Wall clock time and date at job start Mon Mar 30 2020 00:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29415 * 125.69738 * 2 1 4 4 N 1.26393 * 116.48066 * 180.02562 * 3 2 1 5 5 C 1.29415 * 116.47209 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.69726 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47241 * 195.02040 * 6 5 4 8 8 C 1.52999 * 109.46833 * 75.02089 * 6 5 4 9 9 N 1.46895 * 109.46830 * 315.02307 * 6 5 4 10 10 C 1.46906 * 110.99789 * 204.99737 * 9 6 5 11 11 C 1.50703 * 109.47109 * 179.97438 * 10 9 6 12 12 O 1.21296 * 119.99996 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99978 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99848 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00405 * 359.97438 * 14 13 11 16 16 C 1.38955 * 119.99710 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00111 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99871 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47000 * 90.00467 * 18 16 14 20 20 H 1.48498 * 109.47335 * 210.00421 * 18 16 14 21 21 H 1.48501 * 109.47470 * 330.00720 * 18 16 14 22 22 S 1.71214 * 108.60978 * 0.22451 * 5 4 3 23 23 H 1.09006 * 109.46740 * 89.98310 * 1 2 3 24 24 H 1.08994 * 109.47049 * 209.97650 * 1 2 3 25 25 H 1.09000 * 109.47401 * 329.98526 * 1 2 3 26 26 H 1.09000 * 109.47160 * 60.00335 * 8 6 5 27 27 H 1.08999 * 109.46796 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47167 * 299.99997 * 8 6 5 29 29 H 1.00899 * 111.00672 * 81.04682 * 9 6 5 30 30 H 1.08992 * 109.47459 * 299.99826 * 10 9 6 31 31 H 1.09004 * 109.47040 * 59.99976 * 10 9 6 32 32 H 0.97002 * 119.99767 * 359.97438 * 13 11 10 33 33 H 0.96996 * 120.00275 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8486 -0.0005 5 6 3.8936 -0.3874 -0.0015 6 6 5.3233 -0.8641 -0.0028 7 1 5.3538 -1.9205 -0.2697 8 6 5.9260 -0.6725 1.3904 9 7 6.0969 -0.0890 -0.9818 10 6 7.2636 -0.8486 -1.4511 11 6 8.0306 -0.0235 -2.4521 12 8 7.6438 1.0880 -2.7455 13 7 9.1464 -0.5208 -3.0215 14 6 9.8445 0.2300 -3.9318 15 1 9.5001 1.2197 -4.1930 16 6 10.9952 -0.2826 -4.5183 17 7 11.4140 -1.4870 -4.2009 18 14 11.9460 0.7400 -5.7591 19 1 12.9677 1.5529 -5.0515 20 1 12.6161 -0.1595 -6.7322 21 1 11.0100 1.6398 -6.4800 22 16 2.5061 -1.3904 -0.0081 23 1 -0.3633 0.0003 -1.0277 24 1 -0.3633 -0.8901 0.5134 25 1 -0.3634 0.8898 0.5141 26 1 5.3519 -1.2476 2.1169 27 1 6.9601 -1.0169 1.3893 28 1 5.8954 0.3839 1.6573 29 1 6.3758 0.8019 -0.5989 30 1 7.9080 -1.0846 -0.6044 31 1 6.9297 -1.7730 -1.9223 32 1 9.4560 -1.4096 -2.7866 33 1 12.2170 -1.8449 -4.6106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381291907.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:59 Heat of formation + Delta-G solvation = -2.710749 kcal Electronic energy + Delta-G solvation = -17667.171402 eV Core-core repulsion = 14660.992219 eV Total energy + Delta-G solvation = -3006.179183 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.29367 -40.21625 -37.93912 -35.95121 -34.00511 -33.27697 -31.93755 -29.28675 -28.02350 -26.49472 -25.75662 -23.61251 -21.23218 -20.42076 -20.17329 -19.88985 -17.98552 -17.09136 -16.82364 -16.42076 -16.21029 -15.97940 -15.48162 -15.14559 -14.73851 -14.32155 -14.17225 -13.90224 -13.59778 -13.50635 -13.47820 -13.16256 -12.92385 -12.76140 -12.48856 -12.42276 -12.12939 -11.51875 -11.42607 -11.10120 -10.66480 -10.55448 -10.38514 -10.01890 -9.42750 -8.47389 -5.95785 -0.49830 -0.04081 0.36413 1.37298 1.41342 1.53862 1.58692 2.04825 2.28856 2.87187 3.03510 3.19931 3.48481 3.62313 3.81206 4.04766 4.16001 4.28695 4.40367 4.45288 4.57590 4.63052 4.72625 4.75843 4.81187 5.07927 5.15317 5.40636 5.81888 6.05358 6.23029 6.60204 7.12616 7.55785 7.63161 8.12305 8.69930 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.041312 B = 0.003353 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.600302 B = 8347.693566 C = 8588.962456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.030 4.030 3 N -0.309 5.309 4 N -0.288 5.288 5 C -0.017 4.017 6 C 0.164 3.836 7 H 0.128 0.872 8 C -0.171 4.171 9 N -0.677 5.677 10 C 0.066 3.934 11 C 0.435 3.565 12 O -0.627 6.627 13 N -0.570 5.570 14 C -0.335 4.335 15 H 0.075 0.925 16 C -0.010 4.010 17 N -0.918 5.918 18 Si 0.991 3.009 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.276 1.276 22 S 0.232 5.768 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.349 0.651 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.398 0.602 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.565 -8.233 12.326 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.309 4.309 3 N -0.147 5.147 4 N -0.124 5.124 5 C -0.297 4.297 6 C 0.050 3.950 7 H 0.146 0.854 8 C -0.231 4.231 9 N -0.309 5.309 10 C -0.066 4.066 11 C 0.223 3.777 12 O -0.513 6.513 13 N -0.208 5.208 14 C -0.465 4.465 15 H 0.093 0.907 16 C -0.210 4.210 17 N -0.559 5.559 18 Si 0.814 3.186 19 H -0.196 1.196 20 H -0.193 1.193 21 H -0.201 1.201 22 S 0.476 5.524 23 H 0.121 0.879 24 H 0.132 0.868 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.169 0.831 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.233 0.767 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.007 -7.430 11.511 22.626 hybrid contribution 1.447 0.589 0.045 1.563 sum -16.560 -6.842 11.556 21.321 Atomic orbital electron populations 1.20615 0.81155 1.06097 1.05541 1.29959 1.06076 0.91979 1.02874 1.71435 0.97354 1.28915 1.17023 1.71306 1.06820 1.19076 1.15221 1.29440 1.04092 0.92831 1.03383 1.20165 0.83902 0.98487 0.92434 0.85439 1.22453 1.02522 1.02814 0.95338 1.59891 1.23617 1.06431 1.40997 1.21621 0.91379 0.96543 0.97007 1.20911 0.82685 0.88211 0.85890 1.90524 1.70295 1.23401 1.67130 1.41885 1.22824 1.17819 1.38259 1.19637 1.06860 1.00358 1.19623 0.90684 1.25990 0.97588 0.97432 1.00005 1.69655 1.25097 1.16546 1.44580 0.84963 0.77978 0.77856 0.77758 1.19594 1.19326 1.20072 1.83130 0.95082 1.09636 1.64512 0.87929 0.86815 0.88699 0.89516 0.89813 0.93078 0.83114 0.90179 0.86869 0.76734 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.48 71.23 0.75 -0.06 16 2 C -0.03 -0.63 7.53 88.46 0.67 0.04 16 3 N -0.31 -9.55 11.66 -50.85 -0.59 -10.14 16 4 N -0.29 -9.65 11.64 -50.84 -0.59 -10.25 16 5 C -0.02 -0.45 6.38 88.47 0.56 0.12 16 6 C 0.16 3.88 3.11 44.17 0.14 4.02 16 7 H 0.13 2.26 7.80 -2.39 -0.02 2.24 16 8 C -0.17 -3.32 9.14 71.98 0.66 -2.66 16 9 N -0.68 -22.51 5.84 -499.45 -2.92 -25.43 16 10 C 0.07 2.20 5.97 85.56 0.51 2.71 16 11 C 0.44 20.98 7.82 87.66 0.69 21.66 16 12 O -0.63 -36.28 15.78 -3.08 -0.05 -36.33 16 13 N -0.57 -29.28 5.29 -306.98 -1.62 -30.90 16 14 C -0.34 -19.29 9.68 84.04 0.81 -18.47 16 15 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 16 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 17 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 18 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 S 0.23 4.08 23.04 -56.49 -1.30 2.78 16 23 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.44 7.45 -2.39 -0.02 1.43 16 28 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.35 13.06 8.17 -89.69 -0.73 12.32 16 30 H 0.08 2.17 7.43 -2.39 -0.02 2.15 16 31 H 0.11 3.19 8.06 -2.38 -0.02 3.17 16 32 H 0.40 19.05 7.90 -92.71 -0.73 18.31 16 33 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -77.15 305.75 0.18 -76.97 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -0.31 Total: 29.61 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.25 Total: 7.28 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -5.44 Total: -125.71 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.05 Total: -36.33 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.30 Total: 2.78 kcal Total: -77.15 0.18 -76.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381291907.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.262 kcal (2) G-P(sol) polarization free energy of solvation -77.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds