Wall clock time and date at job start Mon Mar 30 2020 01:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47505 * 2 1 4 4 N 1.46495 * 109.47231 * 120.00653 * 2 1 3 5 5 N 1.40510 * 127.01683 * 300.04088 * 4 2 1 6 6 H 0.97000 * 126.62026 * 359.95916 * 5 4 2 7 7 C 1.35018 * 106.77365 * 179.97438 * 5 4 2 8 8 N 1.30822 * 109.35038 * 359.72704 * 7 5 4 9 9 C 1.34141 * 110.10507 * 0.44697 * 8 7 5 10 10 N 1.33144 * 126.09757 * 179.82031 * 9 8 7 11 11 C 1.33005 * 119.99644 * 359.69012 * 10 9 8 12 12 O 1.21570 * 119.99915 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99590 * 180.02562 * 11 10 9 14 14 S 1.81003 * 109.46846 * 180.02562 * 13 11 10 15 15 C 1.76196 * 99.99843 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00530 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99953 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99926 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99854 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46924 * 89.99941 * 19 17 15 21 21 H 1.48495 * 109.47401 * 209.99915 * 19 17 15 22 22 H 1.48500 * 109.47320 * 330.00345 * 19 17 15 23 23 H 1.08995 * 109.47539 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46990 * 300.00072 * 1 2 3 25 25 H 1.09002 * 109.47207 * 59.99242 * 1 2 3 26 26 H 1.09010 * 109.46271 * 240.00124 * 2 1 3 27 27 H 1.08997 * 109.47058 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47507 * 300.00574 * 3 2 1 29 29 H 1.09000 * 109.46780 * 60.00480 * 3 2 1 30 30 H 1.08003 * 125.33080 * 179.97438 * 7 5 4 31 31 H 1.09004 * 109.47237 * 300.00131 * 13 11 10 32 32 H 1.09000 * 109.47165 * 60.00285 * 13 11 10 33 33 H 0.97002 * 120.00168 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 7 1.7708 -0.3422 2.5345 6 1 1.2409 0.4070 2.8488 7 6 2.4131 -1.2510 3.2990 8 7 3.0186 -2.1164 2.5271 9 6 2.8097 -1.8097 1.2380 10 7 3.2819 -2.4763 0.1866 11 6 4.0427 -3.5521 0.3682 12 8 4.3065 -3.9269 1.4942 13 6 4.5776 -4.3062 -0.8218 14 16 5.5686 -5.7093 -0.2511 15 6 6.0528 -6.3924 -1.8014 16 1 5.7270 -5.9293 -2.7211 17 6 6.8541 -7.5252 -1.8407 18 7 7.2163 -8.0352 -2.9988 19 14 7.4195 -8.3250 -0.2501 20 1 6.4261 -9.3454 0.1712 21 1 8.7370 -8.9756 -0.4642 22 1 7.5445 -7.2898 0.8073 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 1.8932 -0.5139 -0.8901 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6769 1.9562 0.8900 30 1 2.4221 -1.2641 4.3789 31 1 3.7459 -4.6706 -1.4248 32 1 5.1991 -3.6426 -1.4230 33 1 7.7765 -8.8266 -3.0264 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425604450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:29 Heat of formation + Delta-G solvation = 93.561734 kcal Electronic energy + Delta-G solvation = -17887.838776 eV Core-core repulsion = 14885.834281 eV Total energy + Delta-G solvation = -3002.004495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.39035 -38.43404 -36.50112 -33.94462 -32.24235 -31.89215 -30.57804 -28.70890 -27.86345 -25.41247 -24.05582 -22.66828 -21.70122 -19.36272 -18.27143 -17.21220 -16.48599 -16.28536 -15.95778 -15.35284 -14.84442 -14.73822 -14.29518 -13.80223 -13.77887 -13.42236 -13.00515 -12.91892 -12.62703 -12.03365 -11.92231 -11.67433 -11.07207 -10.92608 -10.79435 -10.64915 -10.46894 -10.35796 -9.88845 -9.64098 -8.80918 -8.56449 -8.18899 -7.91242 -6.65304 -6.09949 -3.77845 0.80882 0.88514 2.62299 3.12024 3.28181 3.48098 3.67689 3.74063 4.08531 4.12343 4.19164 4.41055 4.47243 4.52572 4.61360 4.83588 4.88303 5.01246 5.12009 5.13104 5.29242 5.31341 5.42898 5.60186 5.71904 5.91762 6.29503 6.53788 6.60873 7.07978 7.51370 8.09990 8.13933 8.62749 9.19952 9.37397 10.99626 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037509 B = 0.003984 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.304131 B = 7026.812627 C = 7582.049187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.165 3.835 3 C -0.167 4.167 4 N -0.407 5.407 5 N -0.501 5.501 6 H 0.447 0.553 7 C 0.360 3.640 8 N -0.524 5.524 9 C 0.597 3.403 10 N -0.646 5.646 11 C 0.503 3.497 12 O -0.505 6.505 13 C -0.091 4.091 14 S -0.159 6.159 15 C -0.513 4.513 16 H 0.087 0.913 17 C 0.093 3.907 18 N -0.886 5.886 19 Si 0.858 3.142 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.235 1.235 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.134 0.866 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.238 0.762 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.826 23.954 11.636 31.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.064 3.936 3 C -0.225 4.225 4 N -0.215 5.215 5 N -0.227 5.227 6 H 0.294 0.706 7 C 0.064 3.936 8 N -0.257 5.257 9 C 0.238 3.762 10 N -0.409 5.409 11 C 0.287 3.713 12 O -0.378 6.378 13 C -0.241 4.241 14 S 0.067 5.933 15 C -0.660 4.660 16 H 0.105 0.895 17 C -0.114 4.114 18 N -0.524 5.524 19 Si 0.683 3.317 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.159 1.159 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.151 0.849 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.254 0.746 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.950 22.708 12.280 30.346 hybrid contribution -0.606 0.800 -0.282 1.043 sum -16.556 23.509 11.998 31.156 Atomic orbital electron populations 1.22253 0.93777 1.03554 1.02948 1.21599 0.94674 0.93466 0.83828 1.22252 1.02810 0.94525 1.02945 1.48189 1.50123 1.27800 0.95358 1.45266 1.50539 1.30425 0.96508 0.70578 1.26277 0.85244 0.82736 0.99370 1.72212 1.26653 1.26011 1.00850 1.21112 0.83881 0.82512 0.88645 1.69379 1.28822 1.17491 1.25232 1.20632 0.78849 0.82063 0.89768 1.90768 1.54510 1.67073 1.25401 1.22907 1.02575 0.99780 0.98869 1.84636 1.63581 1.30773 1.14305 1.22372 1.36655 1.15428 0.91584 0.89493 1.24714 0.94516 0.95625 0.96583 1.69953 1.35703 1.22372 1.24341 0.86714 0.78717 0.81537 0.84776 1.19357 1.20217 1.15852 0.91250 0.92595 0.89935 0.84875 0.91248 0.89931 0.92601 0.74625 0.88975 0.88928 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 9.48 37.16 0.35 -0.45 16 2 C 0.17 1.16 3.76 -67.93 -0.26 0.91 16 3 C -0.17 -0.80 9.48 37.16 0.35 -0.45 16 4 N -0.41 -3.90 3.37 -55.58 -0.19 -4.09 16 5 N -0.50 -2.55 7.26 29.64 0.22 -2.33 16 6 H 0.45 0.21 8.96 -182.29 -1.63 -1.42 16 7 C 0.36 2.54 13.06 -90.13 -1.18 1.36 16 8 N -0.52 -7.93 9.18 -14.92 -0.14 -8.07 16 9 C 0.60 9.44 8.39 -321.65 -2.70 6.74 16 10 N -0.65 -12.64 10.17 -13.32 -0.14 -12.77 16 11 C 0.50 11.82 7.73 -11.77 -0.09 11.73 16 12 O -0.50 -13.14 14.38 5.30 0.08 -13.07 16 13 C -0.09 -2.21 6.23 36.00 0.22 -1.99 16 14 S -0.16 -4.57 18.54 -107.50 -1.99 -6.57 16 15 C -0.51 -16.14 10.04 30.94 0.31 -15.83 16 16 H 0.09 2.85 8.03 -52.49 -0.42 2.43 16 17 C 0.09 2.92 5.50 -17.43 -0.10 2.82 16 18 N -0.89 -28.36 13.97 55.49 0.78 -27.58 16 19 Si 0.86 23.36 27.74 -169.99 -4.71 18.65 16 20 H -0.27 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.23 -6.43 6.74 56.52 0.38 -6.05 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.18 8.14 -51.92 -0.42 -0.24 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.13 1.20 7.81 -51.92 -0.41 0.79 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.24 0.26 8.06 -52.48 -0.42 -0.16 16 31 H 0.09 2.16 8.14 -51.91 -0.42 1.74 16 32 H 0.09 2.17 8.14 -51.92 -0.42 1.75 16 33 H 0.27 7.96 8.31 -40.82 -0.34 7.62 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -43.97 305.54 -10.00 -53.96 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: -5.42 Total: -7.59 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -3.08 Total: 4.84 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.53 Total: -54.84 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.71 Total: 18.65 kcal Atomic # 16 Polarization: -4.57 SS G_CDS: -1.99 Total: -6.57 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -43.97 -10.00 -53.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425604450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.525 kcal (2) G-P(sol) polarization free energy of solvation -43.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds