Wall clock time and date at job start Mon Mar 30 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48498 * 109.47511 * 274.66317 * 3 2 1 5 5 H 1.48507 * 109.47161 * 34.66424 * 3 2 1 6 6 H 1.48504 * 109.47405 * 154.66321 * 3 2 1 7 7 C 1.39946 * 120.00673 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00760 * 162.23380 * 7 2 1 9 9 C 1.41403 * 119.99272 * 342.23418 * 7 2 1 10 10 C 1.40714 * 120.24016 * 155.29055 * 9 7 2 11 11 C 1.37622 * 119.74159 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25066 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.75066 * 179.97438 * 12 11 10 14 14 S 1.81393 * 109.47522 * 89.99721 * 13 12 11 15 15 C 1.76198 * 103.00010 * 180.02562 * 14 13 12 16 16 C 1.38973 * 120.07953 * 359.72485 * 15 14 13 17 17 C 1.38083 * 119.91682 * 180.29836 * 16 15 14 18 18 C 1.38303 * 120.08375 * 359.97438 * 17 16 15 19 19 C 1.38299 * 120.15957 * 359.97438 * 18 17 16 20 20 C 1.38085 * 120.08091 * 0.02562 * 19 18 17 21 21 C 1.38638 * 120.49854 * 0.24816 * 12 11 10 22 22 C 1.37612 * 120.24758 * 359.45409 * 21 12 11 23 23 H 0.96996 * 120.00077 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.13096 * 359.97438 * 10 9 7 25 25 H 1.08005 * 119.87390 * 179.97438 * 11 10 9 26 26 H 1.09012 * 109.46726 * 329.99510 * 13 12 11 27 27 H 1.09002 * 109.46928 * 209.99848 * 13 12 11 28 28 H 1.07992 * 120.04468 * 0.27206 * 16 15 14 29 29 H 1.08006 * 119.95751 * 179.97438 * 17 16 15 30 30 H 1.07997 * 119.92166 * 179.97438 * 18 17 16 31 31 H 1.07996 * 119.96142 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.04174 * 179.97438 * 20 19 18 33 33 H 1.07994 * 119.87085 * 179.70306 * 21 12 11 34 34 H 1.08004 * 120.12862 * 180.27369 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1034 -1.3954 5 1 1.4924 2.6223 0.7963 6 1 3.5856 1.4138 0.5992 7 6 2.0081 -1.2119 -0.0005 8 1 3.0494 -1.2341 -0.2859 9 6 1.3516 -2.4074 0.3726 10 6 1.8220 -3.6492 -0.0931 11 6 1.1749 -4.8063 0.2761 12 6 0.0635 -4.7517 1.1030 13 6 -0.6368 -6.0257 1.4997 14 16 0.0960 -6.6673 3.0300 15 6 -0.8348 -8.1327 3.3312 16 6 -1.8518 -8.5034 2.4596 17 6 -2.5833 -9.6491 2.7022 18 6 -2.3045 -10.4279 3.8107 19 6 -1.2925 -10.0627 4.6796 20 6 -0.5568 -8.9182 4.4435 21 6 -0.4120 -3.5334 1.5631 22 6 0.2229 -2.3641 1.2117 23 1 -0.4850 0.8400 -0.0004 24 1 2.6869 -3.6940 -0.7383 25 1 1.5338 -5.7606 -0.0804 26 1 -0.5248 -6.7643 0.7057 27 1 -1.6956 -5.8233 1.6609 28 1 -2.0701 -7.8958 1.5938 29 1 -3.3741 -9.9376 2.0255 30 1 -2.8785 -11.3233 3.9981 31 1 -1.0773 -10.6733 5.5440 32 1 0.2330 -8.6334 5.1227 33 1 -1.2814 -3.5023 2.2029 34 1 -0.1465 -1.4164 1.5749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399136997.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:08 Heat of formation + Delta-G solvation = 18.617581 kcal Electronic energy + Delta-G solvation = -16452.845821 eV Core-core repulsion = 13826.148016 eV Total energy + Delta-G solvation = -2626.697805 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.77096 -39.52775 -35.89812 -33.19600 -31.94282 -31.81594 -31.23659 -29.32163 -25.88769 -23.63923 -23.41383 -22.94741 -21.85371 -19.26895 -18.72753 -17.25165 -17.14690 -16.23981 -15.89112 -15.75814 -15.68533 -15.56817 -14.68340 -14.37378 -14.24811 -14.18096 -13.86462 -13.60853 -13.43404 -12.93392 -12.75224 -12.60865 -12.32680 -12.14191 -11.96560 -11.57752 -11.33973 -11.14929 -10.96146 -10.65040 -9.91699 -9.42270 -9.24108 -8.69031 -8.35804 -6.37358 0.30348 0.32150 0.43982 1.08318 1.14150 1.38006 1.46904 1.53199 1.71682 2.19020 2.71997 2.80383 3.70697 3.95527 4.03244 4.04459 4.05941 4.26495 4.46987 4.53127 4.53802 4.57822 4.63661 4.82642 5.00467 5.09423 5.11389 5.29859 5.38098 5.39124 5.48013 5.58084 5.64918 5.88304 6.02776 6.05432 6.13152 6.32127 6.64141 6.88609 6.97006 8.27727 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.054393 B = 0.003274 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.650733 B = 8549.738903 C = 8586.272171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.494 4.494 8 H 0.078 0.922 9 C 0.086 3.914 10 C -0.243 4.243 11 C -0.069 4.069 12 C -0.206 4.206 13 C -0.013 4.013 14 S -0.167 6.167 15 C -0.097 4.097 16 C -0.153 4.153 17 C -0.105 4.105 18 C -0.131 4.131 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.084 4.084 22 C -0.190 4.190 23 H 0.290 0.710 24 H 0.101 0.899 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.124 0.876 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 -14.325 5.643 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.523 4.523 8 H 0.096 0.904 9 C 0.083 3.917 10 C -0.263 4.263 11 C -0.089 4.089 12 C -0.210 4.210 13 C -0.159 4.159 14 S 0.081 5.919 15 C -0.210 4.210 16 C -0.177 4.177 17 C -0.124 4.124 18 C -0.152 4.152 19 C -0.122 4.122 20 C -0.146 4.146 21 C -0.103 4.103 22 C -0.210 4.210 23 H 0.101 0.899 24 H 0.119 0.881 25 H 0.135 0.865 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.142 0.858 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.170 0.830 32 H 0.144 0.856 33 H 0.123 0.877 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.008 -13.637 6.238 15.523 hybrid contribution -0.624 0.551 -0.890 1.219 sum -4.632 -13.087 5.348 14.877 Atomic orbital electron populations 1.69864 1.09060 1.30806 1.34710 1.26799 0.95512 1.04637 0.91086 0.85185 0.79193 0.75829 0.79492 1.18542 1.18954 1.18278 1.19911 0.98451 0.92482 1.41491 0.90384 1.18019 0.91660 0.93163 0.88832 1.21164 1.04549 0.93016 1.07561 1.20681 0.94464 0.97132 0.96603 1.18678 1.01723 0.92156 1.08415 1.22153 1.00841 0.97524 0.95403 1.86100 1.48069 1.23519 1.34207 1.22095 1.00184 0.99005 0.99677 1.21411 0.96876 0.99499 0.99878 1.21406 0.99145 0.93688 0.98183 1.21554 0.98238 1.00793 0.94566 1.21430 0.95056 0.95582 1.00150 1.21007 1.01343 0.95822 0.96456 1.20745 0.98569 0.92426 0.98606 1.21252 1.00293 0.96997 1.02466 0.89911 0.88123 0.86536 0.88903 0.89394 0.85833 0.83508 0.82887 0.82964 0.85583 0.87689 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.50 10.97 21.83 0.24 -42.26 16 2 C 0.04 1.78 5.14 85.26 0.44 2.22 16 3 Si 0.98 37.82 29.59 68.60 2.03 39.85 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.49 -26.63 9.05 23.46 0.21 -26.42 16 8 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 9 C 0.09 4.69 5.57 -21.29 -0.12 4.57 16 10 C -0.24 -11.99 9.80 22.73 0.22 -11.77 16 11 C -0.07 -3.02 9.67 22.22 0.21 -2.80 16 12 C -0.21 -8.75 5.16 -19.68 -0.10 -8.85 16 13 C -0.01 -0.42 4.45 71.23 0.32 -0.11 16 14 S -0.17 -5.66 21.91 -56.49 -1.24 -6.90 16 15 C -0.10 -2.77 6.11 22.62 0.14 -2.63 16 16 C -0.15 -3.85 9.36 22.41 0.21 -3.64 16 17 C -0.10 -2.05 10.04 22.25 0.22 -1.83 16 18 C -0.13 -2.23 10.04 22.30 0.22 -2.01 16 19 C -0.10 -1.92 10.04 22.25 0.22 -1.70 16 20 C -0.12 -3.02 9.79 22.41 0.22 -2.80 16 21 C -0.08 -3.89 9.67 22.22 0.21 -3.68 16 22 C -0.19 -10.09 8.70 22.73 0.20 -9.89 16 23 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 24 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 25 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 26 H 0.09 2.84 7.69 -2.38 -0.02 2.83 16 27 H 0.09 2.79 7.68 -2.39 -0.02 2.77 16 28 H 0.12 3.02 5.88 -2.91 -0.02 3.01 16 29 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 34 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 Total: -1.00 -59.74 306.42 4.96 -54.78 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 1.09 Total: 25.87 kcal Atomic # 6 Polarization: -74.17 SS G_CDS: 2.84 Total: -71.34 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.24 Total: -42.26 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -1.24 Total: -6.90 kcal Total: -59.74 4.96 -54.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399136997.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.400 kcal (2) G-P(sol) polarization free energy of solvation -59.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds