Wall clock time and date at job start Mon Mar 30 2020 00:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47500 * 2 1 4 4 N 1.29414 * 125.70010 * 90.02073 * 3 2 1 5 5 N 1.26396 * 116.47623 * 179.73746 * 4 3 2 6 6 C 1.29409 * 116.47502 * 359.97438 * 5 4 3 7 7 C 1.50707 * 125.69372 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.46949 * 89.97852 * 7 6 5 9 9 C 1.34772 * 120.00003 * 180.02562 * 8 7 6 10 10 O 1.21587 * 120.00170 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99962 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99966 * 179.97438 * 11 9 8 13 13 C 1.50694 * 109.47190 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00122 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00060 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00161 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99829 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47193 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46881 * 120.00249 * 17 15 13 20 20 H 1.48497 * 109.47300 * 240.00023 * 17 15 13 21 21 S 1.71215 * 108.61179 * 0.02562 * 6 5 4 22 22 H 1.08994 * 109.46926 * 300.00592 * 1 2 3 23 23 H 1.09001 * 109.46910 * 60.00302 * 1 2 3 24 24 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47102 * 239.99217 * 2 1 3 26 26 H 1.08996 * 109.46894 * 120.00188 * 2 1 3 27 27 H 1.09000 * 109.47136 * 209.97649 * 7 6 5 28 28 H 1.09001 * 109.46989 * 329.97993 * 7 6 5 29 29 H 0.96998 * 120.00050 * 359.97438 * 8 7 6 30 30 H 0.97000 * 119.99965 * 0.02562 * 11 9 8 31 31 H 1.08999 * 109.47211 * 300.00561 * 12 11 9 32 32 H 1.09007 * 109.46866 * 60.00215 * 12 11 9 33 33 H 0.96994 * 120.00292 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2846 2.1326 1.0509 5 7 2.7053 3.3071 0.8483 6 6 2.8378 3.6673 -0.3875 7 6 3.3211 5.0128 -0.8643 8 7 4.7781 4.9831 -1.0146 9 6 5.4350 6.0832 -1.4326 10 8 4.8184 7.1002 -1.6853 11 7 6.7754 6.0560 -1.5704 12 6 7.4894 7.2517 -2.0253 13 6 8.9660 6.9589 -2.0949 14 1 9.3358 5.9802 -1.8268 15 6 9.8452 7.9408 -2.5000 16 7 9.3951 9.1330 -2.8251 17 14 11.6756 7.5781 -2.5856 18 1 11.9219 6.1736 -2.1711 19 1 12.1545 7.7740 -3.9777 20 1 12.4057 8.4981 -1.6770 21 16 2.3723 2.3602 -1.3906 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5140 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.8614 5.2445 -1.8250 28 1 3.0464 5.7763 -0.1364 29 1 5.2701 4.1719 -0.8127 30 1 7.2673 5.2446 -1.3692 31 1 7.1287 7.5363 -3.0137 32 1 7.3132 8.0684 -1.3252 33 1 10.0136 9.8239 -3.1097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359029038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:28 Heat of formation + Delta-G solvation = -4.284388 kcal Electronic energy + Delta-G solvation = -17269.768751 eV Core-core repulsion = 14263.521330 eV Total energy + Delta-G solvation = -3006.247421 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.49557 -40.91225 -36.77536 -36.01885 -35.23036 -34.34316 -31.99530 -29.61969 -28.43552 -26.26405 -24.59098 -24.02788 -21.98212 -20.98592 -20.42938 -19.86074 -18.16238 -17.70055 -16.86452 -16.64930 -16.37104 -16.33220 -15.56825 -15.08640 -14.94784 -14.87381 -14.40794 -14.08015 -13.95673 -13.73084 -13.51670 -12.86753 -12.74610 -12.65135 -12.21471 -12.18280 -11.54856 -11.45519 -11.41833 -11.27975 -10.86478 -10.81160 -10.74192 -10.40081 -9.66585 -8.27540 -6.43461 -0.76801 -0.21193 0.24582 1.27704 1.44697 1.45754 1.58945 1.90501 2.17618 2.40134 2.75999 3.07684 3.35636 3.48091 3.73704 4.00538 4.24820 4.29512 4.43021 4.46491 4.74099 4.97386 5.04640 5.07299 5.26132 5.29002 5.30350 5.48555 5.63644 5.85328 6.13559 6.67932 7.19536 7.26595 7.41078 7.64090 8.84928 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042947 B = 0.003014 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.813291 B = 9288.500642 C = 9611.580716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.014 4.014 4 N -0.297 5.297 5 N -0.271 5.271 6 C -0.056 4.056 7 C 0.226 3.774 8 N -0.731 5.731 9 C 0.699 3.301 10 O -0.640 6.640 11 N -0.721 5.721 12 C 0.284 3.716 13 C -0.554 4.554 14 H 0.083 0.917 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.985 3.015 18 H -0.254 1.254 19 H -0.278 1.278 20 H -0.280 1.280 21 S 0.263 5.737 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.408 0.592 30 H 0.405 0.595 31 H -0.009 1.009 32 H -0.013 1.013 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.651 -22.721 1.848 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.291 4.291 4 N -0.135 5.135 5 N -0.110 5.110 6 C -0.335 4.335 7 C 0.099 3.901 8 N -0.390 5.390 9 C 0.399 3.601 10 O -0.522 6.522 11 N -0.374 5.374 12 C 0.161 3.839 13 C -0.592 4.592 14 H 0.101 0.899 15 C -0.196 4.196 16 N -0.568 5.568 17 Si 0.808 3.192 18 H -0.178 1.178 19 H -0.203 1.203 20 H -0.206 1.206 21 S 0.508 5.492 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.112 0.888 25 H 0.137 0.863 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.244 0.756 30 H 0.240 0.760 31 H 0.009 0.991 32 H 0.005 0.995 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.127 -21.542 1.901 26.977 hybrid contribution 1.207 0.021 0.414 1.276 sum -14.920 -21.521 2.315 26.290 Atomic orbital electron populations 1.21805 0.92255 1.04245 1.02257 1.20474 0.97528 0.84308 1.06486 1.30066 1.01620 1.05414 0.92047 1.71491 1.14703 0.98966 1.28390 1.71479 1.12924 1.08167 1.18420 1.28964 1.07064 1.04015 0.93425 1.19355 0.79663 0.88801 1.02325 1.44781 1.06880 1.13870 1.73448 1.16095 0.82394 0.83285 0.78347 1.90863 1.68059 1.33365 1.59901 1.45308 1.04382 1.17097 1.70628 1.18461 0.90837 0.82160 0.92419 1.21620 0.91087 0.99625 1.46826 0.89924 1.26041 1.05072 0.94357 0.94093 1.70138 1.37323 1.04408 1.44968 0.85109 0.77271 0.78990 0.77810 1.17774 1.20346 1.20580 1.83551 1.54592 1.02121 1.08929 0.93442 0.91851 0.88771 0.86314 0.87825 0.87896 0.89676 0.75605 0.76003 0.99090 0.99507 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.90 71.98 0.71 -0.33 16 2 C -0.05 -0.39 6.54 29.85 0.20 -0.20 16 3 C -0.01 -0.22 6.78 88.46 0.60 0.38 16 4 N -0.30 -7.34 11.66 -50.85 -0.59 -7.94 16 5 N -0.27 -7.42 11.66 -50.85 -0.59 -8.01 16 6 C -0.06 -1.26 6.90 88.47 0.61 -0.65 16 7 C 0.23 5.86 6.27 85.64 0.54 6.39 16 8 N -0.73 -21.50 5.55 -482.28 -2.68 -24.18 16 9 C 0.70 28.79 8.57 179.05 1.53 30.32 16 10 O -0.64 -32.27 16.34 -3.99 -0.07 -32.33 16 11 N -0.72 -30.93 5.55 -482.29 -2.68 -33.61 16 12 C 0.28 15.68 5.43 85.63 0.46 16.14 16 13 C -0.55 -30.10 9.28 25.60 0.24 -29.87 16 14 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 15 C 0.00 0.22 5.46 84.66 0.46 0.68 16 16 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 17 Si 0.98 42.31 29.54 68.60 2.03 44.34 16 18 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 S 0.26 3.86 23.04 -56.49 -1.30 2.56 16 22 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 26 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.41 9.79 8.48 -92.71 -0.79 9.00 16 30 H 0.40 14.38 8.34 -92.71 -0.77 13.60 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -76.15 309.06 -0.65 -76.80 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -0.41 Total: 15.19 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 5.35 Total: 22.88 kcal Atomic # 7 Polarization: -123.19 SS G_CDS: -6.26 Total: -129.44 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.07 Total: -32.33 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.30 Total: 2.56 kcal Total: -76.15 -0.65 -76.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359029038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.520 kcal (2) G-P(sol) polarization free energy of solvation -76.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds