Wall clock time and date at job start Mon Mar 30 2020 00:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47500 * 2 1 4 4 N 1.29414 * 125.70010 * 90.02073 * 3 2 1 5 5 N 1.26396 * 116.47623 * 179.73746 * 4 3 2 6 6 C 1.29409 * 116.47502 * 359.97438 * 5 4 3 7 7 C 1.50707 * 125.69372 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.46949 * 89.97852 * 7 6 5 9 9 C 1.34772 * 120.00003 * 180.02562 * 8 7 6 10 10 O 1.21587 * 120.00170 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99962 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99966 * 179.97438 * 11 9 8 13 13 C 1.50694 * 109.47190 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00122 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00060 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00161 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99829 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47193 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46881 * 120.00249 * 17 15 13 20 20 H 1.48497 * 109.47300 * 240.00023 * 17 15 13 21 21 S 1.71215 * 108.61179 * 0.02562 * 6 5 4 22 22 H 1.08994 * 109.46926 * 300.00592 * 1 2 3 23 23 H 1.09001 * 109.46910 * 60.00302 * 1 2 3 24 24 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47102 * 239.99217 * 2 1 3 26 26 H 1.08996 * 109.46894 * 120.00188 * 2 1 3 27 27 H 1.09000 * 109.47136 * 209.97649 * 7 6 5 28 28 H 1.09001 * 109.46989 * 329.97993 * 7 6 5 29 29 H 0.96998 * 120.00050 * 359.97438 * 8 7 6 30 30 H 0.97000 * 119.99965 * 0.02562 * 11 9 8 31 31 H 1.08999 * 109.47211 * 300.00561 * 12 11 9 32 32 H 1.09007 * 109.46866 * 60.00215 * 12 11 9 33 33 H 0.96994 * 120.00292 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2846 2.1326 1.0509 5 7 2.7053 3.3071 0.8483 6 6 2.8378 3.6673 -0.3875 7 6 3.3211 5.0128 -0.8643 8 7 4.7781 4.9831 -1.0146 9 6 5.4350 6.0832 -1.4326 10 8 4.8184 7.1002 -1.6853 11 7 6.7754 6.0560 -1.5704 12 6 7.4894 7.2517 -2.0253 13 6 8.9660 6.9589 -2.0949 14 1 9.3358 5.9802 -1.8268 15 6 9.8452 7.9408 -2.5000 16 7 9.3951 9.1330 -2.8251 17 14 11.6756 7.5781 -2.5856 18 1 11.9219 6.1736 -2.1711 19 1 12.1545 7.7740 -3.9777 20 1 12.4057 8.4981 -1.6770 21 16 2.3723 2.3602 -1.3906 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5140 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.8614 5.2445 -1.8250 28 1 3.0464 5.7763 -0.1364 29 1 5.2701 4.1719 -0.8127 30 1 7.2673 5.2446 -1.3692 31 1 7.1287 7.5363 -3.0137 32 1 7.3132 8.0684 -1.3252 33 1 10.0136 9.8239 -3.1097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359029038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:28 Heat of formation + Delta-G solvation = 22.688340 kcal Electronic energy + Delta-G solvation = -17268.599126 eV Core-core repulsion = 14263.521330 eV Total energy + Delta-G solvation = -3005.077796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.62092 -39.26313 -35.58550 -34.50895 -34.01334 -32.36019 -30.96920 -28.28140 -26.92466 -25.23463 -23.55371 -22.47232 -20.34609 -20.05621 -19.61669 -18.21548 -16.64658 -16.09743 -15.58235 -15.51144 -15.03609 -14.78710 -14.61500 -14.11224 -13.69412 -13.34366 -13.19280 -12.98657 -12.89148 -12.22028 -11.98047 -11.78225 -11.73156 -10.93681 -10.91406 -10.72406 -10.48225 -10.31713 -10.17720 -10.00736 -9.46851 -9.35892 -8.93954 -8.71991 -7.81162 -6.15738 -4.22226 0.03601 0.55200 1.04208 2.19814 3.24262 3.26257 3.32291 3.36067 3.61126 3.85267 4.10337 4.32946 4.39939 4.65177 4.73931 4.82754 5.05701 5.20303 5.20609 5.29771 5.40697 5.47400 5.57503 5.66179 6.58858 7.02799 7.46643 7.52151 7.55874 7.85441 8.01419 8.24875 8.73950 8.88200 9.26365 9.45692 10.94543 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042947 B = 0.003014 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.813291 B = 9288.500642 C = 9611.580716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 C -0.018 4.018 4 N -0.261 5.261 5 N -0.240 5.240 6 C -0.033 4.033 7 C 0.225 3.775 8 N -0.754 5.754 9 C 0.697 3.303 10 O -0.597 6.597 11 N -0.726 5.726 12 C 0.266 3.734 13 C -0.542 4.542 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 S 0.191 5.809 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.393 0.607 30 H 0.387 0.613 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.074 -19.693 2.370 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 C -0.296 4.296 4 N -0.099 5.099 5 N -0.078 5.078 6 C -0.312 4.312 7 C 0.097 3.903 8 N -0.413 5.413 9 C 0.397 3.603 10 O -0.475 6.475 11 N -0.378 5.378 12 C 0.145 3.855 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 S 0.435 5.565 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.227 0.773 30 H 0.219 0.781 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.523 -18.426 2.400 24.865 hybrid contribution 1.486 -0.821 0.270 1.719 sum -15.038 -19.246 2.670 24.570 Atomic orbital electron populations 1.21795 0.93034 1.02995 1.02914 1.20190 0.97016 0.86413 1.04897 1.29392 1.03771 1.04280 0.92203 1.71504 1.12748 0.98830 1.26787 1.71513 1.12125 1.07166 1.17011 1.29286 1.05674 1.03523 0.92700 1.19353 0.81249 0.87763 1.01979 1.45069 1.05897 1.15040 1.75341 1.16031 0.82850 0.82732 0.78686 1.90892 1.67271 1.31226 1.58135 1.45725 1.03836 1.17861 1.70339 1.19027 0.89951 0.81248 0.95250 1.21254 0.91069 0.98683 1.46994 0.91890 1.24946 0.99458 0.94777 0.94865 1.69983 1.35198 1.03078 1.43986 0.86355 0.84319 0.78397 0.77781 1.19678 1.20809 1.20794 1.83835 1.56501 1.04931 1.11245 0.91763 0.92203 0.90934 0.89104 0.88231 0.89099 0.88260 0.77342 0.78052 0.95588 0.95579 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.90 37.16 0.37 -0.35 16 2 C -0.04 -0.25 6.54 -27.88 -0.18 -0.43 16 3 C -0.02 -0.17 6.78 -13.30 -0.09 -0.26 16 4 N -0.26 -3.33 11.66 32.58 0.38 -2.95 16 5 N -0.24 -3.33 11.66 32.58 0.38 -2.95 16 6 C -0.03 -0.39 6.90 -13.30 -0.09 -0.48 16 7 C 0.23 2.95 6.27 -5.19 -0.03 2.92 16 8 N -0.75 -11.32 5.55 -66.41 -0.37 -11.69 16 9 C 0.70 14.20 8.57 -86.92 -0.74 13.46 16 10 O -0.60 -14.58 16.34 5.29 0.09 -14.49 16 11 N -0.73 -15.46 5.55 -66.41 -0.37 -15.83 16 12 C 0.27 7.10 5.43 -5.20 -0.03 7.07 16 13 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 14 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.88 -26.10 13.29 55.43 0.74 -25.37 16 17 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 S 0.19 1.64 23.04 -107.50 -2.48 -0.84 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.39 5.01 8.48 -40.82 -0.35 4.66 16 30 H 0.39 7.08 8.34 -40.82 -0.34 6.74 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 309.06 15.07 4.66 4.66 Total: -1.00 -34.06 309.06 -7.24 -41.30 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.02 Total: 3.73 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -1.22 Total: 8.55 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.76 Total: -58.77 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.09 Total: -14.49 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.48 Total: -0.84 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.06 -7.24 -41.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359029038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.988 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds