Wall clock time and date at job start Mon Mar 30 2020 01:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50703 * 109.46663 * 239.99914 * 2 1 3 5 5 H 1.08007 * 119.99831 * 240.00085 * 4 2 1 6 6 C 1.37875 * 120.00014 * 60.00407 * 4 2 1 7 7 N 1.31512 * 119.99968 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99888 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46806 * 89.99952 * 8 6 4 10 10 H 1.48499 * 109.47115 * 210.00115 * 8 6 4 11 11 H 1.48503 * 109.46961 * 330.00118 * 8 6 4 12 12 C 1.53001 * 109.47010 * 120.00499 * 2 1 3 13 13 N 1.46503 * 109.46453 * 299.99655 * 12 2 1 14 14 C 1.31801 * 120.00071 * 114.57757 * 13 12 2 15 15 N 1.38137 * 120.86096 * 353.95120 * 14 13 12 16 16 H 0.96996 * 120.15319 * 0.04273 * 15 14 13 17 17 C 1.35679 * 119.70246 * 180.02562 * 15 14 13 18 18 N 1.30253 * 121.64065 * 359.70826 * 17 15 14 19 19 C 1.34378 * 121.87239 * 0.58640 * 18 17 15 20 20 N 1.38389 * 119.96272 * 179.69746 * 19 18 17 21 21 C 1.37860 * 120.07707 * 359.42401 * 19 18 17 22 22 Cl 1.73595 * 120.78467 * 180.25049 * 21 19 18 23 23 H 1.08996 * 109.46981 * 299.99874 * 1 2 3 24 24 H 1.09003 * 109.47119 * 59.99929 * 1 2 3 25 25 H 1.08997 * 109.47661 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46889 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47257 * 299.99763 * 3 2 1 28 28 H 1.08996 * 109.47016 * 60.00147 * 3 2 1 29 29 H 0.96999 * 119.99503 * 179.97438 * 7 6 4 30 30 H 1.08989 * 109.47193 * 180.02562 * 12 2 1 31 31 H 1.08994 * 109.47160 * 59.99119 * 12 2 1 32 32 H 1.07998 * 119.18108 * 180.02562 * 17 15 14 33 33 H 0.97008 * 120.00192 * 179.72446 * 20 19 18 34 34 H 0.97000 * 120.00322 * 359.45529 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3445 -2.1616 -4.4123 10 1 2.4872 -0.1403 -5.1121 11 1 3.6306 -1.7568 -3.7120 12 6 2.0400 -0.7214 1.2492 13 7 1.5516 -0.0307 2.4453 14 6 0.7081 -0.6357 3.2575 15 7 0.1769 -1.8697 2.9363 16 1 0.4225 -2.3045 2.1047 17 6 -0.6899 -2.4712 3.7895 18 7 -1.0351 -1.9166 4.9163 19 6 -0.5623 -0.7157 5.2903 20 7 -0.9605 -0.1603 6.4937 21 6 0.3234 -0.0387 4.4792 22 17 0.9507 1.5108 4.9473 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.7088 1.1613 -3.4844 30 1 3.1299 -0.7210 1.2495 31 1 1.6765 -1.7489 1.2492 32 1 -1.0998 -3.4361 3.5302 33 1 -0.6165 0.7048 6.7661 34 1 -1.5867 -0.6342 7.0630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413408961.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:30 Heat of formation + Delta-G solvation = 56.455681 kcal Electronic energy + Delta-G solvation = -18755.837579 eV Core-core repulsion = 15750.180339 eV Total energy + Delta-G solvation = -3005.657240 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69581 -37.02525 -36.19392 -35.39538 -33.80640 -31.76751 -31.05120 -28.99160 -25.55804 -25.35619 -24.85866 -24.09994 -21.63507 -18.84561 -18.60352 -17.96758 -17.04550 -15.91007 -15.36394 -15.25409 -15.13843 -14.64613 -13.89644 -13.41602 -13.24394 -12.62312 -12.34021 -12.11088 -11.79393 -11.22117 -11.14388 -10.81976 -10.72324 -10.62935 -10.32765 -10.19228 -10.11119 -9.91901 -9.42182 -9.34685 -8.90383 -8.62077 -8.41793 -8.27100 -6.79882 -5.91186 -4.03602 0.99569 2.30247 2.59886 3.20894 3.29106 3.35414 3.37002 3.39587 3.85247 4.31323 4.43534 4.90042 5.33041 5.35463 5.59277 5.83872 6.06627 6.45620 6.57617 6.71669 6.86351 6.94347 7.16117 7.19532 7.33438 7.37376 7.46786 7.54521 7.75333 7.80347 8.06327 8.17738 8.32905 8.51244 8.69436 8.98820 9.61691 11.08403 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032170 B = 0.005096 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.158370 B = 5492.741875 C = 5999.480891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.074 3.926 3 C -0.119 4.119 4 C -0.510 4.510 5 H 0.052 0.948 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.889 3.111 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.066 3.934 13 N -0.544 5.544 14 C 0.388 3.612 15 N -0.656 5.656 16 H 0.424 0.576 17 C 0.416 3.584 18 N -0.584 5.584 19 C 0.429 3.571 20 N -0.838 5.838 21 C -0.225 4.225 22 Cl -0.048 7.048 23 H 0.010 0.990 24 H 0.082 0.918 25 H 0.011 0.989 26 H 0.018 0.982 27 H 0.074 0.926 28 H 0.021 0.979 29 H 0.258 0.742 30 H 0.068 0.932 31 H 0.012 0.988 32 H 0.204 0.796 33 H 0.411 0.589 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.995 -5.563 15.385 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 C -0.177 4.177 4 C -0.549 4.549 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.063 4.063 13 N -0.267 5.267 14 C 0.118 3.882 15 N -0.287 5.287 16 H 0.265 0.735 17 C 0.126 3.874 18 N -0.314 5.314 19 C 0.206 3.794 20 N -0.379 5.379 21 C -0.269 4.269 22 Cl -0.020 7.020 23 H 0.029 0.971 24 H 0.100 0.900 25 H 0.031 0.969 26 H 0.037 0.963 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.030 0.970 32 H 0.221 0.779 33 H 0.243 0.757 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.947 -4.666 15.704 17.113 hybrid contribution 0.572 -0.826 -1.661 1.941 sum -4.375 -5.492 14.043 15.701 Atomic orbital electron populations 1.21765 0.98383 0.97677 1.00471 1.18120 0.92094 0.93194 0.89294 1.21618 0.97745 0.98106 1.00196 1.21120 1.31347 1.11929 0.90484 0.92993 1.24896 0.95015 0.94905 0.98693 1.69850 1.36688 1.22649 1.22933 0.86657 0.79179 0.79406 0.83068 1.20883 1.21271 1.20038 1.22222 0.99196 0.93960 0.90970 1.73409 1.16019 1.29537 1.07761 1.19355 0.93844 0.81209 0.93742 1.44554 1.40910 1.20064 1.23157 0.73484 1.24594 0.83517 0.95785 0.83496 1.67736 1.33174 1.12245 1.18237 1.17542 0.87868 0.87701 0.86317 1.42055 1.51836 1.24457 1.19576 1.19582 1.13968 0.94940 0.98446 1.98276 1.86713 1.26279 1.90753 0.97068 0.89976 0.96945 0.96260 0.90749 0.95988 0.93154 0.91335 0.97028 0.77946 0.75712 0.76686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.09 37.16 0.30 -2.77 16 2 C 0.07 1.84 0.57 -155.66 -0.09 1.75 16 3 C -0.12 -3.09 8.09 37.16 0.30 -2.79 16 4 C -0.51 -13.68 8.01 -34.44 -0.28 -13.96 16 5 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.74 9.35 55.43 0.52 -24.22 16 8 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.07 1.43 5.12 -4.04 -0.02 1.41 16 13 N -0.54 -11.26 8.61 -60.16 -0.52 -11.78 16 14 C 0.39 6.80 7.32 -155.53 -1.14 5.66 16 15 N -0.66 -8.87 5.28 -13.18 -0.07 -8.94 16 16 H 0.42 5.53 6.39 -40.82 -0.26 5.27 16 17 C 0.42 4.26 12.38 -90.00 -1.11 3.14 16 18 N -0.58 -6.99 10.39 -13.41 -0.14 -7.13 16 19 C 0.43 5.73 7.76 -154.37 -1.20 4.53 16 20 N -0.84 -8.33 9.00 31.10 0.28 -8.05 16 21 C -0.23 -3.63 6.42 -38.55 -0.25 -3.88 16 22 Cl -0.05 -0.76 27.25 -51.86 -1.41 -2.18 16 23 H 0.01 0.25 7.45 -51.93 -0.39 -0.13 16 24 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 2.09 6.07 -51.93 -0.32 1.77 16 28 H 0.02 0.55 7.60 -51.93 -0.39 0.15 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 30 H 0.07 1.54 8.14 -51.94 -0.42 1.12 16 31 H 0.01 0.23 5.59 -51.93 -0.29 -0.07 16 32 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.41 3.76 7.49 -40.82 -0.31 3.46 16 34 H 0.40 3.09 8.95 -40.82 -0.37 2.72 16 LS Contribution 293.83 15.07 4.43 4.43 Total: -1.00 -32.12 293.83 -9.38 -41.50 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -3.87 Total: 5.61 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -3.57 Total: -5.20 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.07 Total: -60.12 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.41 Total: -2.18 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.12 -9.38 -41.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413408961.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.953 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds