Wall clock time and date at job start Mon Mar 30 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 C 1.52997 * 109.47125 * 120.00327 * 2 1 3 5 5 C 1.53002 * 109.47092 * 185.00166 * 4 2 1 6 6 O 1.42903 * 109.46981 * 180.02562 * 5 4 2 7 7 N 1.46505 * 109.46989 * 240.00228 * 2 1 3 8 8 C 1.38403 * 119.99824 * 85.00094 * 7 2 1 9 9 N 1.32741 * 119.44220 * 359.97438 * 8 7 2 10 10 C 1.31473 * 121.74282 * 179.97438 * 9 8 7 11 11 C 1.40789 * 120.38725 * 0.02562 * 10 9 8 12 12 C 1.41197 * 120.56296 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99707 * 23.66436 * 12 11 10 14 14 C 1.39864 * 120.00170 * 203.65226 * 12 11 10 15 15 N 1.30908 * 119.99584 * 17.64940 * 14 12 11 16 16 Si 1.86793 * 119.99976 * 197.64082 * 14 12 11 17 17 H 1.48507 * 109.46963 * 94.69976 * 16 14 12 18 18 H 1.48508 * 109.47275 * 214.69344 * 16 14 12 19 19 H 1.48491 * 109.47478 * 334.69688 * 16 14 12 20 20 C 1.41284 * 118.87120 * 359.97438 * 11 10 9 21 21 C 1.36665 * 118.39793 * 359.74176 * 20 11 10 22 22 Cl 1.73604 * 120.26143 * 180.26549 * 21 20 11 23 23 H 1.09002 * 109.47267 * 299.99854 * 1 2 3 24 24 H 1.09002 * 109.47515 * 59.99645 * 1 2 3 25 25 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46784 * 304.99852 * 4 2 1 27 27 H 1.08999 * 109.47367 * 64.99902 * 4 2 1 28 28 H 1.08998 * 109.46593 * 299.99471 * 5 4 2 29 29 H 1.08999 * 109.47230 * 59.99652 * 5 4 2 30 30 H 0.96699 * 113.99935 * 179.97438 * 6 5 4 31 31 H 0.96999 * 119.99562 * 265.00172 * 7 2 1 32 32 H 1.07998 * 119.80431 * 179.97438 * 10 9 8 33 33 H 0.97000 * 119.99059 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.79778 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 8 4.0412 -1.2875 2.4801 7 7 2.0183 -0.6906 -1.1962 8 6 2.1505 -0.0001 -2.3884 9 7 1.8311 1.2875 -2.4355 10 6 1.9396 1.9870 -3.5434 11 6 2.4034 1.3802 -4.7262 12 6 2.5219 2.1280 -5.9180 13 1 2.6345 3.2012 -5.8731 14 6 2.4938 1.4790 -7.1566 15 7 2.0217 0.2613 -7.2468 16 14 3.1295 2.3498 -8.6820 17 1 4.5485 1.9760 -8.9100 18 1 2.3164 1.9463 -9.8574 19 1 3.0290 3.8190 -8.4914 20 6 2.7494 0.0106 -4.7000 21 6 2.6236 -0.6691 -3.5210 22 17 3.0416 -2.3517 -3.4323 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6053 -0.2618 2.1369 27 1 1.7516 -1.7716 1.2055 28 1 3.9994 -1.0728 0.4259 29 1 3.8532 0.4370 1.3573 30 1 5.0020 -1.2599 2.5855 31 1 2.2489 -1.6318 -1.1527 32 1 1.6706 3.0329 -3.5464 33 1 2.0019 -0.1886 -8.1059 34 1 3.1081 -0.4862 -5.5892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390249425.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:58 Heat of formation + Delta-G solvation = -58.470396 kcal Electronic energy + Delta-G solvation = -18290.768572 eV Core-core repulsion = 15247.835011 eV Total energy + Delta-G solvation = -3042.933560 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61505 -38.58995 -37.28465 -37.07267 -35.67176 -33.10369 -32.34950 -30.44251 -29.68442 -26.72019 -24.42992 -23.78537 -22.93920 -21.39513 -19.28640 -18.63087 -18.16758 -17.44096 -16.86184 -16.07121 -15.92575 -15.51398 -15.38479 -14.91243 -14.85246 -14.20670 -13.86295 -13.56418 -13.47506 -13.12678 -12.93460 -12.81784 -12.68620 -12.55638 -12.42511 -12.03910 -11.99077 -11.79694 -11.54225 -11.24844 -10.89875 -10.51821 -10.10722 -9.95368 -8.71754 -8.43061 -6.17743 0.67193 1.00799 1.43222 1.43603 1.54964 1.55970 2.23602 2.63153 2.75462 3.26029 3.65976 4.03101 4.09650 4.20479 4.29398 4.52213 4.55972 4.63502 4.70510 4.77347 4.90839 4.99393 5.06000 5.11857 5.22294 5.28335 5.36441 5.45719 5.81746 5.82723 6.35279 6.62237 6.77311 6.85682 6.86185 6.90878 7.74315 8.34796 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027871 B = 0.004882 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.390936 B = 5733.900615 C = 6117.450286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.167 3.833 3 H 0.069 0.931 4 C -0.117 4.117 5 C 0.079 3.921 6 O -0.590 6.590 7 N -0.727 5.727 8 C 0.299 3.701 9 N -0.505 5.505 10 C 0.010 3.990 11 C 0.009 3.991 12 C -0.483 4.483 13 H 0.086 0.914 14 C 0.035 3.965 15 N -0.831 5.831 16 Si 0.981 3.019 17 H -0.266 1.266 18 H -0.272 1.272 19 H -0.255 1.255 20 C -0.104 4.104 21 C -0.117 4.117 22 Cl -0.088 7.088 23 H 0.078 0.922 24 H 0.035 0.965 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.396 0.604 31 H 0.401 0.599 32 H 0.147 0.853 33 H 0.288 0.712 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.212 -2.117 9.775 10.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.062 3.938 3 H 0.088 0.912 4 C -0.154 4.154 5 C 0.002 3.998 6 O -0.398 6.398 7 N -0.367 5.367 8 C 0.063 3.937 9 N -0.221 5.221 10 C -0.149 4.149 11 C 0.004 3.996 12 C -0.513 4.513 13 H 0.104 0.896 14 C -0.179 4.179 15 N -0.458 5.458 16 Si 0.803 3.197 17 H -0.191 1.191 18 H -0.197 1.197 19 H -0.179 1.179 20 C -0.132 4.132 21 C -0.150 4.150 22 Cl -0.060 7.060 23 H 0.097 0.903 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.245 0.755 31 H 0.237 0.763 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.188 -2.006 10.567 10.821 hybrid contribution 1.133 -0.584 -1.906 2.294 sum 2.321 -2.590 8.660 9.332 Atomic orbital electron populations 1.22108 0.95730 1.01676 1.01695 1.20595 0.93711 0.96425 0.83064 0.91250 1.21725 0.94303 1.01850 0.97571 1.22096 0.95067 0.95719 0.86957 1.86383 1.28994 1.78847 1.45584 1.44037 1.75111 1.11580 1.05976 1.17679 1.00838 0.88807 0.86328 1.66840 1.20599 1.05035 1.29659 1.22589 1.04320 0.99533 0.88424 1.18580 0.93758 0.92282 0.95007 1.19597 1.45733 0.95658 0.90343 0.89621 1.26694 0.92113 0.95447 1.03689 1.69865 1.33277 1.14140 1.28530 0.85186 0.78792 0.79634 0.76115 1.19054 1.19737 1.17888 1.21234 1.00942 0.95508 0.95467 1.21022 1.12501 0.85319 0.96121 1.98237 1.92646 1.16751 1.98393 0.90287 0.94600 0.92626 0.88833 0.90907 0.94202 0.93500 0.75489 0.76259 0.83590 0.90178 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.50 71.98 0.68 -3.54 16 2 C 0.17 4.84 2.57 44.99 0.12 4.96 16 3 H 0.07 2.24 7.51 -2.39 -0.02 2.22 16 4 C -0.12 -2.71 5.12 30.59 0.16 -2.56 16 5 C 0.08 1.86 6.93 71.98 0.50 2.36 16 6 O -0.59 -12.76 13.66 -148.98 -2.04 -14.79 16 7 N -0.73 -24.96 4.61 -324.23 -1.49 -26.45 16 8 C 0.30 12.81 7.46 133.33 0.99 13.81 16 9 N -0.51 -22.77 9.14 -191.09 -1.75 -24.52 16 10 C 0.01 0.46 10.97 85.37 0.94 1.39 16 11 C 0.01 0.48 5.59 -21.18 -0.12 0.36 16 12 C -0.48 -24.54 9.06 23.39 0.21 -24.33 16 13 H 0.09 4.13 7.90 -2.91 -0.02 4.11 16 14 C 0.03 1.68 5.17 85.22 0.44 2.12 16 15 N -0.83 -42.20 10.92 21.82 0.24 -41.97 16 16 Si 0.98 36.88 29.59 68.60 2.03 38.91 16 17 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 18 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 19 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 20 C -0.10 -5.29 8.53 22.65 0.19 -5.09 16 21 C -0.12 -5.30 6.32 22.28 0.14 -5.16 16 22 Cl -0.09 -3.35 27.56 -2.72 -0.07 -3.43 16 23 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.01 7.75 -2.39 -0.02 1.00 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.40 5.07 9.12 -74.06 -0.68 4.40 16 31 H 0.40 12.86 7.21 -92.71 -0.67 12.20 16 32 H 0.15 6.37 8.06 -2.91 -0.02 6.34 16 33 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 34 H 0.12 6.54 6.19 -2.91 -0.02 6.52 16 Total: -1.00 -57.42 304.93 0.96 -56.46 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.21 Total: 31.47 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.25 Total: -15.67 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -3.00 Total: -92.93 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -2.04 Total: -14.79 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Atomic # 17 Polarization: -3.35 SS G_CDS: -0.07 Total: -3.43 kcal Total: -57.42 0.96 -56.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390249425.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.014 kcal (2) G-P(sol) polarization free energy of solvation -57.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds