Wall clock time and date at job start Mon Mar 30 2020 01:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38330 * 120.03346 * 2 1 4 4 F 1.35109 * 119.99649 * 0.02562 * 3 2 1 5 5 C 1.38663 * 120.00475 * 180.27576 * 3 2 1 6 6 F 1.35104 * 119.95995 * 179.76475 * 5 3 2 7 7 C 1.38411 * 120.07700 * 359.49258 * 5 3 2 8 8 C 1.38131 * 120.07508 * 0.25108 * 7 5 3 9 9 C 1.38834 * 120.03853 * 179.76982 * 2 1 3 10 10 N 1.39812 * 120.04127 * 359.95050 * 9 2 1 11 11 C 1.46500 * 120.00046 * 180.02562 * 10 9 2 12 12 C 1.50693 * 109.47007 * 180.02562 * 11 10 9 13 13 O 1.21292 * 120.00320 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99809 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99856 * 179.97438 * 14 12 11 16 16 H 1.07993 * 120.00106 * 359.97438 * 15 14 12 17 17 C 1.38943 * 119.99732 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00213 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00314 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47069 * 90.00128 * 19 17 15 21 21 H 1.48501 * 109.47129 * 210.00372 * 19 17 15 22 22 H 1.48504 * 109.47056 * 330.00281 * 19 17 15 23 23 H 1.08999 * 109.47283 * 270.22924 * 1 2 3 24 24 H 1.09003 * 109.47575 * 30.23663 * 1 2 3 25 25 H 1.09005 * 109.46746 * 150.23627 * 1 2 3 26 26 H 1.08002 * 119.96054 * 180.27456 * 7 5 3 27 27 H 1.07999 * 120.00411 * 180.02562 * 8 7 5 28 28 H 0.96995 * 119.99996 * 0.02770 * 10 9 2 29 29 H 1.09000 * 109.47305 * 300.00487 * 11 10 9 30 30 H 1.09002 * 109.46982 * 59.99693 * 11 10 9 31 31 H 0.96997 * 120.00269 * 0.02562 * 14 12 11 32 32 H 0.96998 * 120.00998 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1976 0.0000 4 9 1.5244 2.3680 0.0005 5 6 3.5860 1.1969 -0.0058 6 9 4.2613 2.3671 -0.0106 7 6 4.2791 -0.0012 -0.0009 8 6 3.5910 -1.1989 0.0044 9 6 2.2020 -1.2019 0.0048 10 7 1.5046 -2.4136 0.0107 11 6 2.2389 -3.6813 0.0164 12 6 1.2612 -4.8280 0.0215 13 8 0.0684 -4.6081 0.0209 14 7 1.7122 -6.0981 0.0277 15 6 0.8227 -7.1414 0.0328 16 1 -0.2393 -6.9456 0.0323 17 6 1.2878 -8.4507 0.0397 18 7 0.4353 -9.4508 0.0452 19 14 3.1248 -8.7896 0.0413 20 1 3.6117 -8.8719 1.4417 21 1 3.3916 -10.0754 -0.6520 22 1 3.8314 -7.6906 -0.6647 23 1 -0.3634 0.0041 1.0276 24 1 -0.3634 0.8879 -0.5175 25 1 -0.3633 -0.8922 -0.5102 26 1 5.3591 0.0005 -0.0010 27 1 4.1330 -2.1331 0.0086 28 1 0.5347 -2.4150 0.0111 29 1 2.8654 -3.7424 -0.8735 30 1 2.8660 -3.7340 0.9064 31 1 2.6661 -6.2741 0.0292 32 1 0.7598 -10.3649 0.0496 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417082455.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:00 Heat of formation + Delta-G solvation = -98.944271 kcal Electronic energy + Delta-G solvation = -19676.845544 eV Core-core repulsion = 16080.360225 eV Total energy + Delta-G solvation = -3596.485319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.38742 -48.44461 -39.76284 -38.50624 -35.13546 -34.09665 -32.79410 -31.88655 -29.50722 -27.62014 -26.62159 -24.44517 -22.18133 -21.73032 -19.71831 -18.84010 -18.10342 -17.23121 -17.08072 -16.31597 -16.28921 -15.41962 -15.08669 -14.90564 -14.87553 -14.66477 -14.38960 -13.66526 -13.60970 -13.41268 -12.90273 -12.88570 -12.75844 -12.46011 -12.26567 -11.89658 -11.78319 -11.32095 -11.21482 -10.73457 -10.14559 -9.98427 -9.78495 -8.88446 -8.87635 -8.39960 -7.44619 -6.48662 -4.02010 0.93872 1.14805 2.90103 2.95180 3.04710 3.22159 3.37720 3.45712 3.90892 3.95103 4.39236 4.41080 4.52992 4.74421 4.95678 5.04513 5.19344 5.37459 5.45450 5.54683 5.59009 5.59520 5.68749 5.80533 6.00923 6.04981 6.06404 6.65622 7.11007 7.37527 7.71029 7.93429 8.35665 8.73326 9.20333 9.53087 10.63444 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037157 B = 0.003742 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.372765 B = 7479.893040 C = 8212.812749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.176 4.176 3 C 0.116 3.884 4 F -0.130 7.130 5 C -0.005 4.005 6 F -0.140 7.140 7 C -0.077 4.077 8 C -0.185 4.185 9 C 0.247 3.753 10 N -0.714 5.714 11 C 0.106 3.894 12 C 0.436 3.564 13 O -0.576 6.576 14 N -0.575 5.575 15 C -0.312 4.312 16 H 0.122 0.878 17 C 0.046 3.954 18 N -0.872 5.872 19 Si 0.880 3.120 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.268 1.268 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.416 0.584 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.374 0.626 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.834 15.861 -0.049 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.182 4.182 3 C 0.095 3.905 4 F -0.108 7.108 5 C -0.028 4.028 6 F -0.119 7.119 7 C -0.096 4.096 8 C -0.208 4.208 9 C 0.139 3.861 10 N -0.345 5.345 11 C -0.022 4.022 12 C 0.222 3.778 13 O -0.460 6.460 14 N -0.212 5.212 15 C -0.441 4.441 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.511 5.511 19 Si 0.706 3.294 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.193 1.193 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.160 0.840 27 H 0.157 0.843 28 H 0.257 0.743 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.207 0.793 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.053 15.601 -0.048 17.557 hybrid contribution 1.158 -0.132 -0.018 1.165 sum 9.211 15.469 -0.066 18.004 Atomic orbital electron populations 1.20572 0.89533 1.03408 1.02960 1.19129 0.97142 0.89817 1.12126 1.17129 0.88007 0.81417 1.03972 1.91484 1.80117 1.45425 1.93790 1.17299 0.88028 0.82482 1.14946 1.91467 1.79792 1.45675 1.94987 1.20727 1.00551 0.89838 0.98530 1.20577 0.91842 0.98516 1.09837 1.17406 0.91044 0.85394 0.92243 1.44672 1.09811 1.01118 1.78867 1.21068 0.94838 0.83883 1.02447 1.19552 0.89261 0.83603 0.85378 1.90556 1.16302 1.83691 1.55493 1.42117 1.08294 1.05476 1.65351 1.19440 0.92403 0.83361 1.48865 0.86085 1.25075 0.98524 0.95203 0.97062 1.69611 1.34323 0.99345 1.47799 0.86660 0.84522 0.79081 0.79103 1.19366 1.19920 1.19319 0.90764 0.91006 0.90799 0.84022 0.84322 0.74307 0.90084 0.90045 0.79309 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.39 36.01 0.34 -0.89 16 2 C -0.18 -2.23 5.90 -104.37 -0.62 -2.85 16 3 C 0.12 1.51 7.24 -39.39 -0.29 1.23 16 4 F -0.13 -1.76 16.39 2.25 0.04 -1.72 16 5 C -0.01 -0.07 7.30 -39.36 -0.29 -0.35 16 6 F -0.14 -1.86 17.18 2.25 0.04 -1.82 16 7 C -0.08 -0.81 10.01 -39.56 -0.40 -1.20 16 8 C -0.18 -2.02 9.31 -39.37 -0.37 -2.38 16 9 C 0.25 3.15 6.63 -83.75 -0.56 2.59 16 10 N -0.71 -10.13 5.61 -59.79 -0.34 -10.47 16 11 C 0.11 1.52 5.39 -5.20 -0.03 1.49 16 12 C 0.44 8.91 7.85 -10.99 -0.09 8.83 16 13 O -0.58 -14.06 15.24 5.55 0.08 -13.97 16 14 N -0.57 -12.50 5.09 -10.97 -0.06 -12.56 16 15 C -0.31 -8.29 10.16 -14.93 -0.15 -8.45 16 16 H 0.12 3.71 7.39 -52.49 -0.39 3.32 16 17 C 0.05 1.19 5.50 -17.47 -0.10 1.09 16 18 N -0.87 -24.25 13.96 55.50 0.77 -23.48 16 19 Si 0.88 18.02 27.74 -169.99 -4.71 13.31 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.27 -4.90 6.52 56.52 0.37 -4.53 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.76 7.65 -51.93 -0.40 0.36 16 25 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 26 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.14 1.25 6.73 -52.49 -0.35 0.90 16 28 H 0.42 6.42 5.43 -40.82 -0.22 6.20 16 29 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 30 H 0.08 0.99 7.95 -51.93 -0.41 0.57 16 31 H 0.37 6.97 5.76 -40.82 -0.24 6.74 16 32 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 286.55 15.07 4.32 4.32 Total: -1.00 -29.94 286.55 -5.16 -35.10 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -2.77 Total: 12.19 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.53 Total: -0.90 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.38 Total: -46.50 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.08 Total: -13.97 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.08 Total: -3.54 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -4.71 Total: 13.31 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.94 -5.16 -35.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417082455.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.843 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds