Wall clock time and date at job start Mon Mar 30 2020 01:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47750 * 2 1 4 4 C 1.53007 * 109.47056 * 239.99813 * 2 1 3 5 5 C 1.53003 * 109.47151 * 175.00300 * 4 2 1 6 6 O 1.42894 * 109.46987 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47186 * 120.00258 * 2 1 3 8 8 C 1.38405 * 120.00044 * 275.00047 * 7 2 1 9 9 N 1.32746 * 119.43753 * 359.97438 * 8 7 2 10 10 C 1.31471 * 121.74113 * 179.97438 * 9 8 7 11 11 C 1.40791 * 120.38936 * 359.97438 * 10 9 8 12 12 C 1.41197 * 120.56556 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99423 * 335.70496 * 12 11 10 14 14 C 1.39862 * 120.00267 * 155.70494 * 12 11 10 15 15 N 1.30907 * 119.99551 * 343.21271 * 14 12 11 16 16 Si 1.86794 * 120.00041 * 163.20966 * 14 12 11 17 17 H 1.48500 * 109.47339 * 90.00409 * 16 14 12 18 18 H 1.48503 * 109.47051 * 210.00137 * 16 14 12 19 19 H 1.48500 * 109.47123 * 329.99811 * 16 14 12 20 20 C 1.41288 * 118.87045 * 0.02562 * 11 10 9 21 21 C 1.36669 * 118.40009 * 359.74507 * 20 11 10 22 22 Cl 1.73591 * 120.26314 * 180.25996 * 21 20 11 23 23 H 1.08997 * 109.47750 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47011 * 300.00251 * 1 2 3 25 25 H 1.09006 * 109.47047 * 59.99299 * 1 2 3 26 26 H 1.09001 * 109.46469 * 55.00670 * 4 2 1 27 27 H 1.08993 * 109.47324 * 295.00595 * 4 2 1 28 28 H 1.08994 * 109.47058 * 59.99896 * 5 4 2 29 29 H 1.08998 * 109.46567 * 300.00368 * 5 4 2 30 30 H 0.96700 * 113.99772 * 179.97438 * 6 5 4 31 31 H 0.97002 * 120.00061 * 94.98946 * 7 2 1 32 32 H 1.08001 * 119.80409 * 179.97438 * 10 9 8 33 33 H 0.97003 * 119.99487 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.79754 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 8 4.0410 -1.2866 -2.4807 7 7 2.0183 -0.6907 1.1961 8 6 2.1505 -0.0003 2.3884 9 7 1.8320 1.2876 2.4353 10 6 1.9396 1.9867 3.5435 11 6 2.4014 1.3794 4.7268 12 6 2.5179 2.1266 5.9191 13 1 2.6408 3.1987 5.8747 14 6 2.4742 1.4785 7.1577 15 7 2.0055 0.2591 7.2421 16 14 3.0845 2.3527 8.6915 17 1 1.9610 3.0937 9.3191 18 1 3.6164 1.3532 9.6524 19 1 4.1614 3.3062 8.3222 20 6 2.7464 0.0095 4.7007 21 6 2.6116 -0.6725 3.5241 22 17 3.0150 -2.3588 3.4391 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 1.6053 -0.2617 -2.1370 27 1 1.7515 -1.7715 -1.2057 28 1 3.9994 -1.0729 -0.4260 29 1 3.8531 0.4368 -1.3573 30 1 5.0018 -1.2583 -2.5865 31 1 2.2489 -1.6319 1.1526 32 1 1.6721 3.0331 3.5462 33 1 1.9755 -0.1906 8.1011 34 1 3.1036 -0.4877 5.5904 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390249424.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:56 Heat of formation + Delta-G solvation = -58.397909 kcal Electronic energy + Delta-G solvation = -18290.428718 eV Core-core repulsion = 15247.498301 eV Total energy + Delta-G solvation = -3042.930417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61441 -38.59010 -37.28406 -37.07275 -35.66702 -33.10214 -32.34818 -30.43965 -29.68444 -26.71793 -24.42976 -23.78494 -22.93813 -21.39434 -19.28373 -18.63080 -18.16728 -17.43760 -16.86049 -16.07094 -15.92472 -15.51581 -15.38678 -14.90966 -14.84990 -14.20443 -13.86050 -13.56039 -13.47833 -13.14004 -12.90201 -12.81751 -12.68454 -12.55313 -12.41516 -12.06706 -11.99213 -11.80914 -11.54847 -11.23465 -10.89820 -10.51259 -10.10470 -9.95497 -8.70685 -8.42553 -6.17804 0.67399 1.01153 1.43298 1.43700 1.52549 1.58442 2.23844 2.63047 2.76240 3.26051 3.66104 4.03079 4.09654 4.20462 4.29387 4.52202 4.55951 4.63499 4.70508 4.77444 4.90796 4.99416 5.06084 5.11998 5.22341 5.28452 5.36418 5.45684 5.82049 5.82815 6.35298 6.62255 6.77443 6.85740 6.86242 6.91098 7.74222 8.35500 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.004879 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.049034 B = 5737.762805 C = 6121.786064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.167 3.833 3 H 0.069 0.931 4 C -0.117 4.117 5 C 0.079 3.921 6 O -0.590 6.590 7 N -0.727 5.727 8 C 0.299 3.701 9 N -0.505 5.505 10 C 0.010 3.990 11 C 0.009 3.991 12 C -0.483 4.483 13 H 0.086 0.914 14 C 0.035 3.965 15 N -0.833 5.833 16 Si 0.981 3.019 17 H -0.264 1.264 18 H -0.271 1.271 19 H -0.257 1.257 20 C -0.103 4.103 21 C -0.117 4.117 22 Cl -0.088 7.088 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.396 0.604 31 H 0.401 0.599 32 H 0.147 0.853 33 H 0.287 0.713 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 -2.121 -9.768 10.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.062 3.938 3 H 0.088 0.912 4 C -0.154 4.154 5 C 0.002 3.998 6 O -0.398 6.398 7 N -0.367 5.367 8 C 0.064 3.936 9 N -0.222 5.222 10 C -0.148 4.148 11 C 0.004 3.996 12 C -0.514 4.514 13 H 0.104 0.896 14 C -0.179 4.179 15 N -0.459 5.459 16 Si 0.802 3.198 17 H -0.189 1.189 18 H -0.196 1.196 19 H -0.181 1.181 20 C -0.131 4.131 21 C -0.150 4.150 22 Cl -0.060 7.060 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.245 0.755 31 H 0.237 0.763 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.177 -2.015 -10.560 10.815 hybrid contribution 1.103 -0.574 1.912 2.280 sum 2.280 -2.589 -8.649 9.311 Atomic orbital electron populations 1.22108 0.95734 1.01676 1.01693 1.20596 0.93705 0.96433 0.83065 0.91238 1.21726 0.94307 1.01847 0.97569 1.22094 0.95065 0.95731 0.86951 1.86382 1.29006 1.78899 1.45520 1.44039 1.75089 1.11580 1.05987 1.17687 1.00879 0.88771 0.86264 1.66844 1.20530 1.05082 1.29710 1.22599 1.04259 0.99531 0.88426 1.18578 0.93762 0.92308 0.94983 1.19580 1.45722 0.95751 0.90333 0.89628 1.26691 0.92053 0.95440 1.03761 1.69859 1.33448 1.14039 1.28600 0.85208 0.79465 0.78754 0.76362 1.18850 1.19615 1.18104 1.21239 1.00830 0.95477 0.95509 1.21020 1.12708 0.85169 0.96100 1.98236 1.93001 1.16369 1.98412 0.92625 0.94602 0.90290 0.88835 0.90909 0.94191 0.93508 0.75487 0.76256 0.83573 0.90198 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.50 71.98 0.68 -3.54 16 2 C 0.17 4.84 2.57 44.99 0.12 4.95 16 3 H 0.07 2.24 7.51 -2.39 -0.02 2.23 16 4 C -0.12 -2.71 5.12 30.60 0.16 -2.56 16 5 C 0.08 1.86 6.93 71.98 0.50 2.35 16 6 O -0.59 -12.75 13.66 -148.98 -2.03 -14.78 16 7 N -0.73 -24.95 4.61 -324.22 -1.49 -26.44 16 8 C 0.30 12.83 7.46 133.32 0.99 13.83 16 9 N -0.51 -22.78 9.14 -191.08 -1.75 -24.53 16 10 C 0.01 0.48 10.97 85.37 0.94 1.42 16 11 C 0.01 0.48 5.59 -21.18 -0.12 0.36 16 12 C -0.48 -24.58 9.07 23.39 0.21 -24.36 16 13 H 0.09 4.12 7.90 -2.91 -0.02 4.09 16 14 C 0.03 1.67 5.18 85.22 0.44 2.12 16 15 N -0.83 -42.30 10.91 21.82 0.24 -42.06 16 16 Si 0.98 36.86 29.59 68.60 2.03 38.89 16 17 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 18 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 19 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 20 C -0.10 -5.24 8.52 22.65 0.19 -5.05 16 21 C -0.12 -5.31 6.32 22.28 0.14 -5.17 16 22 Cl -0.09 -3.35 27.56 -2.72 -0.07 -3.43 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.03 1.19 8.14 -2.38 -0.02 1.18 16 25 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.02 7.75 -2.39 -0.02 1.00 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.40 5.06 9.12 -74.06 -0.68 4.39 16 31 H 0.40 12.86 7.21 -92.71 -0.67 12.19 16 32 H 0.15 6.37 8.06 -2.91 -0.02 6.35 16 33 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 34 H 0.12 6.54 6.20 -2.91 -0.02 6.53 16 Total: -1.00 -57.47 304.93 0.96 -56.51 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.21 Total: 31.49 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 4.26 Total: -15.65 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -3.00 Total: -93.03 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -2.03 Total: -14.78 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Atomic # 17 Polarization: -3.35 SS G_CDS: -0.07 Total: -3.43 kcal Total: -57.47 0.96 -56.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390249424.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.889 kcal (2) G-P(sol) polarization free energy of solvation -57.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds