Wall clock time and date at job start Mon Mar 30 2020 00:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47441 * 270.00581 * 3 2 1 5 5 H 1.48506 * 109.47063 * 30.00633 * 3 2 1 6 6 H 1.48497 * 109.46916 * 150.00307 * 3 2 1 7 7 C 1.37882 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47000 * 179.97438 * 10 9 7 12 12 S 1.81408 * 109.47120 * 180.02562 * 11 10 9 13 13 C 1.81395 * 103.00056 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46970 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.46776 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46909 * 180.02562 * 15 14 13 17 17 C 1.38423 * 122.53613 * 270.00211 * 16 15 14 18 18 C 1.33390 * 114.91977 * 180.02562 * 17 16 15 19 19 S 1.75887 * 109.59565 * 359.75483 * 18 17 16 20 20 C 1.33391 * 122.54338 * 90.02238 * 16 15 14 21 21 H 0.97002 * 120.00020 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47355 * 59.99689 * 9 7 2 23 23 H 1.09004 * 109.47368 * 300.00278 * 9 7 2 24 24 H 1.09004 * 109.47101 * 60.00316 * 10 9 7 25 25 H 1.08999 * 109.47204 * 299.99805 * 10 9 7 26 26 H 1.08998 * 109.47001 * 60.00678 * 11 10 9 27 27 H 1.08999 * 109.47243 * 300.00100 * 11 10 9 28 28 H 1.09005 * 109.47390 * 59.99719 * 13 12 11 29 29 H 1.09007 * 109.47181 * 299.99910 * 13 12 11 30 30 H 1.08994 * 109.46921 * 60.00081 * 14 13 12 31 31 H 1.08994 * 109.47207 * 299.99773 * 14 13 12 32 32 H 1.08994 * 109.47301 * 60.00348 * 15 14 13 33 33 H 1.09003 * 109.46866 * 299.99784 * 15 14 13 34 34 H 1.08001 * 122.53963 * 0.04211 * 17 16 15 35 35 H 1.07998 * 125.20164 * 180.02562 * 18 17 16 36 36 H 1.08002 * 125.19887 * 359.95301 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 16 2.6590 -6.3659 0.0009 13 6 1.5807 -7.8246 0.0008 14 6 2.4376 -9.0922 0.0008 15 6 1.5280 -10.3226 0.0013 16 6 2.3719 -11.5711 0.0019 17 6 2.7889 -12.1884 -1.1648 18 6 3.5289 -13.2840 -0.9874 19 16 3.7386 -13.5820 0.7333 20 6 2.7734 -12.1653 1.1267 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8719 -3.6044 0.8895 25 1 2.8719 -3.6044 -0.8905 26 1 0.8533 -5.0451 -0.8897 27 1 0.8538 -5.0445 0.8903 28 1 0.9518 -7.8116 -0.8894 29 1 0.9512 -7.8112 0.8906 30 1 3.0667 -9.1055 0.8907 31 1 3.0667 -9.1055 -0.8892 32 1 0.8986 -10.3095 -0.8884 33 1 0.8992 -10.3091 0.8916 34 1 2.5346 -11.8114 -2.1444 35 1 3.9402 -13.8923 -1.7793 36 1 2.5446 -11.8257 2.1261 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360935871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:39 Heat of formation + Delta-G solvation = -18.694267 kcal Electronic energy + Delta-G solvation = -14759.602399 eV Core-core repulsion = 12266.730582 eV Total energy + Delta-G solvation = -2492.871817 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.38795 -36.36784 -35.28111 -34.04847 -30.85122 -29.43815 -28.01225 -25.45271 -24.18791 -22.65285 -21.84786 -19.60413 -18.57502 -18.48975 -17.08006 -16.60731 -16.50174 -16.16120 -15.77804 -15.18334 -14.53506 -14.44759 -14.01834 -13.92084 -13.68119 -13.58665 -13.45728 -12.88970 -12.81586 -12.71736 -12.63185 -12.45821 -12.24557 -11.72632 -11.64359 -11.55945 -11.36938 -11.09761 -10.85375 -10.57044 -9.68696 -9.26124 -8.65543 -8.21903 -6.32951 0.11805 0.71675 0.81010 1.11562 1.40178 1.41396 1.52816 1.70654 1.82127 2.40630 3.11280 3.79460 3.91907 4.03825 4.10207 4.12604 4.29086 4.40680 4.46213 4.58675 4.63760 4.67906 4.73410 4.81428 4.89444 4.96944 5.02399 5.12658 5.19291 5.29184 5.48029 5.55545 5.62454 5.67264 5.81283 6.21680 6.82538 7.36127 8.89801 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.072671 B = 0.002158 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.204128 B =12970.330240 C =13078.834896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.081 4.081 11 C -0.064 4.064 12 S -0.310 6.310 13 C -0.074 4.074 14 C -0.086 4.086 15 C -0.049 4.049 16 C -0.108 4.108 17 C -0.143 4.143 18 C -0.215 4.215 19 S 0.082 5.918 20 C -0.222 4.222 21 H 0.265 0.735 22 H -0.003 1.003 23 H -0.003 1.003 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.182 0.818 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.238 -28.379 -0.301 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.120 4.120 11 C -0.213 4.213 12 S -0.082 6.082 13 C -0.222 4.222 14 C -0.125 4.125 15 C -0.091 4.091 16 C -0.121 4.121 17 C -0.174 4.174 18 C -0.350 4.350 19 S 0.346 5.654 20 C -0.357 4.357 21 H 0.073 0.927 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.170 0.830 35 H 0.199 0.801 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.975 -29.367 0.559 29.974 hybrid contribution -1.825 2.076 -0.790 2.875 sum 4.150 -27.291 -0.231 27.606 Atomic orbital electron populations 1.70085 1.07701 1.27864 1.51503 1.25980 0.95838 1.03354 0.94639 0.85431 0.78629 0.78349 0.78558 1.19681 1.20552 1.18897 1.21665 0.93540 0.92353 1.50803 0.92354 1.18983 0.94172 0.92401 0.95273 1.21174 0.97999 0.91684 1.01143 1.23316 0.98687 0.94584 1.04670 1.86922 1.20002 1.03028 1.98223 1.23437 0.99726 0.93223 1.05837 1.21202 0.97532 0.90697 1.03053 1.20289 0.95994 0.88600 1.04216 1.19096 1.01771 0.98938 0.92261 1.20369 1.00553 0.96377 1.00059 1.25906 1.06626 1.03241 0.99257 1.84293 1.51933 1.27721 1.01467 1.25737 1.06096 1.00728 1.03151 0.92668 0.98485 0.98504 0.92789 0.92740 0.90212 0.90253 0.89138 0.89218 0.91639 0.91479 0.89596 0.89843 0.83044 0.80075 0.80894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.62 4.97 29.85 0.15 1.77 16 10 C -0.08 -3.47 5.16 30.59 0.16 -3.31 16 11 C -0.06 -2.23 5.94 71.98 0.43 -1.80 16 12 S -0.31 -9.31 21.74 -56.49 -1.23 -10.54 16 13 C -0.07 -1.53 5.94 71.98 0.43 -1.10 16 14 C -0.09 -1.51 5.20 30.60 0.16 -1.35 16 15 C -0.05 -0.68 5.47 29.85 0.16 -0.51 16 16 C -0.11 -1.67 5.06 -20.92 -0.11 -1.78 16 17 C -0.14 -2.10 9.98 21.22 0.21 -1.89 16 18 C -0.22 -2.90 11.23 66.72 0.75 -2.15 16 19 S 0.08 1.17 23.34 -56.49 -1.32 -0.15 16 20 C -0.22 -3.36 10.98 66.72 0.73 -2.63 16 21 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 22 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 23 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 24 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.08 2.65 8.14 -2.39 -0.02 2.64 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.02 8.13 -2.39 -0.02 1.00 16 33 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 34 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -64.66 331.61 4.56 -60.10 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.02 Total: 6.02 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 3.77 Total: -45.63 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.28 Total: -56.45 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -2.55 Total: -10.69 kcal Total: -64.66 4.56 -60.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360935871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.407 kcal (2) G-P(sol) polarization free energy of solvation -64.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds