Wall clock time and date at job start Mon Mar 30 2020 00:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46908 * 94.22706 * 3 2 1 5 5 C 1.36779 * 119.99513 * 262.51297 * 4 3 2 6 6 H 1.08004 * 119.99401 * 207.42299 * 5 4 3 7 7 C 1.39097 * 120.00141 * 27.41707 * 5 4 3 8 8 N 1.31332 * 119.99925 * 26.43191 * 7 5 4 9 9 Si 1.86800 * 120.00084 * 206.42801 * 7 5 4 10 10 H 1.48507 * 109.47075 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47447 * 120.00392 * 9 7 5 12 12 H 1.48500 * 109.47374 * 240.00552 * 9 7 5 13 13 C 1.34768 * 120.00164 * 82.50936 * 4 3 2 14 14 O 1.21607 * 119.99907 * 181.55746 * 13 4 3 15 15 C 1.47782 * 120.00382 * 1.56315 * 13 4 3 16 16 C 1.39887 * 119.32886 * 172.35142 * 15 13 4 17 17 C 1.36966 * 119.44960 * 179.97438 * 16 15 13 18 18 C 1.39817 * 118.25183 * 359.95219 * 17 16 15 19 19 C 1.46137 * 134.22999 * 180.02562 * 18 17 16 20 20 C 1.34452 * 106.92349 * 180.02562 * 19 18 17 21 21 N 1.36738 * 109.99303 * 359.97438 * 20 19 18 22 22 H 0.97007 * 124.99924 * 179.97438 * 21 20 19 23 23 C 1.37556 * 110.00118 * 359.97438 * 21 20 19 24 24 N 1.32178 * 133.19072 * 179.97438 * 23 21 20 25 25 H 1.08992 * 109.47428 * 334.22437 * 3 2 1 26 26 H 1.09002 * 109.47097 * 214.21846 * 3 2 1 27 27 H 0.96998 * 119.99402 * 179.97438 * 8 7 5 28 28 H 1.07998 * 120.27882 * 359.96927 * 16 15 13 29 29 H 1.07998 * 120.87401 * 180.23567 * 17 16 15 30 30 H 1.07997 * 126.54052 * 359.97438 * 19 18 17 31 31 H 1.07997 * 125.00506 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.1027 -1.3775 5 6 3.4702 -1.0247 -2.0557 6 1 4.2090 -0.9623 -2.8411 7 6 2.8992 -2.2515 -1.7339 8 7 1.6995 -2.2980 -1.2015 9 14 3.8386 -3.8331 -2.0589 10 1 5.1581 -3.5106 -2.6593 11 1 4.0415 -4.5601 -0.7801 12 1 3.0634 -4.6858 -2.9955 13 6 3.1769 1.3073 -1.9764 14 8 3.5553 1.3891 -3.1292 15 6 2.8056 2.5289 -1.2323 16 6 3.0455 3.7812 -1.8076 17 6 2.7019 4.9150 -1.1203 18 6 2.1179 4.7723 0.1420 19 6 1.6285 5.7097 1.1507 20 6 1.1675 4.9743 2.1775 21 7 1.3224 3.6432 1.9059 22 1 1.0630 2.9205 2.4988 23 6 1.9001 3.4796 0.6683 24 7 2.2493 2.4154 -0.0336 25 1 2.9718 -0.9245 0.4468 26 1 2.9710 0.8506 0.5779 27 1 1.3012 -3.1535 -0.9775 28 1 3.4980 3.8535 -2.7855 29 1 2.8733 5.8934 -1.5442 30 1 1.6364 6.7876 1.0843 31 1 0.7373 5.3758 3.0831 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354387920.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:56 Heat of formation + Delta-G solvation = 75.789853 kcal Electronic energy + Delta-G solvation = -19997.640979 eV Core-core repulsion = 16859.421887 eV Total energy + Delta-G solvation = -3138.219093 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.48414 -40.70575 -38.34215 -37.56422 -36.11401 -34.30414 -33.54027 -31.03470 -30.34601 -29.10411 -27.12798 -24.97640 -23.80297 -21.77241 -21.23376 -19.75403 -19.31598 -18.54737 -17.98652 -17.28020 -16.81030 -16.17497 -16.06095 -15.62432 -15.39607 -15.13200 -14.91462 -14.26753 -14.04310 -13.92091 -13.81671 -13.40481 -13.20039 -13.03108 -12.91117 -12.87055 -12.42949 -12.15911 -12.04297 -11.38526 -11.18253 -10.91285 -10.07260 -9.89306 -9.45231 -8.93460 -8.48673 -6.05715 -0.29158 0.37008 1.38413 1.47213 1.62394 1.70948 1.83445 1.95020 2.14409 2.32351 2.40522 2.84939 2.99198 3.10225 3.52519 3.73802 3.80501 3.92275 4.07160 4.24386 4.46174 4.67125 4.73865 4.81603 4.90071 5.01054 5.26723 5.41958 5.54124 5.59769 5.95941 6.06360 6.27168 6.43550 6.92003 7.04121 7.10916 7.23873 7.85639 8.54495 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029132 B = 0.006188 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.922332 B = 4524.009475 C = 5214.555702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.280 3.720 3 C 0.224 3.776 4 N -0.422 5.422 5 C -0.353 4.353 6 H 0.089 0.911 7 C 0.009 3.991 8 N -0.875 5.875 9 Si 0.993 3.007 10 H -0.262 1.262 11 H -0.261 1.261 12 H -0.285 1.285 13 C 0.483 3.517 14 O -0.609 6.609 15 C 0.108 3.892 16 C -0.158 4.158 17 C -0.030 4.030 18 C -0.151 4.151 19 C -0.211 4.211 20 C 0.087 3.913 21 N -0.578 5.578 22 H 0.427 0.573 23 C 0.248 3.752 24 N -0.488 5.488 25 H 0.102 0.898 26 H 0.145 0.855 27 H 0.277 0.723 28 H 0.142 0.858 29 H 0.175 0.825 30 H 0.181 0.819 31 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 13.719 11.431 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.038 4.038 3 C 0.098 3.902 4 N -0.138 5.138 5 C -0.480 4.480 6 H 0.106 0.894 7 C -0.196 4.196 8 N -0.511 5.511 9 Si 0.815 3.185 10 H -0.186 1.186 11 H -0.185 1.185 12 H -0.211 1.211 13 C 0.273 3.727 14 O -0.495 6.495 15 C -0.037 4.037 16 C -0.181 4.181 17 C -0.056 4.056 18 C -0.159 4.159 19 C -0.236 4.236 20 C -0.039 4.039 21 N -0.186 5.186 22 H 0.266 0.734 23 C 0.013 3.987 24 N -0.206 5.206 25 H 0.120 0.880 26 H 0.162 0.838 27 H 0.087 0.913 28 H 0.160 0.840 29 H 0.192 0.808 30 H 0.199 0.801 31 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.233 12.687 11.427 17.076 hybrid contribution 0.492 -0.876 -0.687 1.217 sum 0.725 11.811 10.740 15.980 Atomic orbital electron populations 1.80789 1.14516 1.14417 1.09879 1.29218 0.95323 0.88100 0.91114 1.19293 0.81136 1.04828 0.84983 1.43636 1.53451 1.05495 1.11257 1.19738 1.22569 0.84588 1.21107 0.89355 1.26254 0.94663 1.02594 0.96076 1.70037 1.12264 1.28319 1.40437 0.84906 0.78575 0.76408 0.78563 1.18590 1.18522 1.21089 1.18303 0.84623 0.83759 0.85996 1.90583 1.54038 1.86521 1.18355 1.20845 0.98433 0.94259 0.90123 1.21540 1.03000 0.91404 1.02134 1.20957 0.93617 0.99402 0.91625 1.20517 1.03936 0.94479 0.96999 1.22020 1.08652 0.99928 0.92990 1.22795 0.99712 0.79920 1.01496 1.41777 1.53408 1.09405 1.13974 0.73438 1.18899 0.99640 0.90672 0.89493 1.66780 1.14480 1.32196 1.07105 0.88010 0.83820 0.91309 0.84040 0.80770 0.80130 0.75608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -26.45 18.54 20.01 0.37 -26.08 16 2 C 0.28 13.56 11.75 89.44 1.05 14.61 16 3 C 0.22 9.99 4.77 84.57 0.40 10.39 16 4 N -0.42 -21.89 2.57 -648.79 -1.67 -23.56 16 5 C -0.35 -19.36 9.05 84.13 0.76 -18.60 16 6 H 0.09 5.10 7.61 -2.91 -0.02 5.07 16 7 C 0.01 0.48 4.66 84.97 0.40 0.88 16 8 N -0.88 -46.81 10.34 21.69 0.22 -46.59 16 9 Si 0.99 40.41 29.63 68.60 2.03 42.44 16 10 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 11 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 12 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 13 C 0.48 25.11 7.51 86.77 0.65 25.76 16 14 O -0.61 -35.18 16.06 -4.05 -0.07 -35.24 16 15 C 0.11 4.65 6.59 41.95 0.28 4.92 16 16 C -0.16 -5.64 9.55 22.37 0.21 -5.43 16 17 C -0.03 -0.83 10.16 22.35 0.23 -0.60 16 18 C -0.15 -4.11 6.39 -20.10 -0.13 -4.24 16 19 C -0.21 -3.73 11.08 23.46 0.26 -3.47 16 20 C 0.09 1.26 11.82 83.06 0.98 2.25 16 21 N -0.58 -12.75 6.05 -192.16 -1.16 -13.91 16 22 H 0.43 7.99 8.96 -92.70 -0.83 7.16 16 23 C 0.25 7.82 8.43 134.14 1.13 8.95 16 24 N -0.49 -18.89 4.84 -181.86 -0.88 -19.77 16 25 H 0.10 4.40 7.16 -2.39 -0.02 4.39 16 26 H 0.15 5.63 5.42 -2.39 -0.01 5.61 16 27 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.14 5.02 7.63 -2.91 -0.02 5.00 16 29 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 30 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.23 0.85 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -76.25 280.37 5.45 -70.80 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.37 Total: 16.49 kcal Atomic # 6 Polarization: 29.19 SS G_CDS: 6.22 Total: 35.42 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -3.11 Total: -129.91 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.07 Total: -35.24 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -76.25 5.45 -70.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354387920.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.589 kcal (2) G-P(sol) polarization free energy of solvation -76.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds