Wall clock time and date at job start Mon Mar 30 2020 00:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99956 * 2 1 4 4 H 1.48494 * 109.47321 * 270.00107 * 3 2 1 5 5 H 1.48504 * 109.46912 * 30.00428 * 3 2 1 6 6 H 1.48501 * 109.46904 * 149.99855 * 3 2 1 7 7 C 1.37876 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00365 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.81400 * 102.99840 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46775 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46999 * 179.97438 * 12 11 10 14 14 O 1.42895 * 109.47006 * 179.97438 * 13 12 11 15 15 C 1.35951 * 116.99758 * 179.97438 * 14 13 12 16 16 C 1.38708 * 120.03040 * 0.28885 * 15 14 13 17 17 C 1.38147 * 119.96935 * 180.25012 * 16 15 14 18 18 C 1.38455 * 120.02958 * 359.46222 * 17 16 15 19 19 F 1.35101 * 119.97206 * 180.29906 * 18 17 16 20 20 C 1.38452 * 120.06193 * 0.28172 * 18 17 16 21 21 C 1.38156 * 120.03063 * 359.97438 * 20 18 17 22 22 H 0.96998 * 120.00515 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46462 * 60.00189 * 9 7 2 24 24 H 1.08999 * 109.46731 * 300.00470 * 9 7 2 25 25 H 1.08997 * 109.46883 * 59.99980 * 11 10 9 26 26 H 1.08995 * 109.47260 * 299.99967 * 11 10 9 27 27 H 1.08997 * 109.47586 * 60.00222 * 12 11 10 28 28 H 1.09003 * 109.47359 * 299.99361 * 12 11 10 29 29 H 1.09005 * 109.46539 * 60.00054 * 13 12 11 30 30 H 1.08995 * 109.46786 * 300.00191 * 13 12 11 31 31 H 1.07998 * 120.01328 * 0.02562 * 16 15 14 32 32 H 1.08002 * 119.98838 * 179.74746 * 17 16 15 33 33 H 1.07997 * 119.98751 * 179.97438 * 20 18 17 34 34 H 1.07999 * 120.02057 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 16 2.4299 -3.8780 -0.0005 11 6 1.3516 -5.3367 -0.0013 12 6 2.2085 -6.6042 -0.0008 13 6 1.2991 -7.8347 -0.0008 14 8 2.0994 -9.0185 -0.0009 15 6 1.4415 -10.2082 -0.0003 16 6 0.0547 -10.2346 -0.0058 17 6 -0.6126 -11.4442 -0.0001 18 6 0.1023 -12.6299 -0.0001 19 9 -0.5514 -13.8122 -0.0006 20 6 1.4866 -12.6051 0.0000 21 6 2.1565 -11.3968 -0.0004 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 0.7228 -5.3232 -0.8915 26 1 0.7222 -5.3237 0.8884 27 1 2.8371 -6.6175 0.8896 28 1 2.8383 -6.6175 -0.8904 29 1 0.6702 -7.8215 -0.8910 30 1 0.6696 -7.8212 0.8890 31 1 -0.5032 -9.3098 -0.0109 32 1 -1.6924 -11.4650 -0.0002 33 1 2.0431 -13.5307 0.0005 34 1 3.2363 -11.3776 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413014365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:56 Heat of formation + Delta-G solvation = -94.412958 kcal Electronic energy + Delta-G solvation = -16658.891808 eV Core-core repulsion = 13596.523406 eV Total energy + Delta-G solvation = -3062.368402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.82904 -41.11037 -38.38958 -35.30179 -34.97946 -32.23860 -30.69153 -30.40937 -27.71367 -25.30681 -24.26656 -23.24582 -22.30945 -19.36762 -18.63824 -18.36952 -17.65808 -17.39429 -17.10229 -16.53702 -16.39940 -15.69169 -15.57874 -15.41937 -14.66362 -14.53915 -14.40858 -14.34727 -14.09769 -13.59528 -13.42236 -13.41645 -12.76046 -12.72865 -12.46986 -12.36803 -11.91194 -11.73399 -11.57273 -11.48204 -10.75241 -10.70823 -10.19704 -9.13161 -8.49321 -8.34310 -6.47251 0.15173 0.18462 0.93130 1.40547 1.41397 1.53902 2.01961 2.15896 2.36670 2.55619 3.00534 3.31802 3.67408 3.80045 3.81999 3.99262 3.99809 4.13776 4.26943 4.31375 4.39470 4.56235 4.63974 4.90373 4.93435 4.93790 4.96931 5.09970 5.11618 5.13635 5.23533 5.56482 5.69669 5.88231 6.33801 6.60182 7.20939 8.77675 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.067375 B = 0.002355 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.483930 B =11886.280149 C =12270.712052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.014 3.986 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.094 3.906 10 S -0.320 6.320 11 C -0.074 4.074 12 C -0.089 4.089 13 C 0.067 3.933 14 O -0.323 6.323 15 C 0.110 3.890 16 C -0.186 4.186 17 C -0.114 4.114 18 C 0.037 3.963 19 F -0.150 7.150 20 C -0.110 4.110 21 C -0.131 4.131 22 H 0.271 0.729 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -23.673 -0.018 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.053 4.053 10 S -0.093 6.093 11 C -0.223 4.223 12 C -0.128 4.128 13 C -0.010 4.010 14 O -0.237 6.237 15 C 0.064 3.936 16 C -0.204 4.204 17 C -0.133 4.133 18 C 0.018 3.982 19 F -0.129 7.129 20 C -0.129 4.129 21 C -0.150 4.150 22 H 0.079 0.921 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.180 0.820 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.084 -23.514 -0.014 23.539 hybrid contribution -1.560 0.813 -0.005 1.759 sum -0.476 -22.701 -0.019 22.706 Atomic orbital electron populations 1.70046 1.07638 1.28595 1.50108 1.25911 0.95904 1.03057 0.93809 0.85275 0.78475 0.77520 0.78787 1.19396 1.20028 1.19007 1.21016 0.93460 0.90320 1.52842 0.92033 1.20730 0.93963 0.92590 0.98054 1.86516 1.21591 1.03093 1.98089 1.23116 0.99939 0.93765 1.05435 1.21069 0.97776 0.89402 1.04533 1.22860 0.93499 0.81447 1.03166 1.86049 1.36662 1.12553 1.88444 1.19312 0.91326 0.86137 0.96793 1.21372 0.93014 0.99679 1.06376 1.21175 1.01784 0.90426 0.99924 1.17835 0.91092 0.81110 1.08151 1.91471 1.81570 1.45300 1.94526 1.21186 0.92144 0.99593 0.99978 1.20536 1.01609 0.88693 1.04145 0.92052 0.96556 0.96562 0.89595 0.89604 0.90368 0.90359 0.90200 0.90195 0.82927 0.82878 0.82040 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.93 13.29 21.45 0.28 -53.64 16 2 C 0.01 0.78 5.46 84.65 0.46 1.24 16 3 Si 0.98 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -30.62 9.13 25.60 0.23 -30.38 16 8 H 0.06 3.50 7.71 -2.91 -0.02 3.47 16 9 C 0.09 4.93 5.70 71.24 0.41 5.34 16 10 S -0.32 -13.55 21.66 -56.49 -1.22 -14.78 16 11 C -0.07 -2.20 5.94 71.98 0.43 -1.77 16 12 C -0.09 -2.13 5.59 30.60 0.17 -1.96 16 13 C 0.07 1.25 4.74 71.98 0.34 1.59 16 14 O -0.32 -6.83 10.14 -92.99 -0.94 -7.77 16 15 C 0.11 2.08 6.69 22.50 0.15 2.23 16 16 C -0.19 -3.07 9.04 22.36 0.20 -2.86 16 17 C -0.11 -1.83 10.02 22.30 0.22 -1.60 16 18 C 0.04 0.65 7.30 22.37 0.16 0.81 16 19 F -0.15 -2.86 17.27 44.97 0.78 -2.08 16 20 C -0.11 -1.66 10.02 22.30 0.22 -1.44 16 21 C -0.13 -2.15 9.99 22.36 0.22 -1.93 16 22 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 23 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.28 7.65 -2.38 -0.02 1.26 16 30 H 0.08 1.29 7.67 -2.39 -0.02 1.27 16 31 H 0.15 2.01 6.30 -2.91 -0.02 1.99 16 32 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -63.76 313.47 5.23 -58.53 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.09 Total: 5.06 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 3.23 Total: -30.72 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.28 Total: -53.64 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.94 Total: -7.77 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -13.55 SS G_CDS: -1.22 Total: -14.78 kcal Total: -63.76 5.23 -58.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.886 kcal (2) G-P(sol) polarization free energy of solvation -63.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds