Wall clock time and date at job start Mon Mar 30 2020 00:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47441 * 270.00581 * 3 2 1 5 5 H 1.48506 * 109.47063 * 30.00633 * 3 2 1 6 6 H 1.48497 * 109.46916 * 150.00307 * 3 2 1 7 7 C 1.37882 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47000 * 179.97438 * 10 9 7 12 12 S 1.81408 * 109.47120 * 180.02562 * 11 10 9 13 13 C 1.81395 * 103.00056 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46970 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.46776 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46909 * 180.02562 * 15 14 13 17 17 C 1.38423 * 122.53613 * 270.00211 * 16 15 14 18 18 C 1.33390 * 114.91977 * 180.02562 * 17 16 15 19 19 S 1.75887 * 109.59565 * 359.75483 * 18 17 16 20 20 C 1.33391 * 122.54338 * 90.02238 * 16 15 14 21 21 H 0.97002 * 120.00020 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47355 * 59.99689 * 9 7 2 23 23 H 1.09004 * 109.47368 * 300.00278 * 9 7 2 24 24 H 1.09004 * 109.47101 * 60.00316 * 10 9 7 25 25 H 1.08999 * 109.47204 * 299.99805 * 10 9 7 26 26 H 1.08998 * 109.47001 * 60.00678 * 11 10 9 27 27 H 1.08999 * 109.47243 * 300.00100 * 11 10 9 28 28 H 1.09005 * 109.47390 * 59.99719 * 13 12 11 29 29 H 1.09007 * 109.47181 * 299.99910 * 13 12 11 30 30 H 1.08994 * 109.46921 * 60.00081 * 14 13 12 31 31 H 1.08994 * 109.47207 * 299.99773 * 14 13 12 32 32 H 1.08994 * 109.47301 * 60.00348 * 15 14 13 33 33 H 1.09003 * 109.46866 * 299.99784 * 15 14 13 34 34 H 1.08001 * 122.53963 * 0.04211 * 17 16 15 35 35 H 1.07998 * 125.20164 * 180.02562 * 18 17 16 36 36 H 1.08002 * 125.19887 * 359.95301 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 16 2.6590 -6.3659 0.0009 13 6 1.5807 -7.8246 0.0008 14 6 2.4376 -9.0922 0.0008 15 6 1.5280 -10.3226 0.0013 16 6 2.3719 -11.5711 0.0019 17 6 2.7889 -12.1884 -1.1648 18 6 3.5289 -13.2840 -0.9874 19 16 3.7386 -13.5820 0.7333 20 6 2.7734 -12.1653 1.1267 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8719 -3.6044 0.8895 25 1 2.8719 -3.6044 -0.8905 26 1 0.8533 -5.0451 -0.8897 27 1 0.8538 -5.0445 0.8903 28 1 0.9518 -7.8116 -0.8894 29 1 0.9512 -7.8112 0.8906 30 1 3.0667 -9.1055 0.8907 31 1 3.0667 -9.1055 -0.8892 32 1 0.8986 -10.3095 -0.8884 33 1 0.8992 -10.3091 0.8916 34 1 2.5346 -11.8114 -2.1444 35 1 3.9402 -13.8923 -1.7793 36 1 2.5446 -11.8257 2.1261 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360935871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:40 Heat of formation + Delta-G solvation = -4.832907 kcal Electronic energy + Delta-G solvation = -14759.001325 eV Core-core repulsion = 12266.730582 eV Total energy + Delta-G solvation = -2492.270743 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.78782 -34.54979 -34.41970 -32.01262 -30.20067 -27.61088 -27.18836 -23.81827 -23.20907 -21.73832 -20.15298 -19.01414 -17.90936 -16.46229 -16.00127 -15.55394 -15.18354 -14.55212 -14.46479 -14.19588 -13.58144 -13.28643 -13.16670 -12.88597 -12.46990 -12.27172 -12.17495 -11.79162 -11.69428 -11.40633 -11.00016 -10.90911 -10.86288 -10.84439 -10.48358 -9.78086 -9.71834 -9.29530 -9.11848 -9.07500 -8.65213 -8.36529 -7.41265 -6.01574 -4.03953 0.71129 1.37342 1.69091 1.91155 2.43058 2.92810 3.32291 3.38269 3.42403 4.45668 4.49831 4.61368 4.78069 4.94963 5.09656 5.12225 5.26141 5.33405 5.34322 5.48463 5.52711 5.57312 5.66421 5.70493 5.83983 6.03375 6.14518 6.14763 6.23042 6.56947 6.73311 7.03036 7.63791 7.76084 7.97519 8.39603 9.02525 9.60158 11.09775 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.072671 B = 0.002158 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.204128 B =12970.330240 C =13078.834896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.095 4.095 11 C -0.070 4.070 12 S -0.286 6.286 13 C -0.087 4.087 14 C -0.094 4.094 15 C -0.057 4.057 16 C -0.097 4.097 17 C -0.129 4.129 18 C -0.212 4.212 19 S 0.084 5.916 20 C -0.210 4.210 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -27.577 -0.129 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.218 4.218 12 S -0.057 6.057 13 C -0.236 4.236 14 C -0.133 4.133 15 C -0.099 4.099 16 C -0.110 4.110 17 C -0.160 4.160 18 C -0.348 4.348 19 S 0.348 5.652 20 C -0.346 4.346 21 H 0.070 0.930 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.457 -28.560 0.732 29.086 hybrid contribution -1.661 1.941 -0.844 2.691 sum 3.796 -26.619 -0.112 26.888 Atomic orbital electron populations 1.69965 1.06069 1.26656 1.50855 1.25032 0.94882 0.99327 0.95279 0.86562 0.79851 0.83289 0.78132 1.20624 1.21217 1.19817 1.21227 0.93136 0.90865 1.50611 0.92534 1.19105 0.93818 0.90897 0.97366 1.21467 0.99133 0.91229 1.01567 1.23600 0.98734 0.95257 1.04246 1.86882 1.19088 1.01648 1.98129 1.23324 1.00261 0.95325 1.04674 1.21282 0.97588 0.90770 1.03679 1.20354 0.96374 0.89895 1.03246 1.18954 1.01414 0.98602 0.91991 1.20152 1.00200 0.96031 0.99573 1.25602 1.06992 1.03195 0.98963 1.84292 1.52071 1.27841 1.01010 1.25501 1.06011 1.00495 1.02560 0.92978 0.96451 0.96452 0.92410 0.92404 0.90624 0.90634 0.90322 0.90346 0.90945 0.90870 0.90598 0.90740 0.84133 0.81915 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.70 4.97 -27.89 -0.14 0.56 16 10 C -0.09 -2.01 5.16 -26.73 -0.14 -2.15 16 11 C -0.07 -1.23 5.94 37.16 0.22 -1.01 16 12 S -0.29 -4.46 21.74 -107.50 -2.34 -6.79 16 13 C -0.09 -0.99 5.94 37.16 0.22 -0.77 16 14 C -0.09 -0.92 5.20 -26.73 -0.14 -1.06 16 15 C -0.06 -0.45 5.47 -27.88 -0.15 -0.61 16 16 C -0.10 -0.83 5.06 -106.25 -0.54 -1.37 16 17 C -0.13 -1.05 9.98 -41.21 -0.41 -1.46 16 18 C -0.21 -1.60 11.23 29.04 0.33 -1.27 16 19 S 0.08 0.65 23.34 -107.50 -2.51 -1.86 16 20 C -0.21 -1.74 10.98 29.04 0.32 -1.42 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 28 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 33 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -30.36 331.61 -10.86 -41.22 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.88 Total: -3.87 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -0.84 Total: -24.23 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -4.85 Total: -8.65 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.36 -10.86 -41.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360935871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.384 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds