 -0.462 -0.077 0.673 sum 1.064 9.937 8.893 13.378 Atomic orbital electron populations 1.80817 1.13643 1.13115 1.08850 1.28853 0.94961 0.89189 0.92102 1.19138 0.82361 1.03637 0.86005 1.43488 1.52813 1.05666 1.10241 1.19761 1.21721 0.83160 1.19951 0.87204 1.25486 0.94362 1.00197 0.96833 1.69964 1.11145 1.27608 1.39125 0.85925 0.80228 0.80671 0.78303 1.18685 1.20287 1.20648 1.17596 0.86215 0.82468 0.86055 1.90649 1.52719 1.85442 1.16496 1.21429 0.94710 0.95147 0.88606 1.21516 1.02328 0.91372 1.01930 1.20587 0.95238 0.98847 0.91971 1.19963 1.05641 0.93960 0.96623 1.21575 1.08469 0.98515 0.94072 1.21812 1.02932 0.81642 1.00524 1.41533 1.54241 1.07747 1.15241 0.74407 1.18553 0.98243 0.90552 0.87876 1.67140 1.14630 1.30300 1.07376 0.88347 0.86267 0.91430 0.83614 0.84855 0.83555 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.23 18.54 42.15 0.78 -11.45 16 2 C 0.27 6.34 11.75 -20.76 -0.24 6.10 16 3 C 0.22 4.67 4.77 -6.82 -0.03 4.64 16 4 N -0.41 -10.04 2.57 -119.04 -0.31 -10.35 16 5 C -0.32 -8.32 9.05 -15.03 -0.14 -8.46 16 6 H 0.11 2.96 7.61 -52.48 -0.40 2.56 16 7 C 0.04 0.99 4.66 -17.45 -0.08 0.91 16 8 N -0.84 -22.04 10.34 55.50 0.57 -21.47 16 9 Si 0.92 19.27 29.63 -169.99 -5.04 14.24 16 10 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 11 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.49 12.02 7.51 -12.36 -0.09 11.93 16 14 O -0.57 -15.47 16.06 5.27 0.08 -15.38 16 15 C 0.15 3.08 6.59 -83.00 -0.55 2.53 16 16 C -0.15 -2.65 9.55 -39.43 -0.38 -3.02 16 17 C -0.04 -0.59 10.16 -39.45 -0.40 -0.99 16 18 C -0.15 -2.34 6.39 -104.99 -0.67 -3.01 16 19 C -0.20 -2.31 11.08 -37.75 -0.42 -2.73 16 20 C 0.06 0.58 11.82 -16.70 -0.20 0.38 16 21 N -0.58 -7.40 6.05 -12.09 -0.07 -7.48 16 22 H 0.42 4.54 8.96 -40.82 -0.37 4.18 16 23 C 0.28 4.69 8.43 -155.79 -1.31 3.38 16 24 N -0.48 -9.21 4.84 -8.83 -0.04 -9.26 16 25 H 0.10 2.07 7.16 -51.93 -0.37 1.70 16 26 H 0.12 2.29 5.42 -51.93 -0.28 2.01 16 27 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.15 2.49 7.63 -52.49 -0.40 2.09 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 280.37 15.07 4.23 4.23 Total: -1.00 -33.03 280.37 -6.53 -39.55 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -2.22 Total: 5.72 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: -4.51 Total: 11.65 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.93 Total: -60.00 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.08 Total: -15.38 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.04 Total: 14.24 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.03 -6.53 -39.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354387920.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.390 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds