Wall clock time and date at job start Mon Mar 30 2020 00:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29415 * 125.69738 * 2 1 4 4 N 1.26393 * 116.48066 * 180.02562 * 3 2 1 5 5 C 1.29415 * 116.47209 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.69726 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47241 * 195.02040 * 6 5 4 8 8 C 1.52999 * 109.46833 * 75.02089 * 6 5 4 9 9 N 1.46895 * 109.46830 * 315.02307 * 6 5 4 10 10 C 1.46906 * 110.99789 * 204.99737 * 9 6 5 11 11 C 1.50703 * 109.47109 * 179.97438 * 10 9 6 12 12 O 1.21296 * 119.99996 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99978 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99848 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00405 * 359.97438 * 14 13 11 16 16 C 1.38955 * 119.99710 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00111 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99871 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47000 * 90.00467 * 18 16 14 20 20 H 1.48498 * 109.47335 * 210.00421 * 18 16 14 21 21 H 1.48501 * 109.47470 * 330.00720 * 18 16 14 22 22 S 1.71214 * 108.60978 * 0.22451 * 5 4 3 23 23 H 1.09006 * 109.46740 * 89.98310 * 1 2 3 24 24 H 1.08994 * 109.47049 * 209.97650 * 1 2 3 25 25 H 1.09000 * 109.47401 * 329.98526 * 1 2 3 26 26 H 1.09000 * 109.47160 * 60.00335 * 8 6 5 27 27 H 1.08999 * 109.46796 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47167 * 299.99997 * 8 6 5 29 29 H 1.00899 * 111.00672 * 81.04682 * 9 6 5 30 30 H 1.08992 * 109.47459 * 299.99826 * 10 9 6 31 31 H 1.09004 * 109.47040 * 59.99976 * 10 9 6 32 32 H 0.97002 * 119.99767 * 359.97438 * 13 11 10 33 33 H 0.96996 * 120.00275 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8486 -0.0005 5 6 3.8936 -0.3874 -0.0015 6 6 5.3233 -0.8641 -0.0028 7 1 5.3538 -1.9205 -0.2697 8 6 5.9260 -0.6725 1.3904 9 7 6.0969 -0.0890 -0.9818 10 6 7.2636 -0.8486 -1.4511 11 6 8.0306 -0.0235 -2.4521 12 8 7.6438 1.0880 -2.7455 13 7 9.1464 -0.5208 -3.0215 14 6 9.8445 0.2300 -3.9318 15 1 9.5001 1.2197 -4.1930 16 6 10.9952 -0.2826 -4.5183 17 7 11.4140 -1.4870 -4.2009 18 14 11.9460 0.7400 -5.7591 19 1 12.9677 1.5529 -5.0515 20 1 12.6161 -0.1595 -6.7322 21 1 11.0100 1.6398 -6.4800 22 16 2.5061 -1.3904 -0.0081 23 1 -0.3633 0.0003 -1.0277 24 1 -0.3633 -0.8901 0.5134 25 1 -0.3634 0.8898 0.5141 26 1 5.3519 -1.2476 2.1169 27 1 6.9601 -1.0169 1.3893 28 1 5.8954 0.3839 1.6573 29 1 6.3758 0.8019 -0.5989 30 1 7.9080 -1.0846 -0.6044 31 1 6.9297 -1.7730 -1.9223 32 1 9.4560 -1.4096 -2.7866 33 1 12.2170 -1.8449 -4.6106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381291907.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:59 Heat of formation + Delta-G solvation = 25.026288 kcal Electronic energy + Delta-G solvation = -17665.968633 eV Core-core repulsion = 14660.992219 eV Total energy + Delta-G solvation = -3004.976415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31680 -38.43067 -36.68068 -33.93872 -33.07580 -31.30642 -30.77947 -28.42124 -26.42686 -25.56318 -24.07690 -22.62657 -19.68012 -19.28125 -19.10888 -17.90599 -16.51380 -15.86045 -15.48424 -15.12484 -14.69729 -14.49026 -13.99550 -13.83058 -13.59558 -13.27093 -13.23500 -12.90265 -12.72942 -12.22142 -12.09539 -11.59315 -11.59196 -11.48565 -11.03712 -10.50066 -10.38369 -10.21699 -10.17968 -9.78699 -9.65207 -9.50427 -8.52351 -8.12614 -7.95866 -6.41440 -3.82030 0.37982 0.79736 1.26610 2.57019 3.18730 3.27414 3.33901 3.84647 3.90278 4.08729 4.31102 4.41316 4.69878 4.83641 4.90472 5.08933 5.13832 5.24359 5.25902 5.35686 5.52955 5.53757 5.63786 5.75468 5.91147 5.98832 6.23955 7.06530 7.56072 7.57717 8.06648 8.57323 8.61624 9.18557 9.54164 10.05913 10.76353 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.041312 B = 0.003353 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.600302 B = 8347.693566 C = 8588.962456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.027 4.027 3 N -0.261 5.261 4 N -0.242 5.242 5 C 0.013 3.987 6 C 0.164 3.836 7 H 0.101 0.899 8 C -0.178 4.178 9 N -0.654 5.654 10 C 0.050 3.950 11 C 0.441 3.559 12 O -0.579 6.579 13 N -0.563 5.563 14 C -0.299 4.299 15 H 0.103 0.897 16 C 0.022 3.978 17 N -0.903 5.903 18 Si 0.930 3.070 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.269 1.269 22 S 0.153 5.847 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.362 0.638 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.392 0.608 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.785 -6.047 11.768 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.306 4.306 3 N -0.099 5.099 4 N -0.078 5.078 5 C -0.268 4.268 6 C 0.049 3.951 7 H 0.119 0.881 8 C -0.238 4.238 9 N -0.288 5.288 10 C -0.082 4.082 11 C 0.226 3.774 12 O -0.463 6.463 13 N -0.200 5.200 14 C -0.428 4.428 15 H 0.121 0.879 16 C -0.179 4.179 17 N -0.544 5.544 18 Si 0.757 3.243 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.194 1.194 22 S 0.397 5.603 23 H 0.108 0.892 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.184 0.816 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.225 0.775 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.222 -5.196 10.931 21.050 hybrid contribution 1.334 -0.027 0.189 1.348 sum -15.888 -5.223 11.121 20.084 Atomic orbital electron populations 1.20341 0.84160 1.04410 1.04266 1.29186 1.04136 0.91867 1.05415 1.71474 0.97199 1.26821 1.14372 1.71353 1.05763 1.16976 1.13716 1.29235 1.02382 0.92286 1.02863 1.19967 0.84777 0.97989 0.92376 0.88107 1.22520 1.01734 1.03557 0.96025 1.59937 1.23652 1.06355 1.38865 1.21749 0.91266 0.97394 0.97820 1.19733 0.83358 0.88357 0.85982 1.90556 1.69245 1.20929 1.65525 1.41841 1.22247 1.17729 1.38204 1.19714 1.05198 1.00531 1.17370 0.87905 1.25254 0.97454 0.96357 0.98855 1.69607 1.24749 1.15869 1.44176 0.85856 0.79444 0.79159 0.79843 1.20414 1.20927 1.19378 1.83536 0.98222 1.12324 1.66252 0.89219 0.89900 0.88975 0.91809 0.90785 0.91197 0.81619 0.93322 0.89417 0.77462 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.48 36.00 0.38 -0.10 16 2 C -0.03 -0.30 7.53 -13.30 -0.10 -0.40 16 3 N -0.26 -4.00 11.66 32.58 0.38 -3.62 16 4 N -0.24 -3.99 11.64 32.58 0.38 -3.61 16 5 C 0.01 0.17 6.38 -13.29 -0.08 0.09 16 6 C 0.16 2.08 3.11 -68.86 -0.21 1.86 16 7 H 0.10 1.07 7.80 -51.93 -0.40 0.66 16 8 C -0.18 -1.88 9.14 37.16 0.34 -1.54 16 9 N -0.65 -11.02 5.84 -109.21 -0.64 -11.66 16 10 C 0.05 0.87 5.97 -4.97 -0.03 0.84 16 11 C 0.44 10.47 7.82 -10.98 -0.09 10.38 16 12 O -0.58 -16.15 15.78 5.54 0.09 -16.06 16 13 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 14 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 15 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 16 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 18 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 S 0.15 1.54 23.04 -107.50 -2.48 -0.93 16 23 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 28 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 29 H 0.36 6.58 8.17 -39.29 -0.32 6.26 16 30 H 0.05 0.72 7.43 -51.93 -0.39 0.33 16 31 H 0.09 1.35 8.06 -51.93 -0.42 0.94 16 32 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -34.14 305.75 -5.92 -40.06 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.86 Total: 10.07 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -0.04 Total: 3.10 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.79 Total: -57.03 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.09 Total: -16.06 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.48 Total: -0.93 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.14 -5.92 -40.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381291907.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.087 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds