Wall clock time and date at job start Mon Mar 30 2020 00:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29418 * 125.69726 * 2 1 4 4 N 1.26399 * 116.47661 * 179.67947 * 3 2 1 5 5 C 1.29420 * 116.47374 * 0.52530 * 4 3 2 6 6 C 1.50699 * 125.69575 * 179.77215 * 5 4 3 7 7 H 1.09000 * 109.47247 * 164.69545 * 6 5 4 8 8 C 1.53006 * 109.46866 * 284.69377 * 6 5 4 9 9 N 1.46899 * 109.47244 * 44.69344 * 6 5 4 10 10 C 1.46897 * 111.00133 * 155.00305 * 9 6 5 11 11 C 1.50705 * 109.47250 * 180.02562 * 10 9 6 12 12 O 1.21290 * 119.99690 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99724 * 179.97438 * 11 10 9 14 14 C 1.37103 * 119.99731 * 179.97438 * 13 11 10 15 15 H 1.08006 * 119.99986 * 359.97438 * 14 13 11 16 16 C 1.38948 * 120.00219 * 180.02562 * 14 13 11 17 17 N 1.31409 * 120.00193 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99890 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47299 * 89.99896 * 18 16 14 20 20 H 1.48501 * 109.47281 * 210.00105 * 18 16 14 21 21 H 1.48498 * 109.47177 * 330.00138 * 18 16 14 22 22 S 1.71217 * 125.69786 * 179.97438 * 2 1 3 23 23 H 1.09007 * 109.47306 * 270.04560 * 1 2 3 24 24 H 1.08996 * 109.47236 * 30.04806 * 1 2 3 25 25 H 1.09003 * 109.47280 * 150.05003 * 1 2 3 26 26 H 1.09001 * 109.47002 * 179.97438 * 8 6 5 27 27 H 1.08993 * 109.46955 * 300.00219 * 8 6 5 28 28 H 1.09000 * 109.47050 * 60.00048 * 8 6 5 29 29 H 1.00901 * 110.99931 * 31.04632 * 9 6 5 30 30 H 1.09003 * 109.46826 * 299.99875 * 10 9 6 31 31 H 1.08993 * 109.47326 * 59.99934 * 10 9 6 32 32 H 0.96996 * 120.00663 * 359.97438 * 13 11 10 33 33 H 0.97001 * 119.99979 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8485 0.0063 5 6 3.8936 -0.3875 0.0015 6 6 5.3232 -0.8642 0.0025 7 1 5.3538 -1.9206 0.2689 8 6 5.9258 -0.6719 -1.3907 9 7 6.0971 -0.0896 0.9818 10 6 7.2637 -0.8493 1.4505 11 6 8.0309 -0.0247 2.4519 12 8 7.6440 1.0866 2.7458 13 7 9.1467 -0.5223 3.0209 14 6 9.8449 0.2280 3.9315 15 1 9.5009 1.2180 4.1926 16 6 10.9956 -0.2847 4.5177 17 7 11.6651 0.4347 5.3901 18 14 11.5909 -1.9966 4.0656 19 1 12.5181 -1.9089 2.9089 20 1 12.3003 -2.5961 5.2243 21 1 10.4276 -2.8458 3.7041 22 16 2.5060 -1.3905 0.0006 23 1 -0.3634 0.0008 1.0277 24 1 -0.3633 0.8895 -0.5146 25 1 -0.3634 -0.8904 -0.5131 26 1 6.9600 -1.0163 -1.3899 27 1 5.3517 -1.2466 -2.1174 28 1 5.8953 0.3846 -1.6572 29 1 5.5169 0.1966 1.7562 30 1 6.9298 -1.7739 1.9214 31 1 7.9080 -1.0849 0.6036 32 1 9.4558 -1.4112 2.7861 33 1 12.4682 0.0766 5.7996 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381291913.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:01 Heat of formation + Delta-G solvation = 4.028550 kcal Electronic energy + Delta-G solvation = -17721.142788 eV Core-core repulsion = 14715.255842 eV Total energy + Delta-G solvation = -3005.886945 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.38733 -40.35435 -37.89808 -35.99810 -34.05374 -33.73497 -32.05575 -29.35032 -28.30513 -26.52527 -25.61649 -23.35055 -21.34650 -20.58722 -20.27738 -20.13718 -18.02402 -17.21824 -16.94938 -16.63815 -16.29883 -15.84062 -15.36368 -15.01652 -14.86097 -14.49855 -14.23885 -14.06097 -13.89446 -13.52622 -13.41820 -13.17758 -12.91801 -12.81313 -12.41658 -12.32724 -11.96699 -11.51519 -11.43988 -11.18348 -10.75048 -10.62273 -10.45212 -10.25527 -9.43985 -8.41169 -6.02957 -0.59140 -0.11930 0.28610 1.30848 1.37583 1.46330 1.51190 1.95077 2.24307 2.67608 2.88326 3.14884 3.29800 3.53823 3.82204 4.08563 4.11998 4.23329 4.39075 4.40938 4.52920 4.60887 4.72854 4.79351 4.91116 5.06158 5.32670 5.52305 5.85392 5.98732 6.15265 6.59459 6.87818 7.39006 7.56681 7.96797 8.76819 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.039343 B = 0.003549 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.521166 B = 7888.076326 C = 8110.898611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.025 4.025 3 N -0.310 5.310 4 N -0.278 5.278 5 C -0.043 4.043 6 C 0.169 3.831 7 H 0.102 0.898 8 C -0.133 4.133 9 N -0.675 5.675 10 C 0.061 3.939 11 C 0.447 3.553 12 O -0.617 6.617 13 N -0.588 5.588 14 C -0.331 4.331 15 H 0.051 0.949 16 C -0.017 4.017 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.256 1.256 20 H -0.276 1.276 21 H -0.226 1.226 22 S 0.242 5.758 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.114 0.886 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.342 0.658 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.392 0.608 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.126 -16.052 -15.338 29.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.304 4.304 3 N -0.148 5.148 4 N -0.115 5.115 5 C -0.323 4.323 6 C 0.056 3.944 7 H 0.119 0.881 8 C -0.193 4.193 9 N -0.309 5.309 10 C -0.071 4.071 11 C 0.235 3.765 12 O -0.502 6.502 13 N -0.230 5.230 14 C -0.460 4.460 15 H 0.069 0.931 16 C -0.215 4.215 17 N -0.577 5.577 18 Si 0.788 3.212 19 H -0.181 1.181 20 H -0.201 1.201 21 H -0.149 1.149 22 S 0.487 5.513 23 H 0.123 0.877 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.161 0.839 30 H 0.105 0.895 31 H 0.143 0.857 32 H 0.228 0.772 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.839 -14.573 -15.476 29.076 hybrid contribution 0.475 -0.359 1.016 1.178 sum -19.364 -14.932 -14.460 28.407 Atomic orbital electron populations 1.20647 0.81080 1.06182 1.05691 1.30039 1.06190 0.92022 1.02107 1.71514 0.97252 1.28890 1.17175 1.71422 1.06783 1.19009 1.14307 1.29517 1.04288 0.93061 1.05388 1.20274 0.82129 0.96340 0.95685 0.88060 1.21835 1.02126 1.02347 0.92952 1.60117 1.09958 1.41720 1.19074 1.21782 0.93260 0.94306 0.97771 1.20981 0.82612 0.88095 0.84857 1.90576 1.70074 1.23384 1.66158 1.41972 1.24320 1.17173 1.39501 1.19000 1.07334 1.00272 1.19440 0.93110 1.26188 0.95509 1.04327 0.95502 1.69817 1.18427 1.40313 1.29147 0.85314 0.80138 0.76625 0.79095 1.18063 1.20102 1.14943 1.83167 0.94765 1.09260 1.64146 0.87697 0.88712 0.86718 0.89839 0.89887 0.93743 0.83932 0.89453 0.85681 0.77224 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.48 71.23 0.75 0.05 16 2 C -0.03 -0.48 7.53 88.46 0.67 0.19 16 3 N -0.31 -9.07 11.66 -50.85 -0.59 -9.66 16 4 N -0.28 -8.95 11.64 -50.85 -0.59 -9.54 16 5 C -0.04 -1.02 6.03 88.46 0.53 -0.49 16 6 C 0.17 3.69 3.13 44.17 0.14 3.83 16 7 H 0.10 1.48 7.80 -2.39 -0.02 1.46 16 8 C -0.13 -2.62 9.40 71.98 0.68 -1.94 16 9 N -0.67 -21.27 5.91 -499.46 -2.95 -24.23 16 10 C 0.06 1.80 5.97 85.56 0.51 2.31 16 11 C 0.45 20.48 7.82 87.66 0.69 21.17 16 12 O -0.62 -35.87 15.78 -3.06 -0.05 -35.92 16 13 N -0.59 -27.73 5.09 -306.98 -1.56 -29.29 16 14 C -0.33 -19.70 10.16 84.04 0.85 -18.84 16 15 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 16 C -0.02 -0.94 5.50 84.93 0.47 -0.48 16 17 N -0.94 -57.14 13.96 21.66 0.30 -56.84 16 18 Si 0.97 38.35 27.74 68.60 1.90 40.25 16 19 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 20 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 22 S 0.24 3.63 23.04 -56.49 -1.30 2.33 16 23 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.08 1.42 7.45 -2.39 -0.02 1.40 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.34 12.41 8.05 -89.69 -0.72 11.69 16 30 H 0.09 1.94 8.06 -2.39 -0.02 1.92 16 31 H 0.13 2.94 7.43 -2.39 -0.02 2.92 16 32 H 0.39 14.88 5.76 -92.71 -0.53 14.34 16 33 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -86.80 302.52 0.28 -86.52 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.16 Total: 30.58 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.28 Total: 5.80 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -5.40 Total: -129.56 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.05 Total: -35.92 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 1.90 Total: 40.25 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.30 Total: 2.33 kcal Total: -86.80 0.28 -86.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381291913.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.551 kcal (2) G-P(sol) polarization free energy of solvation -86.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds