Wall clock time and date at job start Mon Mar 30 2020 01:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 C 1.52997 * 109.47125 * 120.00327 * 2 1 3 5 5 C 1.53002 * 109.47092 * 185.00166 * 4 2 1 6 6 O 1.42903 * 109.46981 * 180.02562 * 5 4 2 7 7 N 1.46505 * 109.46989 * 240.00228 * 2 1 3 8 8 C 1.38403 * 119.99824 * 85.00094 * 7 2 1 9 9 N 1.32741 * 119.44220 * 359.97438 * 8 7 2 10 10 C 1.31473 * 121.74282 * 179.97438 * 9 8 7 11 11 C 1.40789 * 120.38725 * 0.02562 * 10 9 8 12 12 C 1.41197 * 120.56296 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99707 * 23.66436 * 12 11 10 14 14 C 1.39864 * 120.00170 * 203.65226 * 12 11 10 15 15 N 1.30908 * 119.99584 * 17.64940 * 14 12 11 16 16 Si 1.86793 * 119.99976 * 197.64082 * 14 12 11 17 17 H 1.48507 * 109.46963 * 94.69976 * 16 14 12 18 18 H 1.48508 * 109.47275 * 214.69344 * 16 14 12 19 19 H 1.48491 * 109.47478 * 334.69688 * 16 14 12 20 20 C 1.41284 * 118.87120 * 359.97438 * 11 10 9 21 21 C 1.36665 * 118.39793 * 359.74176 * 20 11 10 22 22 Cl 1.73604 * 120.26143 * 180.26549 * 21 20 11 23 23 H 1.09002 * 109.47267 * 299.99854 * 1 2 3 24 24 H 1.09002 * 109.47515 * 59.99645 * 1 2 3 25 25 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46784 * 304.99852 * 4 2 1 27 27 H 1.08999 * 109.47367 * 64.99902 * 4 2 1 28 28 H 1.08998 * 109.46593 * 299.99471 * 5 4 2 29 29 H 1.08999 * 109.47230 * 59.99652 * 5 4 2 30 30 H 0.96699 * 113.99935 * 179.97438 * 6 5 4 31 31 H 0.96999 * 119.99562 * 265.00172 * 7 2 1 32 32 H 1.07998 * 119.80431 * 179.97438 * 10 9 8 33 33 H 0.97000 * 119.99059 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.79778 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 8 4.0412 -1.2875 2.4801 7 7 2.0183 -0.6906 -1.1962 8 6 2.1505 -0.0001 -2.3884 9 7 1.8311 1.2875 -2.4355 10 6 1.9396 1.9870 -3.5434 11 6 2.4034 1.3802 -4.7262 12 6 2.5219 2.1280 -5.9180 13 1 2.6345 3.2012 -5.8731 14 6 2.4938 1.4790 -7.1566 15 7 2.0217 0.2613 -7.2468 16 14 3.1295 2.3498 -8.6820 17 1 4.5485 1.9760 -8.9100 18 1 2.3164 1.9463 -9.8574 19 1 3.0290 3.8190 -8.4914 20 6 2.7494 0.0106 -4.7000 21 6 2.6236 -0.6691 -3.5210 22 17 3.0416 -2.3517 -3.4323 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6053 -0.2618 2.1369 27 1 1.7516 -1.7716 1.2055 28 1 3.9994 -1.0728 0.4259 29 1 3.8532 0.4370 1.3573 30 1 5.0020 -1.2599 2.5855 31 1 2.2489 -1.6318 -1.1527 32 1 1.6706 3.0329 -3.5464 33 1 2.0019 -0.1886 -8.1059 34 1 3.1081 -0.4862 -5.5892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390249425.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:59 Heat of formation + Delta-G solvation = -41.750620 kcal Electronic energy + Delta-G solvation = -18290.043548 eV Core-core repulsion = 15247.835011 eV Total energy + Delta-G solvation = -3042.208536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.91326 -37.39876 -35.84672 -35.57633 -33.96887 -31.59497 -30.54051 -28.95771 -28.34784 -24.96566 -23.10367 -22.25108 -21.23420 -20.04692 -17.49214 -17.37085 -16.81302 -15.85740 -15.29805 -14.72201 -14.35565 -14.29306 -13.87864 -13.35917 -13.28483 -12.79282 -12.33944 -12.08126 -11.78980 -11.77288 -11.47248 -11.40116 -11.18959 -11.05327 -10.91063 -10.75445 -10.59592 -10.34308 -9.92918 -9.85488 -9.53933 -8.85913 -8.30869 -8.15299 -6.95906 -6.71295 -4.33164 2.48766 2.78047 3.04261 3.07508 3.15380 3.18331 3.87335 4.12428 4.19927 4.54068 5.12576 5.19032 5.36772 5.50774 5.63250 5.74263 5.83473 5.88370 5.97638 6.11147 6.16292 6.29407 6.52132 6.60587 6.66993 6.92324 7.05687 7.14532 7.59266 7.62663 7.66902 8.09463 8.34026 8.40620 8.65823 8.70396 9.50990 10.10187 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027871 B = 0.004882 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.390936 B = 5733.900615 C = 6117.450286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.168 3.832 3 H 0.083 0.917 4 C -0.125 4.125 5 C 0.076 3.924 6 O -0.580 6.580 7 N -0.737 5.737 8 C 0.291 3.709 9 N -0.501 5.501 10 C 0.014 3.986 11 C 0.038 3.962 12 C -0.453 4.453 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.797 5.797 16 Si 0.911 3.089 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.261 1.261 20 C -0.089 4.089 21 C -0.104 4.104 22 Cl -0.116 7.116 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.377 0.623 31 H 0.395 0.605 32 H 0.134 0.866 33 H 0.282 0.718 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 -1.937 8.716 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.062 3.938 3 H 0.101 0.899 4 C -0.163 4.163 5 C -0.001 4.001 6 O -0.386 6.386 7 N -0.377 5.377 8 C 0.058 3.942 9 N -0.216 5.216 10 C -0.144 4.144 11 C 0.032 3.968 12 C -0.483 4.483 13 H 0.101 0.899 14 C -0.144 4.144 15 N -0.423 5.423 16 Si 0.735 3.265 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.185 1.185 20 C -0.116 4.116 21 C -0.136 4.136 22 Cl -0.088 7.088 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.223 0.777 31 H 0.231 0.769 32 H 0.151 0.849 33 H 0.093 0.907 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.001 -1.810 9.460 9.684 hybrid contribution 1.190 -0.534 -1.759 2.190 sum 2.191 -2.344 7.701 8.343 Atomic orbital electron populations 1.22176 0.96486 1.01252 1.01854 1.20461 0.93190 0.97008 0.83134 0.89886 1.21828 0.94053 1.01900 0.98561 1.22210 0.95239 0.95663 0.87035 1.86434 1.26964 1.78998 1.46180 1.43925 1.75972 1.11403 1.06435 1.17411 1.02531 0.88926 0.85342 1.66759 1.20196 1.04605 1.30090 1.22352 1.04754 0.98804 0.88532 1.18302 0.92667 0.91697 0.94124 1.19349 1.44134 0.95313 0.89535 0.89917 1.25899 0.92588 0.94872 1.01061 1.69806 1.32292 1.12717 1.27514 0.86251 0.79559 0.80681 0.79994 1.19366 1.20295 1.18501 1.21301 0.99922 0.95180 0.95186 1.20942 1.12527 0.83767 0.96381 1.98242 1.92890 1.19192 1.98455 0.92924 0.91653 0.93368 0.90506 0.91319 0.93080 0.93656 0.77713 0.76916 0.84877 0.90677 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.50 37.16 0.35 -1.98 16 2 C 0.17 2.58 2.57 -67.93 -0.17 2.41 16 3 H 0.08 1.40 7.51 -51.93 -0.39 1.01 16 4 C -0.13 -1.62 5.12 -26.73 -0.14 -1.76 16 5 C 0.08 0.97 6.93 37.16 0.26 1.23 16 6 O -0.58 -7.03 13.66 -35.23 -0.48 -7.51 16 7 N -0.74 -13.11 4.61 -53.83 -0.25 -13.36 16 8 C 0.29 6.30 7.46 -155.06 -1.16 5.15 16 9 N -0.50 -11.30 9.14 -11.75 -0.11 -11.41 16 10 C 0.01 0.34 10.97 -16.74 -0.18 0.15 16 11 C 0.04 0.95 5.59 -106.65 -0.60 0.35 16 12 C -0.45 -11.27 9.06 -37.85 -0.34 -11.61 16 13 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 14 C 0.07 1.75 5.17 -17.34 -0.09 1.66 16 15 N -0.80 -19.84 10.92 55.54 0.61 -19.23 16 16 Si 0.91 17.94 29.59 -169.99 -5.03 12.91 16 17 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 18 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 20 C -0.09 -2.20 8.53 -38.99 -0.33 -2.54 16 21 C -0.10 -2.35 6.32 -39.57 -0.25 -2.60 16 22 Cl -0.12 -2.24 27.56 -51.86 -1.43 -3.67 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.69 7.75 -51.93 -0.40 0.29 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.38 2.88 9.12 45.56 0.42 3.29 16 31 H 0.40 6.67 7.21 -40.82 -0.29 6.38 16 32 H 0.13 2.87 8.06 -52.49 -0.42 2.45 16 33 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 34 H 0.14 3.58 6.19 -52.49 -0.32 3.25 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -26.87 304.93 -8.25 -35.13 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -3.50 Total: 12.08 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -2.65 Total: -9.54 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.25 Total: -44.00 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.48 Total: -7.51 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -1.43 Total: -3.67 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.87 -8.25 -35.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390249425.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.625 kcal (2) G-P(sol) polarization free energy of solvation -26.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds