Wall clock time and date at job start Mon Mar 30 2020 01:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46599 * 2 1 4 4 C 1.50697 * 109.47122 * 239.99820 * 2 1 3 5 5 C 1.38244 * 119.97167 * 120.00032 * 4 2 1 6 6 C 1.38205 * 120.02263 * 179.97438 * 5 4 2 7 7 C 1.38459 * 119.97412 * 0.28333 * 6 5 4 8 8 F 1.35099 * 120.02759 * 179.72396 * 7 6 5 9 9 C 1.38466 * 119.94836 * 359.48301 * 7 6 5 10 10 C 1.38195 * 119.97197 * 0.49199 * 9 7 6 11 11 S 1.81397 * 109.46940 * 119.99662 * 2 1 3 12 12 O 1.42099 * 109.47240 * 61.38809 * 11 2 1 13 13 C 1.81401 * 103.00170 * 304.99994 * 11 2 1 14 14 C 1.53000 * 109.47078 * 179.97438 * 13 11 2 15 15 C 1.50699 * 109.46865 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99764 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00322 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47276 * 59.99747 * 19 17 15 21 21 H 1.48502 * 109.47362 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47263 * 299.99796 * 19 17 15 23 23 H 1.08998 * 109.47219 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47188 * 300.00815 * 1 2 3 25 25 H 1.09008 * 109.47178 * 59.99957 * 1 2 3 26 26 H 1.07999 * 119.98932 * 0.02562 * 5 4 2 27 27 H 1.08002 * 120.00949 * 179.97438 * 6 5 4 28 28 H 1.07997 * 120.00962 * 180.25357 * 9 7 6 29 29 H 1.08000 * 119.98534 * 179.78274 * 10 9 7 30 30 H 1.08998 * 109.47388 * 300.00150 * 13 11 2 31 31 H 1.09007 * 109.47144 * 59.99993 * 13 11 2 32 32 H 1.09005 * 109.47435 * 299.99991 * 14 13 11 33 33 H 1.08994 * 109.47227 * 60.00077 * 14 13 11 34 34 H 0.96998 * 120.00263 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.8271 -0.0381 -2.1400 6 6 3.2888 -0.6887 -3.2685 7 6 2.9502 -2.0127 -3.4908 8 9 3.3963 -2.6482 -4.5964 9 6 2.1581 -2.6866 -2.5766 10 6 1.6981 -2.0340 -1.4486 11 16 2.1346 -0.8550 1.4812 12 8 1.6876 -2.2038 1.4651 13 6 1.3148 0.0376 2.8309 14 6 1.7278 -0.5736 4.1713 15 6 1.0462 0.1676 5.2926 16 1 0.3844 0.9918 5.0712 17 6 1.2676 -0.2065 6.6011 18 7 2.0732 -1.2105 6.8706 19 14 0.4234 0.7126 7.9909 20 1 -1.0492 0.6067 7.8318 21 1 0.8251 0.1201 9.2921 22 1 0.8237 2.1422 7.9540 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 3.0880 0.9958 -1.9683 27 1 3.9093 -0.1631 -3.9792 28 1 1.8968 -3.7205 -2.7469 29 1 1.0773 -2.5583 -0.7372 30 1 1.6085 1.0869 2.8037 31 1 0.2338 -0.0403 2.7141 32 1 1.4337 -1.6229 4.1983 33 1 2.8087 -0.4961 4.2884 34 1 2.2287 -1.4740 7.7911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357783829.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:43 Heat of formation + Delta-G solvation = -96.209218 kcal Electronic energy + Delta-G solvation = -17725.870156 eV Core-core repulsion = 14663.423863 eV Total energy + Delta-G solvation = -3062.446294 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.90332 -40.21506 -36.69221 -35.71971 -35.02275 -32.87231 -32.09977 -30.07297 -27.25046 -25.09218 -23.97423 -23.29737 -22.02005 -18.79505 -18.64538 -18.32227 -17.37222 -16.97456 -16.60835 -16.48027 -16.10782 -15.77475 -15.29879 -15.17493 -14.57406 -14.42519 -14.31713 -14.00043 -13.62245 -13.51138 -13.39422 -13.13584 -12.84921 -12.62864 -12.54907 -12.24479 -11.97174 -11.89164 -11.72837 -11.46429 -10.70151 -10.57440 -10.06963 -9.63097 -8.94611 -8.19985 -6.33207 -0.00542 0.26856 0.80818 1.40696 1.43618 1.51680 1.85879 2.41086 2.62350 2.93555 3.12268 3.27423 3.60227 3.74606 3.96307 4.06508 4.29892 4.34836 4.38434 4.44961 4.52971 4.62210 4.84377 5.00670 5.03335 5.04589 5.13482 5.17349 5.27938 5.45592 5.53277 5.54634 5.79224 5.91947 6.19356 6.82197 7.36273 8.90713 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.051144 B = 0.003579 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.338625 B = 7821.556162 C = 8016.648982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.365 4.365 3 H 0.179 0.821 4 C -0.077 4.077 5 C -0.067 4.067 6 C -0.146 4.146 7 C 0.078 3.922 8 F -0.148 7.148 9 C -0.163 4.163 10 C -0.108 4.108 11 S 1.267 4.733 12 O -0.904 6.904 13 C -0.416 4.416 14 C 0.036 3.964 15 C -0.541 4.541 16 H 0.066 0.934 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.257 1.257 23 H 0.031 0.969 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.181 0.819 27 H 0.166 0.834 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.065 0.935 32 H -0.026 1.026 33 H 0.022 0.978 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 7.419 -20.239 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.481 4.481 3 H 0.197 0.803 4 C -0.078 4.078 5 C -0.086 4.086 6 C -0.165 4.165 7 C 0.059 3.941 8 F -0.127 7.127 9 C -0.182 4.182 10 C -0.127 4.127 11 S 1.469 4.531 12 O -0.900 6.900 13 C -0.554 4.554 14 C -0.002 4.002 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.182 1.182 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.198 0.802 27 H 0.184 0.816 28 H 0.152 0.848 29 H 0.132 0.868 30 H 0.159 0.841 31 H 0.083 0.917 32 H -0.008 1.008 33 H 0.040 0.960 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.401 6.502 -20.081 21.561 hybrid contribution -2.787 -0.780 0.745 2.988 sum 1.614 5.722 -19.336 20.229 Atomic orbital electron populations 1.21869 0.93123 1.01391 1.04012 1.26555 1.01958 1.11409 1.08214 0.80322 1.19391 0.99184 0.93199 0.96055 1.21366 0.94348 1.01669 0.91223 1.21495 1.02406 0.92321 1.00266 1.17962 0.98938 0.92606 0.84617 1.91472 1.87755 1.82435 1.51013 1.21186 1.00505 1.01455 0.95062 1.21155 0.99615 0.95364 0.96539 1.69764 1.14375 0.83533 0.85379 1.92982 1.82128 1.29851 1.85032 1.27550 1.07738 1.11160 1.08920 1.18636 0.96715 0.93773 0.91076 1.21646 1.27826 1.16696 0.91836 0.91564 1.26041 0.95961 0.96024 1.02036 1.70094 1.38023 1.28918 1.20355 0.85474 0.78627 0.79324 0.77473 1.19846 1.21001 1.18156 0.94965 0.91340 0.90014 0.80192 0.81621 0.84786 0.86843 0.84129 0.91653 1.00809 0.96002 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.75 71.98 0.63 -2.81 16 2 C -0.36 -7.45 3.07 29.85 0.09 -7.36 16 3 H 0.18 1.92 7.87 -2.39 -0.02 1.90 16 4 C -0.08 -1.64 4.78 -19.86 -0.09 -1.73 16 5 C -0.07 -0.99 9.67 22.26 0.22 -0.77 16 6 C -0.15 -2.33 10.03 22.31 0.22 -2.11 16 7 C 0.08 1.70 7.30 22.38 0.16 1.86 16 8 F -0.15 -3.36 17.27 44.97 0.78 -2.59 16 9 C -0.16 -4.02 10.03 22.31 0.22 -3.80 16 10 C -0.11 -2.91 8.44 22.26 0.19 -2.72 16 11 S 1.27 37.98 12.60 -56.49 -0.71 37.27 16 12 O -0.90 -39.33 16.16 -148.98 -2.41 -41.74 16 13 C -0.42 -15.27 5.26 71.98 0.38 -14.89 16 14 C 0.04 1.87 4.98 29.85 0.15 2.02 16 15 C -0.54 -30.27 9.11 25.60 0.23 -30.03 16 16 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 17 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 18 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 19 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 H 0.03 0.92 7.39 -2.39 -0.02 0.91 16 24 H 0.07 1.61 6.51 -2.39 -0.02 1.59 16 25 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.18 1.10 7.94 -2.91 -0.02 1.08 16 27 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 29 H 0.11 3.74 6.21 -2.91 -0.02 3.72 16 30 H 0.14 4.07 8.14 -2.39 -0.02 4.05 16 31 H 0.06 2.52 6.90 -2.39 -0.02 2.50 16 32 H -0.03 -1.61 8.14 -2.38 -0.02 -1.63 16 33 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -78.15 304.61 3.93 -74.22 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.09 Total: 5.92 kcal Atomic # 6 Polarization: -64.89 SS G_CDS: 2.86 Total: -62.03 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.28 Total: -56.75 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -2.41 Total: -41.74 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.59 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 37.98 SS G_CDS: -0.71 Total: 37.27 kcal Total: -78.15 3.93 -74.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357783829.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.989 kcal (2) G-P(sol) polarization free energy of solvation -78.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds