Wall clock time and date at job start Mon Mar 30 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50703 * 109.46663 * 239.99914 * 2 1 3 5 5 H 1.08007 * 119.99831 * 240.00085 * 4 2 1 6 6 C 1.37875 * 120.00014 * 60.00407 * 4 2 1 7 7 N 1.31512 * 119.99968 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99888 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46806 * 89.99952 * 8 6 4 10 10 H 1.48499 * 109.47115 * 210.00115 * 8 6 4 11 11 H 1.48503 * 109.46961 * 330.00118 * 8 6 4 12 12 C 1.53001 * 109.47010 * 120.00499 * 2 1 3 13 13 N 1.46503 * 109.46453 * 299.99655 * 12 2 1 14 14 C 1.31801 * 120.00071 * 114.57757 * 13 12 2 15 15 N 1.38137 * 120.86096 * 353.95120 * 14 13 12 16 16 H 0.96996 * 120.15319 * 0.04273 * 15 14 13 17 17 C 1.35679 * 119.70246 * 180.02562 * 15 14 13 18 18 N 1.30253 * 121.64065 * 359.70826 * 17 15 14 19 19 C 1.34378 * 121.87239 * 0.58640 * 18 17 15 20 20 N 1.38389 * 119.96272 * 179.69746 * 19 18 17 21 21 C 1.37860 * 120.07707 * 359.42401 * 19 18 17 22 22 Cl 1.73595 * 120.78467 * 180.25049 * 21 19 18 23 23 H 1.08996 * 109.46981 * 299.99874 * 1 2 3 24 24 H 1.09003 * 109.47119 * 59.99929 * 1 2 3 25 25 H 1.08997 * 109.47661 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46889 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47257 * 299.99763 * 3 2 1 28 28 H 1.08996 * 109.47016 * 60.00147 * 3 2 1 29 29 H 0.96999 * 119.99503 * 179.97438 * 7 6 4 30 30 H 1.08989 * 109.47193 * 180.02562 * 12 2 1 31 31 H 1.08994 * 109.47160 * 59.99119 * 12 2 1 32 32 H 1.07998 * 119.18108 * 180.02562 * 17 15 14 33 33 H 0.97008 * 120.00192 * 179.72446 * 20 19 18 34 34 H 0.97000 * 120.00322 * 359.45529 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3445 -2.1616 -4.4123 10 1 2.4872 -0.1403 -5.1121 11 1 3.6306 -1.7568 -3.7120 12 6 2.0400 -0.7214 1.2492 13 7 1.5516 -0.0307 2.4453 14 6 0.7081 -0.6357 3.2575 15 7 0.1769 -1.8697 2.9363 16 1 0.4225 -2.3045 2.1047 17 6 -0.6899 -2.4712 3.7895 18 7 -1.0351 -1.9166 4.9163 19 6 -0.5623 -0.7157 5.2903 20 7 -0.9605 -0.1603 6.4937 21 6 0.3234 -0.0387 4.4792 22 17 0.9507 1.5108 4.9473 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.7088 1.1613 -3.4844 30 1 3.1299 -0.7210 1.2495 31 1 1.6765 -1.7489 1.2492 32 1 -1.0998 -3.4361 3.5302 33 1 -0.6165 0.7048 6.7661 34 1 -1.5867 -0.6342 7.0630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413408961.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:29 Heat of formation + Delta-G solvation = 35.550343 kcal Electronic energy + Delta-G solvation = -18756.744102 eV Core-core repulsion = 15750.180339 eV Total energy + Delta-G solvation = -3006.563764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.78918 -38.52443 -37.37871 -36.74643 -35.13206 -33.33011 -32.43301 -30.35900 -27.54628 -27.29854 -26.48848 -25.14588 -22.95215 -20.49186 -19.74001 -19.13927 -18.11134 -17.86139 -16.75938 -16.48997 -16.27152 -16.13576 -15.25324 -15.00730 -14.59742 -14.32189 -13.97987 -13.49102 -13.25676 -13.10457 -12.85959 -12.64348 -12.50654 -12.24418 -12.09645 -11.90196 -11.66116 -11.39568 -11.02623 -10.96991 -10.71495 -10.36626 -9.96332 -9.76458 -8.10894 -7.91412 -6.14978 0.00712 1.13242 1.43183 1.45913 1.49992 1.54575 2.13313 2.42408 2.47383 2.72809 3.25698 3.39344 3.94014 4.31415 4.37738 4.60118 4.62995 4.72196 4.82127 4.96590 5.15881 5.21954 5.41050 5.41481 5.51574 5.67856 5.71416 5.93103 6.13260 6.26071 6.34516 6.47974 6.49725 6.92821 7.12118 7.37434 7.53895 9.02262 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032170 B = 0.005096 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.158370 B = 5492.741875 C = 5999.480891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.065 3.935 3 C -0.104 4.104 4 C -0.524 4.524 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.907 5.907 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.290 1.290 11 H -0.272 1.272 12 C 0.082 3.918 13 N -0.600 5.600 14 C 0.399 3.601 15 N -0.656 5.656 16 H 0.427 0.573 17 C 0.433 3.567 18 N -0.589 5.589 19 C 0.454 3.546 20 N -0.818 5.818 21 C -0.277 4.277 22 Cl -0.060 7.060 23 H 0.008 0.992 24 H 0.051 0.949 25 H 0.025 0.975 26 H 0.009 0.991 27 H 0.049 0.951 28 H 0.018 0.982 29 H 0.257 0.743 30 H 0.047 0.953 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.416 0.584 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 -7.920 16.547 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.064 3.936 3 C -0.162 4.162 4 C -0.563 4.563 5 H 0.070 0.930 6 C -0.178 4.178 7 N -0.546 5.546 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.196 1.196 12 C -0.048 4.048 13 N -0.327 5.327 14 C 0.132 3.868 15 N -0.286 5.286 16 H 0.269 0.731 17 C 0.145 3.855 18 N -0.320 5.320 19 C 0.226 3.774 20 N -0.358 5.358 21 C -0.321 4.321 22 Cl -0.032 7.032 23 H 0.027 0.973 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.028 0.972 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.280 0.720 33 H 0.249 0.751 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.252 -7.057 16.918 19.368 hybrid contribution 0.803 -0.174 -1.801 1.980 sum -5.449 -7.231 15.117 17.621 Atomic orbital electron populations 1.21493 0.98085 0.97907 0.98697 1.18154 0.92294 0.92394 0.90713 1.21451 0.96867 0.99251 0.98636 1.21423 1.31288 1.12051 0.91491 0.92985 1.25612 0.95240 0.95558 1.01427 1.70005 1.37577 1.23779 1.23288 0.85689 0.78826 0.78329 0.79516 1.19949 1.21571 1.19637 1.21797 0.97932 0.94561 0.90491 1.73406 1.19866 1.30854 1.08569 1.19590 0.92017 0.81984 0.93210 1.44612 1.41146 1.19045 1.23841 0.73119 1.25870 0.81078 0.96742 0.81825 1.67933 1.33435 1.11501 1.19087 1.17765 0.85866 0.87523 0.86274 1.42136 1.50821 1.24464 1.18410 1.19667 1.17183 0.95826 0.99459 1.98257 1.87117 1.27042 1.90779 0.97263 0.92991 0.95569 0.97226 0.93253 0.96251 0.93382 0.93500 0.95209 0.72008 0.75108 0.74958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.11 8.09 71.98 0.58 -4.53 16 2 C 0.07 3.29 0.57 -52.93 -0.03 3.26 16 3 C -0.10 -5.62 8.09 71.98 0.58 -5.04 16 4 C -0.52 -28.23 8.01 25.60 0.21 -28.02 16 5 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 6 C 0.02 1.11 5.15 84.65 0.44 1.55 16 7 N -0.91 -51.74 9.35 21.45 0.20 -51.54 16 8 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 C 0.08 3.59 5.12 86.38 0.44 4.04 16 13 N -0.60 -25.03 8.61 -344.25 -2.96 -28.00 16 14 C 0.40 13.60 7.32 134.08 0.98 14.58 16 15 N -0.66 -16.03 5.28 -195.62 -1.03 -17.07 16 16 H 0.43 10.02 6.39 -92.71 -0.59 9.42 16 17 C 0.43 6.98 12.38 180.13 2.23 9.21 16 18 N -0.59 -11.80 10.39 -196.34 -2.04 -13.84 16 19 C 0.45 10.91 7.76 132.37 1.03 11.93 16 20 N -0.82 -13.98 9.00 -55.51 -0.50 -14.48 16 21 C -0.28 -8.59 6.42 22.94 0.15 -8.44 16 22 Cl -0.06 -1.89 27.25 -2.72 -0.07 -1.96 16 23 H 0.01 0.41 7.45 -2.39 -0.02 0.39 16 24 H 0.05 2.86 6.07 -2.39 -0.01 2.85 16 25 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.05 2.87 6.07 -2.39 -0.01 2.85 16 28 H 0.02 1.00 7.60 -2.39 -0.02 0.98 16 29 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.03 1.14 5.59 -2.39 -0.01 1.12 16 32 H 0.26 0.86 8.06 -2.91 -0.02 0.83 16 33 H 0.42 6.73 7.49 -92.70 -0.69 6.03 16 34 H 0.42 4.96 8.95 -92.71 -0.83 4.13 16 Total: -1.00 -71.23 293.83 1.27 -69.96 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -0.95 Total: 13.34 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 6.61 Total: -1.47 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -6.34 Total: -124.93 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.07 Total: -1.96 kcal Total: -71.23 1.27 -69.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413408961.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.513 kcal (2) G-P(sol) polarization free energy of solvation -71.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds