Wall clock time and date at job start Mon Mar 30 2020 00:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99956 * 2 1 4 4 H 1.48494 * 109.47321 * 270.00107 * 3 2 1 5 5 H 1.48504 * 109.46912 * 30.00428 * 3 2 1 6 6 H 1.48501 * 109.46904 * 149.99855 * 3 2 1 7 7 C 1.37876 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00365 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.81400 * 102.99840 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46775 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46999 * 179.97438 * 12 11 10 14 14 O 1.42895 * 109.47006 * 179.97438 * 13 12 11 15 15 C 1.35951 * 116.99758 * 179.97438 * 14 13 12 16 16 C 1.38708 * 120.03040 * 0.28885 * 15 14 13 17 17 C 1.38147 * 119.96935 * 180.25012 * 16 15 14 18 18 C 1.38455 * 120.02958 * 359.46222 * 17 16 15 19 19 F 1.35101 * 119.97206 * 180.29906 * 18 17 16 20 20 C 1.38452 * 120.06193 * 0.28172 * 18 17 16 21 21 C 1.38156 * 120.03063 * 359.97438 * 20 18 17 22 22 H 0.96998 * 120.00515 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46462 * 60.00189 * 9 7 2 24 24 H 1.08999 * 109.46731 * 300.00470 * 9 7 2 25 25 H 1.08997 * 109.46883 * 59.99980 * 11 10 9 26 26 H 1.08995 * 109.47260 * 299.99967 * 11 10 9 27 27 H 1.08997 * 109.47586 * 60.00222 * 12 11 10 28 28 H 1.09003 * 109.47359 * 299.99361 * 12 11 10 29 29 H 1.09005 * 109.46539 * 60.00054 * 13 12 11 30 30 H 1.08995 * 109.46786 * 300.00191 * 13 12 11 31 31 H 1.07998 * 120.01328 * 0.02562 * 16 15 14 32 32 H 1.08002 * 119.98838 * 179.74746 * 17 16 15 33 33 H 1.07997 * 119.98751 * 179.97438 * 20 18 17 34 34 H 1.07999 * 120.02057 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 16 2.4299 -3.8780 -0.0005 11 6 1.3516 -5.3367 -0.0013 12 6 2.2085 -6.6042 -0.0008 13 6 1.2991 -7.8347 -0.0008 14 8 2.0994 -9.0185 -0.0009 15 6 1.4415 -10.2082 -0.0003 16 6 0.0547 -10.2346 -0.0058 17 6 -0.6126 -11.4442 -0.0001 18 6 0.1023 -12.6299 -0.0001 19 9 -0.5514 -13.8122 -0.0006 20 6 1.4866 -12.6051 0.0000 21 6 2.1565 -11.3968 -0.0004 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 0.7228 -5.3232 -0.8915 26 1 0.7222 -5.3237 0.8884 27 1 2.8371 -6.6175 0.8896 28 1 2.8383 -6.6175 -0.8904 29 1 0.6702 -7.8215 -0.8910 30 1 0.6696 -7.8212 0.8890 31 1 -0.5032 -9.3098 -0.0109 32 1 -1.6924 -11.4650 -0.0002 33 1 2.0431 -13.5307 0.0005 34 1 3.2363 -11.3776 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413014365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:56 Heat of formation + Delta-G solvation = -79.473014 kcal Electronic energy + Delta-G solvation = -16658.243963 eV Core-core repulsion = 13596.523406 eV Total energy + Delta-G solvation = -3061.720557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.09140 -40.36619 -37.63923 -33.92688 -33.17761 -31.57346 -29.67516 -28.57906 -26.70912 -23.71858 -23.10376 -22.43093 -21.32266 -18.61451 -17.65604 -16.89687 -16.52483 -16.50166 -15.78427 -15.42084 -15.00493 -14.80044 -14.46607 -14.25747 -13.96656 -13.37734 -13.20284 -12.78205 -12.64650 -12.51851 -12.17353 -12.01509 -11.64580 -11.40116 -11.05685 -10.90509 -10.68344 -10.67199 -9.97186 -9.58623 -9.54419 -8.92039 -8.64558 -8.39807 -6.75449 -6.22681 -4.26946 0.80607 0.89713 2.41473 3.03407 3.24106 3.24457 3.30159 3.35612 3.81430 3.99842 4.32909 4.33804 4.43133 4.75286 4.77037 4.85041 5.00178 5.07989 5.14634 5.17239 5.32824 5.41533 5.53959 5.74985 5.78326 5.80179 5.91547 6.03216 6.18861 6.38558 7.04846 7.06313 7.09385 7.72083 7.97525 8.75019 9.36376 10.88693 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.067375 B = 0.002355 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.483930 B =11886.280149 C =12270.712052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.092 3.908 10 S -0.303 6.303 11 C -0.089 4.089 12 C -0.098 4.098 13 C 0.062 3.938 14 O -0.309 6.309 15 C 0.128 3.872 16 C -0.183 4.183 17 C -0.111 4.111 18 C 0.052 3.948 19 F -0.143 7.143 20 C -0.113 4.113 21 C -0.126 4.126 22 H 0.266 0.734 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -22.950 -0.004 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.086 0.914 9 C -0.055 4.055 10 S -0.076 6.076 11 C -0.238 4.238 12 C -0.136 4.136 13 C -0.015 4.015 14 O -0.222 6.222 15 C 0.082 3.918 16 C -0.201 4.201 17 C -0.130 4.130 18 C 0.033 3.967 19 F -0.122 7.122 20 C -0.132 4.132 21 C -0.145 4.145 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.823 -22.780 0.001 22.794 hybrid contribution -1.459 0.742 -0.009 1.637 sum -0.636 -22.037 -0.008 22.046 Atomic orbital electron populations 1.69949 1.06159 1.27386 1.49685 1.24973 0.94990 0.99333 0.94626 0.86336 0.79745 0.82124 0.78374 1.20318 1.20967 1.19516 1.20686 0.93506 0.88725 1.52283 0.91422 1.21053 0.93594 0.90789 1.00064 1.86670 1.21017 1.01883 1.98059 1.23049 1.00554 0.95841 1.04330 1.21222 0.97902 0.89636 1.04865 1.22972 0.94212 0.82575 1.01723 1.86102 1.36078 1.12090 1.87974 1.19080 0.90681 0.86312 0.95742 1.21207 0.93277 0.98979 1.06664 1.20957 1.00827 0.90728 1.00490 1.17579 0.90482 0.81090 1.07546 1.91487 1.81395 1.44929 1.94407 1.20955 0.92351 0.98888 1.00999 1.20320 1.00849 0.88872 1.04463 0.92476 0.94610 0.94609 0.90672 0.90677 0.89983 0.89979 0.91613 0.91600 0.84246 0.84469 0.84116 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.51 -14.36 9.13 -34.44 -0.31 -14.68 16 8 H 0.07 1.90 7.71 -52.48 -0.40 1.49 16 9 C 0.09 2.35 5.70 36.01 0.21 2.56 16 10 S -0.30 -6.42 21.66 -107.50 -2.33 -8.75 16 11 C -0.09 -1.38 5.94 37.16 0.22 -1.16 16 12 C -0.10 -1.25 5.59 -26.73 -0.15 -1.40 16 13 C 0.06 0.65 4.74 37.16 0.18 0.82 16 14 O -0.31 -3.54 10.14 -19.58 -0.20 -3.74 16 15 C 0.13 1.32 6.69 -39.23 -0.26 1.06 16 16 C -0.18 -1.68 9.04 -39.44 -0.36 -2.04 16 17 C -0.11 -0.98 10.02 -39.53 -0.40 -1.38 16 18 C 0.05 0.50 7.30 -39.42 -0.29 0.21 16 19 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 20 C -0.11 -0.95 10.02 -39.53 -0.40 -1.35 16 21 C -0.13 -1.14 9.99 -39.44 -0.39 -1.53 16 22 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 24 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.62 7.65 -51.93 -0.40 0.22 16 30 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 31 H 0.14 1.09 6.30 -52.49 -0.33 0.76 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -29.69 313.47 -8.57 -38.26 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -4.47 Total: -3.04 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -2.05 Total: -17.19 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.74 Total: -25.04 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.20 Total: -3.74 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -6.42 SS G_CDS: -2.33 Total: -8.75 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.69 -8.57 -38.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.210 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds