Wall clock time and date at job start Mon Mar 30 2020 01:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46599 * 2 1 4 4 C 1.50697 * 109.47122 * 239.99820 * 2 1 3 5 5 C 1.38244 * 119.97167 * 120.00032 * 4 2 1 6 6 C 1.38205 * 120.02263 * 179.97438 * 5 4 2 7 7 C 1.38459 * 119.97412 * 0.28333 * 6 5 4 8 8 F 1.35099 * 120.02759 * 179.72396 * 7 6 5 9 9 C 1.38466 * 119.94836 * 359.48301 * 7 6 5 10 10 C 1.38195 * 119.97197 * 0.49199 * 9 7 6 11 11 S 1.81397 * 109.46940 * 119.99662 * 2 1 3 12 12 O 1.42093 * 109.47079 * 188.61269 * 11 2 1 13 13 C 1.81401 * 103.00170 * 304.99994 * 11 2 1 14 14 C 1.53000 * 109.47078 * 179.97438 * 13 11 2 15 15 C 1.50699 * 109.46865 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99764 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00322 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47385 * 89.99840 * 19 17 15 21 21 H 1.48505 * 109.47313 * 209.99975 * 19 17 15 22 22 H 1.48501 * 109.47143 * 329.99700 * 19 17 15 23 23 H 1.08998 * 109.47219 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47188 * 300.00815 * 1 2 3 25 25 H 1.09008 * 109.47178 * 59.99957 * 1 2 3 26 26 H 1.07999 * 119.98932 * 0.02562 * 5 4 2 27 27 H 1.08002 * 120.00949 * 179.97438 * 6 5 4 28 28 H 1.07997 * 120.00962 * 180.25357 * 9 7 6 29 29 H 1.08000 * 119.98534 * 179.78274 * 10 9 7 30 30 H 1.08998 * 109.47388 * 300.00150 * 13 11 2 31 31 H 1.09007 * 109.47144 * 59.99993 * 13 11 2 32 32 H 1.09005 * 109.47435 * 299.99991 * 14 13 11 33 33 H 1.08994 * 109.47227 * 60.00077 * 14 13 11 34 34 H 0.96998 * 120.00263 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.8271 -0.0381 -2.1400 6 6 3.2888 -0.6887 -3.2685 7 6 2.9502 -2.0127 -3.4908 8 9 3.3963 -2.6482 -4.5964 9 6 2.1581 -2.6866 -2.5766 10 6 1.6981 -2.0340 -1.4486 11 16 2.1346 -0.8550 1.4812 12 8 3.5413 -0.6838 1.5859 13 6 1.3148 0.0376 2.8309 14 6 1.7278 -0.5736 4.1713 15 6 1.0462 0.1676 5.2926 16 1 0.3844 0.9918 5.0712 17 6 1.2676 -0.2065 6.6011 18 7 2.0732 -1.2105 6.8706 19 14 0.4234 0.7126 7.9909 20 1 -0.8816 0.0697 8.2887 21 1 1.2815 0.6751 9.2023 22 1 0.1992 2.1238 7.5868 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 3.0880 0.9958 -1.9683 27 1 3.9093 -0.1631 -3.9792 28 1 1.8968 -3.7205 -2.7469 29 1 1.0773 -2.5583 -0.7372 30 1 1.6085 1.0869 2.8037 31 1 0.2338 -0.0403 2.7141 32 1 1.4337 -1.6229 4.1983 33 1 2.8087 -0.4961 4.2884 34 1 2.2287 -1.4740 7.7911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357783826.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:37 Heat of formation + Delta-G solvation = -98.619236 kcal Electronic energy + Delta-G solvation = -17656.620801 eV Core-core repulsion = 14594.070002 eV Total energy + Delta-G solvation = -3062.550800 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.88552 -40.20092 -36.80841 -35.74511 -34.97581 -32.89907 -32.11704 -29.96430 -27.27441 -25.02885 -23.99555 -23.33811 -22.05735 -18.78814 -18.68110 -18.21109 -17.49737 -16.96828 -16.59319 -16.46894 -16.20261 -15.69266 -15.44532 -15.16223 -14.63452 -14.42981 -14.32865 -14.00925 -13.80083 -13.42882 -13.31184 -12.93281 -12.72930 -12.60809 -12.52344 -12.24914 -11.96553 -11.85311 -11.81321 -11.49235 -10.76957 -10.58343 -10.07856 -9.58304 -9.07493 -8.20604 -6.33824 -0.00906 0.25731 0.71833 1.40991 1.42839 1.53284 1.78145 2.40943 2.59697 2.90812 3.11820 3.28552 3.54443 3.74521 3.97541 4.08123 4.28638 4.30562 4.40534 4.47235 4.49406 4.85763 4.95763 4.98714 5.07132 5.10552 5.15768 5.24937 5.38373 5.45173 5.50857 5.53903 5.77786 5.91231 6.17992 6.81241 7.35754 8.90463 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.049174 B = 0.003568 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.271287 B = 7846.516522 C = 8011.972394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.364 4.364 3 H 0.085 0.915 4 C -0.075 4.075 5 C -0.102 4.102 6 C -0.156 4.156 7 C 0.073 3.927 8 F -0.148 7.148 9 C -0.143 4.143 10 C -0.094 4.094 11 S 1.268 4.732 12 O -0.919 6.919 13 C -0.415 4.415 14 C 0.035 3.965 15 C -0.541 4.541 16 H 0.066 0.934 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.968 3.032 20 H -0.263 1.263 21 H -0.286 1.286 22 H -0.266 1.266 23 H 0.102 0.898 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.131 0.869 27 H 0.147 0.853 28 H 0.165 0.835 29 H 0.177 0.823 30 H 0.059 0.941 31 H 0.146 0.854 32 H 0.026 0.974 33 H -0.027 1.027 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -2.275 -20.236 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.482 4.482 3 H 0.104 0.896 4 C -0.076 4.076 5 C -0.122 4.122 6 C -0.175 4.175 7 C 0.054 3.946 8 F -0.126 7.126 9 C -0.162 4.162 10 C -0.112 4.112 11 S 1.472 4.528 12 O -0.915 6.915 13 C -0.553 4.553 14 C -0.003 4.003 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.200 4.200 18 N -0.573 5.573 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.212 1.212 22 H -0.191 1.191 23 H 0.121 0.879 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.149 0.851 27 H 0.164 0.836 28 H 0.183 0.817 29 H 0.195 0.805 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.044 0.956 33 H -0.009 1.009 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.067 -3.144 -20.073 21.204 hybrid contribution 1.057 2.734 0.745 3.024 sum -5.010 -0.410 -19.328 19.971 Atomic orbital electron populations 1.21673 0.87392 1.05635 1.03737 1.26377 1.05900 1.07501 1.08381 0.89584 1.19399 0.98428 0.95136 0.94683 1.21123 0.96861 1.00680 0.93508 1.21279 1.02749 0.93767 0.99718 1.17994 0.99497 0.91786 0.85346 1.91476 1.87905 1.82084 1.51161 1.21471 0.98442 1.02244 0.94032 1.21404 0.99232 0.92993 0.97591 1.69429 0.87323 1.10571 0.85434 1.92982 1.29526 1.83804 1.85139 1.27569 1.11240 1.07477 1.09061 1.18663 0.94126 0.96620 0.90913 1.21646 1.27763 1.16728 0.91827 0.91553 1.26040 0.95908 0.96070 1.02004 1.70099 1.37778 1.29071 1.20364 0.85403 0.78607 0.79036 0.77737 1.18750 1.21222 1.19062 0.87918 0.90916 0.90794 0.85088 0.83551 0.81695 0.80518 0.92150 0.83584 0.95554 1.00910 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.75 71.98 0.63 -1.27 16 2 C -0.36 -8.19 3.07 29.85 0.09 -8.10 16 3 H 0.09 2.13 7.87 -2.39 -0.02 2.11 16 4 C -0.07 -1.63 4.78 -19.86 -0.09 -1.73 16 5 C -0.10 -2.31 9.67 22.26 0.22 -2.09 16 6 C -0.16 -3.28 10.03 22.31 0.22 -3.05 16 7 C 0.07 1.53 7.30 22.38 0.16 1.70 16 8 F -0.15 -3.23 17.27 44.97 0.78 -2.46 16 9 C -0.14 -2.48 10.03 22.31 0.22 -2.26 16 10 C -0.09 -1.61 8.77 22.26 0.20 -1.41 16 11 S 1.27 39.56 12.28 -56.49 -0.69 38.86 16 12 O -0.92 -42.73 18.14 -148.98 -2.70 -45.43 16 13 C -0.42 -15.58 5.26 71.98 0.38 -15.20 16 14 C 0.03 1.82 4.98 29.85 0.15 1.97 16 15 C -0.54 -30.23 9.11 25.60 0.23 -29.99 16 16 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 17 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 18 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 19 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 H 0.10 0.95 7.39 -2.39 -0.02 0.94 16 24 H 0.07 1.11 6.51 -2.39 -0.02 1.09 16 25 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.13 2.75 7.94 -2.91 -0.02 2.73 16 27 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.18 1.74 7.58 -2.91 -0.02 1.71 16 30 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.15 4.27 6.90 -2.39 -0.02 4.26 16 32 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 33 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 34 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -79.95 307.97 3.65 -76.30 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 1.09 Total: 4.70 kcal Atomic # 6 Polarization: -63.98 SS G_CDS: 2.87 Total: -61.11 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.28 Total: -56.42 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -2.70 Total: -45.43 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 39.56 SS G_CDS: -0.69 Total: 38.86 kcal Total: -79.95 3.65 -76.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357783826.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.321 kcal (2) G-P(sol) polarization free energy of solvation -79.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds