Wall clock time and date at job start Mon Mar 30 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38330 * 120.03346 * 2 1 4 4 F 1.35109 * 119.99649 * 0.02562 * 3 2 1 5 5 C 1.38663 * 120.00475 * 180.27576 * 3 2 1 6 6 F 1.35104 * 119.95995 * 179.76475 * 5 3 2 7 7 C 1.38411 * 120.07700 * 359.49258 * 5 3 2 8 8 C 1.38131 * 120.07508 * 0.25108 * 7 5 3 9 9 C 1.38834 * 120.03853 * 179.76982 * 2 1 3 10 10 N 1.39812 * 120.04127 * 359.95050 * 9 2 1 11 11 C 1.46500 * 120.00046 * 180.02562 * 10 9 2 12 12 C 1.50693 * 109.47007 * 180.02562 * 11 10 9 13 13 O 1.21292 * 120.00320 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99809 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99856 * 179.97438 * 14 12 11 16 16 H 1.07993 * 120.00106 * 359.97438 * 15 14 12 17 17 C 1.38943 * 119.99732 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00213 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00314 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47069 * 90.00128 * 19 17 15 21 21 H 1.48501 * 109.47129 * 210.00372 * 19 17 15 22 22 H 1.48504 * 109.47056 * 330.00281 * 19 17 15 23 23 H 1.08999 * 109.47283 * 270.22924 * 1 2 3 24 24 H 1.09003 * 109.47575 * 30.23663 * 1 2 3 25 25 H 1.09005 * 109.46746 * 150.23627 * 1 2 3 26 26 H 1.08002 * 119.96054 * 180.27456 * 7 5 3 27 27 H 1.07999 * 120.00411 * 180.02562 * 8 7 5 28 28 H 0.96995 * 119.99996 * 0.02770 * 10 9 2 29 29 H 1.09000 * 109.47305 * 300.00487 * 11 10 9 30 30 H 1.09002 * 109.46982 * 59.99693 * 11 10 9 31 31 H 0.96997 * 120.00269 * 0.02562 * 14 12 11 32 32 H 0.96998 * 120.00998 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1976 0.0000 4 9 1.5244 2.3680 0.0005 5 6 3.5860 1.1969 -0.0058 6 9 4.2613 2.3671 -0.0106 7 6 4.2791 -0.0012 -0.0009 8 6 3.5910 -1.1989 0.0044 9 6 2.2020 -1.2019 0.0048 10 7 1.5046 -2.4136 0.0107 11 6 2.2389 -3.6813 0.0164 12 6 1.2612 -4.8280 0.0215 13 8 0.0684 -4.6081 0.0209 14 7 1.7122 -6.0981 0.0277 15 6 0.8227 -7.1414 0.0328 16 1 -0.2393 -6.9456 0.0323 17 6 1.2878 -8.4507 0.0397 18 7 0.4353 -9.4508 0.0452 19 14 3.1248 -8.7896 0.0413 20 1 3.6117 -8.8719 1.4417 21 1 3.3916 -10.0754 -0.6520 22 1 3.8314 -7.6906 -0.6647 23 1 -0.3634 0.0041 1.0276 24 1 -0.3634 0.8879 -0.5175 25 1 -0.3633 -0.8922 -0.5102 26 1 5.3591 0.0005 -0.0010 27 1 4.1330 -2.1331 0.0086 28 1 0.5347 -2.4150 0.0111 29 1 2.8654 -3.7424 -0.8735 30 1 2.8660 -3.7340 0.9064 31 1 2.6661 -6.2741 0.0292 32 1 0.7598 -10.3649 0.0496 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417082455.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:59 Heat of formation + Delta-G solvation = -119.656316 kcal Electronic energy + Delta-G solvation = -19677.743686 eV Core-core repulsion = 16080.360225 eV Total energy + Delta-G solvation = -3597.383461 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.37672 -49.43379 -40.88901 -39.99629 -36.43648 -35.73292 -33.87319 -33.64562 -30.59205 -28.74214 -27.72684 -26.06649 -23.18895 -22.69624 -21.38891 -20.48116 -19.25954 -18.29163 -18.09479 -17.57090 -17.29987 -16.97382 -16.40266 -16.25776 -15.92695 -15.90004 -15.37725 -15.02209 -14.73174 -14.53248 -14.44390 -14.08392 -13.97657 -13.74818 -13.55961 -13.00408 -12.82330 -12.69893 -12.42439 -12.11554 -11.97441 -11.55287 -10.94660 -10.62344 -10.30511 -9.78401 -8.43546 -8.42870 -6.06530 0.04083 0.22424 1.32685 1.37387 1.47435 1.84215 2.11435 2.23720 2.49466 2.90499 3.01888 3.13127 3.44897 3.67744 3.87898 3.98776 4.08480 4.34766 4.40472 4.50188 4.53982 4.64591 4.79808 4.96530 5.13027 5.15356 5.18801 5.48389 5.72780 5.88811 6.16226 6.52473 6.59264 6.81645 7.31801 7.83774 8.73314 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037157 B = 0.003742 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.372765 B = 7479.893040 C = 8212.812749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.184 4.184 3 C 0.097 3.903 4 F -0.139 7.139 5 C -0.017 4.017 6 F -0.147 7.147 7 C -0.065 4.065 8 C -0.174 4.174 9 C 0.237 3.763 10 N -0.726 5.726 11 C 0.118 3.882 12 C 0.440 3.560 13 O -0.622 6.622 14 N -0.577 5.577 15 C -0.334 4.334 16 H 0.057 0.943 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.964 3.036 20 H -0.256 1.256 21 H -0.278 1.278 22 H -0.223 1.223 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.175 0.825 27 H 0.169 0.831 28 H 0.407 0.593 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.394 0.606 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.945 16.554 -0.087 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.190 4.190 3 C 0.077 3.923 4 F -0.117 7.117 5 C -0.039 4.039 6 F -0.126 7.126 7 C -0.085 4.085 8 C -0.197 4.197 9 C 0.130 3.870 10 N -0.357 5.357 11 C -0.009 4.009 12 C 0.228 3.772 13 O -0.509 6.509 14 N -0.217 5.217 15 C -0.463 4.463 16 H 0.075 0.925 17 C -0.211 4.211 18 N -0.571 5.571 19 Si 0.783 3.217 20 H -0.180 1.180 21 H -0.204 1.204 22 H -0.146 1.146 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.192 0.808 27 H 0.186 0.814 28 H 0.246 0.754 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.231 0.769 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.190 16.345 -0.088 20.391 hybrid contribution -0.250 -0.230 -0.002 0.339 sum 11.941 16.116 -0.090 20.057 Atomic orbital electron populations 1.20567 0.89406 1.03306 1.03146 1.19234 0.97517 0.90003 1.12276 1.17330 0.88544 0.81297 1.05164 1.91455 1.80392 1.45885 1.94000 1.17610 0.87892 0.83088 1.15265 1.91450 1.79816 1.46283 1.95072 1.21061 1.02070 0.88615 0.96713 1.20920 0.90893 0.99857 1.07985 1.17545 0.91896 0.84548 0.92988 1.44676 1.09454 1.01559 1.79993 1.21117 0.93091 0.80893 1.05798 1.20783 0.89782 0.84617 0.82047 1.90549 1.19223 1.84663 1.56420 1.41891 1.08560 1.04864 1.66403 1.18999 0.90743 0.85649 1.50878 0.92519 1.26162 1.05319 0.94045 0.95623 1.69797 1.37725 1.00108 1.49421 0.85383 0.76300 0.79894 0.80092 1.18049 1.20359 1.14597 0.90482 0.90612 0.91332 0.80800 0.81360 0.75429 0.86523 0.86404 0.76923 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 9.39 71.24 0.67 -1.77 16 2 C -0.18 -4.45 5.90 -19.70 -0.12 -4.56 16 3 C 0.10 2.44 7.24 22.39 0.16 2.60 16 4 F -0.14 -3.72 16.39 44.97 0.74 -2.99 16 5 C -0.02 -0.38 7.30 22.41 0.16 -0.21 16 6 F -0.15 -3.63 17.18 44.97 0.77 -2.86 16 7 C -0.07 -1.10 10.01 22.29 0.22 -0.87 16 8 C -0.17 -2.97 9.31 22.40 0.21 -2.76 16 9 C 0.24 5.36 6.63 38.17 0.25 5.61 16 10 N -0.73 -18.87 5.61 -343.09 -1.92 -20.79 16 11 C 0.12 2.91 5.39 85.63 0.46 3.38 16 12 C 0.44 17.42 7.85 87.65 0.69 18.11 16 13 O -0.62 -31.11 15.24 -3.07 -0.05 -31.16 16 14 N -0.58 -24.29 5.09 -306.99 -1.56 -25.85 16 15 C -0.33 -18.27 10.16 84.04 0.85 -17.42 16 16 H 0.06 3.75 7.39 -2.91 -0.02 3.73 16 17 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 18 N -0.93 -53.74 13.96 21.66 0.30 -53.44 16 19 Si 0.96 35.50 27.74 68.60 1.90 37.41 16 20 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 21 H -0.28 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.22 -6.55 6.52 99.48 0.65 -5.90 16 23 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 1.61 7.65 -2.39 -0.02 1.59 16 25 H 0.07 1.61 6.55 -2.38 -0.02 1.60 16 26 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 27 H 0.17 1.88 6.73 -2.91 -0.02 1.86 16 28 H 0.41 12.32 5.43 -92.71 -0.50 11.81 16 29 H 0.12 2.15 7.95 -2.39 -0.02 2.13 16 30 H 0.12 2.15 7.95 -2.39 -0.02 2.13 16 31 H 0.39 13.15 5.76 -92.71 -0.53 12.61 16 32 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -71.02 286.55 4.31 -66.70 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.10 Total: 31.04 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 4.03 Total: 1.93 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -3.18 Total: -100.07 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.05 Total: -31.16 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 1.51 Total: -5.84 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 1.90 Total: 37.41 kcal Total: -71.02 4.31 -66.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417082455.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.955 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds