Wall clock time and date at job start Mon Mar 30 2020 01:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46599 * 2 1 4 4 C 1.50697 * 109.47122 * 239.99820 * 2 1 3 5 5 C 1.38244 * 119.97167 * 120.00032 * 4 2 1 6 6 C 1.38205 * 120.02263 * 179.97438 * 5 4 2 7 7 C 1.38459 * 119.97412 * 0.28333 * 6 5 4 8 8 F 1.35099 * 120.02759 * 179.72396 * 7 6 5 9 9 C 1.38466 * 119.94836 * 359.48301 * 7 6 5 10 10 C 1.38195 * 119.97197 * 0.49199 * 9 7 6 11 11 S 1.81397 * 109.46940 * 119.99662 * 2 1 3 12 12 O 1.42093 * 109.47079 * 188.61269 * 11 2 1 13 13 C 1.81401 * 103.00170 * 304.99994 * 11 2 1 14 14 C 1.53000 * 109.47078 * 179.97438 * 13 11 2 15 15 C 1.50699 * 109.46865 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99764 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00322 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47385 * 89.99840 * 19 17 15 21 21 H 1.48505 * 109.47313 * 209.99975 * 19 17 15 22 22 H 1.48501 * 109.47143 * 329.99700 * 19 17 15 23 23 H 1.08998 * 109.47219 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47188 * 300.00815 * 1 2 3 25 25 H 1.09008 * 109.47178 * 59.99957 * 1 2 3 26 26 H 1.07999 * 119.98932 * 0.02562 * 5 4 2 27 27 H 1.08002 * 120.00949 * 179.97438 * 6 5 4 28 28 H 1.07997 * 120.00962 * 180.25357 * 9 7 6 29 29 H 1.08000 * 119.98534 * 179.78274 * 10 9 7 30 30 H 1.08998 * 109.47388 * 300.00150 * 13 11 2 31 31 H 1.09007 * 109.47144 * 59.99993 * 13 11 2 32 32 H 1.09005 * 109.47435 * 299.99991 * 14 13 11 33 33 H 1.08994 * 109.47227 * 60.00077 * 14 13 11 34 34 H 0.96998 * 120.00263 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.8271 -0.0381 -2.1400 6 6 3.2888 -0.6887 -3.2685 7 6 2.9502 -2.0127 -3.4908 8 9 3.3963 -2.6482 -4.5964 9 6 2.1581 -2.6866 -2.5766 10 6 1.6981 -2.0340 -1.4486 11 16 2.1346 -0.8550 1.4812 12 8 3.5413 -0.6838 1.5859 13 6 1.3148 0.0376 2.8309 14 6 1.7278 -0.5736 4.1713 15 6 1.0462 0.1676 5.2926 16 1 0.3844 0.9918 5.0712 17 6 1.2676 -0.2065 6.6011 18 7 2.0732 -1.2105 6.8706 19 14 0.4234 0.7126 7.9909 20 1 -0.8816 0.0697 8.2887 21 1 1.2815 0.6751 9.2023 22 1 0.1992 2.1238 7.5868 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 3.0880 0.9958 -1.9683 27 1 3.9093 -0.1631 -3.9792 28 1 1.8968 -3.7205 -2.7469 29 1 1.0773 -2.5583 -0.7372 30 1 1.6085 1.0869 2.8037 31 1 0.2338 -0.0403 2.7141 32 1 1.4337 -1.6229 4.1983 33 1 2.8087 -0.4961 4.2884 34 1 2.2287 -1.4740 7.7911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357783826.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:37 Heat of formation + Delta-G solvation = -75.514438 kcal Electronic energy + Delta-G solvation = -17655.618902 eV Core-core repulsion = 14594.070002 eV Total energy + Delta-G solvation = -3061.548901 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.00959 -39.35772 -35.22512 -34.09633 -33.69125 -31.30951 -30.97278 -29.07911 -25.30059 -24.16668 -23.15995 -21.69497 -20.88632 -17.84174 -17.07969 -16.70380 -16.43402 -15.84216 -15.71299 -15.00753 -14.62928 -14.42163 -14.18329 -13.89305 -13.68071 -13.51556 -12.99957 -12.63527 -12.56950 -12.24928 -11.81462 -11.65146 -11.37282 -11.24439 -11.07516 -10.97087 -10.74507 -10.15418 -10.08133 -9.53862 -9.26884 -9.19538 -8.52332 -8.43748 -7.72140 -6.06751 -4.11195 0.92672 1.07214 1.95329 3.08816 3.27589 3.34380 3.37331 3.46230 4.10840 4.21915 4.40754 4.48486 4.57672 4.73292 4.99958 5.10977 5.25961 5.28281 5.29545 5.59740 5.72478 5.80508 5.88451 5.90926 5.96173 6.06050 6.08797 6.14444 6.37405 6.73093 6.77742 7.46272 7.57758 7.88113 8.29031 8.93483 9.53103 11.03870 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.049174 B = 0.003568 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.271287 B = 7846.516522 C = 8011.972394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.386 4.386 3 H 0.094 0.906 4 C -0.054 4.054 5 C -0.087 4.087 6 C -0.149 4.149 7 C 0.087 3.913 8 F -0.143 7.143 9 C -0.145 4.145 10 C -0.093 4.093 11 S 1.221 4.779 12 O -0.844 6.844 13 C -0.415 4.415 14 C 0.038 3.962 15 C -0.519 4.519 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.144 0.856 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.029 0.971 33 H 0.022 0.978 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 -2.267 -19.279 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.500 4.500 3 H 0.112 0.888 4 C -0.055 4.055 5 C -0.106 4.106 6 C -0.168 4.168 7 C 0.067 3.933 8 F -0.122 7.122 9 C -0.164 4.164 10 C -0.112 4.112 11 S 1.422 4.578 12 O -0.840 6.840 13 C -0.555 4.555 14 C -0.001 4.001 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.699 -3.134 -19.155 19.759 hybrid contribution 0.319 2.735 0.639 2.827 sum -3.380 -0.399 -18.516 18.826 Atomic orbital electron populations 1.21519 0.90304 1.03280 1.02914 1.26650 1.03715 1.08561 1.11080 0.88771 1.19282 0.97403 0.94042 0.94810 1.20956 0.96523 1.00159 0.92949 1.21104 1.02627 0.93506 0.99588 1.17720 0.99001 0.91493 0.85063 1.91486 1.87775 1.82046 1.50880 1.21132 0.99499 1.01057 0.94734 1.20992 0.99462 0.93689 0.97073 1.70396 0.90237 1.11328 0.85799 1.93100 1.25310 1.82064 1.83509 1.27655 1.08508 1.08587 1.10745 1.18798 0.97390 0.96283 0.87592 1.21140 1.27671 1.16391 0.90696 0.92450 1.25047 0.95252 0.95210 0.98947 1.69957 1.36167 1.27308 1.19662 0.86540 0.79393 0.80155 0.81605 1.20449 1.21141 1.19935 0.90918 0.91093 0.92238 0.85359 0.84871 0.84335 0.83784 0.90830 0.87339 0.95304 0.95923 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.75 37.16 0.33 -0.82 16 2 C -0.39 -4.73 3.07 -27.88 -0.09 -4.81 16 3 H 0.09 1.22 7.87 -51.92 -0.41 0.81 16 4 C -0.05 -0.64 4.78 -104.62 -0.50 -1.14 16 5 C -0.09 -1.02 9.67 -39.59 -0.38 -1.41 16 6 C -0.15 -1.65 10.03 -39.51 -0.40 -2.05 16 7 C 0.09 0.98 7.30 -39.42 -0.29 0.69 16 8 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 9 C -0.15 -1.46 10.03 -39.51 -0.40 -1.85 16 10 C -0.09 -0.94 8.77 -39.59 -0.35 -1.29 16 11 S 1.22 19.32 12.28 -107.50 -1.32 18.00 16 12 O -0.84 -19.01 18.14 -35.23 -0.64 -19.65 16 13 C -0.42 -7.86 5.26 37.16 0.20 -7.66 16 14 C 0.04 0.96 4.98 -27.88 -0.14 0.82 16 15 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 19 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H 0.07 0.52 7.39 -51.93 -0.38 0.13 16 24 H 0.07 0.67 6.51 -51.93 -0.34 0.33 16 25 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 26 H 0.13 1.37 7.94 -52.49 -0.42 0.96 16 27 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.14 1.02 7.58 -52.49 -0.40 0.62 16 30 H 0.07 1.46 8.14 -51.92 -0.42 1.03 16 31 H 0.11 1.71 6.90 -51.92 -0.36 1.36 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 307.97 15.07 4.64 4.64 Total: -1.00 -35.52 307.97 -8.37 -43.89 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.38 Total: -3.02 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: -2.43 Total: -32.72 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.74 Total: -25.78 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.64 Total: -19.65 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 19.32 SS G_CDS: -1.32 Total: 18.00 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.52 -8.37 -43.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357783826.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.625 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds