Wall clock time and date at job start Mon Mar 30 2020 01:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47505 * 2 1 4 4 N 1.46495 * 109.47231 * 120.00653 * 2 1 3 5 5 N 1.40510 * 127.01683 * 300.04088 * 4 2 1 6 6 H 0.97000 * 126.62026 * 359.95916 * 5 4 2 7 7 C 1.35018 * 106.77365 * 179.97438 * 5 4 2 8 8 N 1.30822 * 109.35038 * 359.72704 * 7 5 4 9 9 C 1.34141 * 110.10507 * 0.44697 * 8 7 5 10 10 N 1.33144 * 126.09757 * 179.82031 * 9 8 7 11 11 C 1.33005 * 119.99644 * 359.69012 * 10 9 8 12 12 O 1.21570 * 119.99915 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99590 * 180.02562 * 11 10 9 14 14 S 1.81003 * 109.46846 * 180.02562 * 13 11 10 15 15 C 1.76196 * 99.99843 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00530 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99953 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99926 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99854 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46924 * 89.99941 * 19 17 15 21 21 H 1.48495 * 109.47401 * 209.99915 * 19 17 15 22 22 H 1.48500 * 109.47320 * 330.00345 * 19 17 15 23 23 H 1.08995 * 109.47539 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46990 * 300.00072 * 1 2 3 25 25 H 1.09002 * 109.47207 * 59.99242 * 1 2 3 26 26 H 1.09010 * 109.46271 * 240.00124 * 2 1 3 27 27 H 1.08997 * 109.47058 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47507 * 300.00574 * 3 2 1 29 29 H 1.09000 * 109.46780 * 60.00480 * 3 2 1 30 30 H 1.08003 * 125.33080 * 179.97438 * 7 5 4 31 31 H 1.09004 * 109.47237 * 300.00131 * 13 11 10 32 32 H 1.09000 * 109.47165 * 60.00285 * 13 11 10 33 33 H 0.97002 * 120.00168 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 7 1.7708 -0.3422 2.5345 6 1 1.2409 0.4070 2.8488 7 6 2.4131 -1.2510 3.2990 8 7 3.0186 -2.1164 2.5271 9 6 2.8097 -1.8097 1.2380 10 7 3.2819 -2.4763 0.1866 11 6 4.0427 -3.5521 0.3682 12 8 4.3065 -3.9269 1.4942 13 6 4.5776 -4.3062 -0.8218 14 16 5.5686 -5.7093 -0.2511 15 6 6.0528 -6.3924 -1.8014 16 1 5.7270 -5.9293 -2.7211 17 6 6.8541 -7.5252 -1.8407 18 7 7.2163 -8.0352 -2.9988 19 14 7.4195 -8.3250 -0.2501 20 1 6.4261 -9.3454 0.1712 21 1 8.7370 -8.9756 -0.4642 22 1 7.5445 -7.2898 0.8073 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 1.8932 -0.5139 -0.8901 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6769 1.9562 0.8900 30 1 2.4221 -1.2641 4.3789 31 1 3.7459 -4.6706 -1.4248 32 1 5.1991 -3.6426 -1.4230 33 1 7.7765 -8.8266 -3.0264 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425604450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:29 Heat of formation + Delta-G solvation = 61.103510 kcal Electronic energy + Delta-G solvation = -17889.246270 eV Core-core repulsion = 14885.834281 eV Total energy + Delta-G solvation = -3003.411989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.29366 -39.98687 -37.15064 -35.12548 -34.65967 -32.82332 -31.74614 -30.32059 -28.26865 -27.84437 -24.78303 -23.80451 -22.51207 -20.56775 -19.68019 -18.91005 -17.45236 -17.37128 -17.21877 -17.08536 -16.04173 -15.92694 -15.79764 -15.44406 -15.13402 -14.86089 -14.31627 -13.61782 -13.47616 -13.33797 -13.23560 -12.98614 -12.60943 -12.55157 -12.17356 -12.08488 -11.83742 -11.54080 -11.38000 -11.27257 -11.15058 -10.51908 -10.07351 -9.13341 -8.93987 -8.49963 -6.20605 -0.12735 0.12283 1.06040 1.32512 1.50700 1.52029 1.64631 2.28614 2.53446 2.73210 2.75065 2.87604 3.31381 3.50701 3.58747 3.86533 4.05556 4.12667 4.36811 4.45829 4.52201 4.56751 4.58961 4.75243 4.87102 5.01858 5.14981 5.18942 5.60069 5.72918 6.11600 6.27123 6.40201 6.94528 6.97194 7.68671 8.63223 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037509 B = 0.003984 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.304131 B = 7026.812627 C = 7582.049187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.153 3.847 3 C -0.159 4.159 4 N -0.392 5.392 5 N -0.458 5.458 6 H 0.475 0.525 7 C 0.387 3.613 8 N -0.598 5.598 9 C 0.585 3.415 10 N -0.678 5.678 11 C 0.503 3.497 12 O -0.553 6.553 13 C -0.078 4.078 14 S -0.178 6.178 15 C -0.531 4.531 16 H 0.055 0.945 17 C 0.046 3.954 18 N -0.919 5.919 19 Si 0.920 3.080 20 H -0.260 1.260 21 H -0.253 1.253 22 H -0.240 1.240 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.300 0.700 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.725 26.653 14.320 35.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 C -0.217 4.217 4 N -0.196 5.196 5 N -0.185 5.185 6 H 0.329 0.671 7 C 0.093 3.907 8 N -0.333 5.333 9 C 0.225 3.775 10 N -0.447 5.447 11 C 0.286 3.714 12 O -0.429 6.429 13 C -0.229 4.229 14 S 0.048 5.952 15 C -0.679 4.679 16 H 0.073 0.927 17 C -0.159 4.159 18 N -0.557 5.557 19 Si 0.741 3.259 20 H -0.184 1.184 21 H -0.177 1.177 22 H -0.164 1.164 23 H 0.066 0.934 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.125 0.875 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.314 0.686 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.973 25.582 15.005 34.679 hybrid contribution -0.279 0.328 -1.049 1.134 sum -18.252 25.911 13.956 34.631 Atomic orbital electron populations 1.22212 0.91312 1.02857 1.05275 1.21923 0.96439 0.94262 0.82015 1.22210 1.01396 0.92775 1.05272 1.48546 1.47328 1.25767 0.97923 1.45482 1.48608 1.30188 0.94270 0.67120 1.27449 0.81992 0.80214 1.01039 1.72095 1.30282 1.29734 1.01214 1.21094 0.84181 0.83497 0.88774 1.69115 1.30918 1.17654 1.26988 1.20363 0.79542 0.83156 0.88348 1.90716 1.57329 1.68813 1.26083 1.22856 1.01838 0.98165 0.99998 1.84449 1.64760 1.32979 1.12998 1.22478 1.37387 1.16159 0.91856 0.92663 1.25603 0.94277 0.95912 1.00122 1.70023 1.36198 1.23089 1.26376 0.85800 0.79411 0.80510 0.80197 1.18438 1.17667 1.16363 0.93416 0.89926 0.87974 0.87548 0.93409 0.87970 0.89933 0.68551 0.88859 0.88814 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.48 71.98 0.68 -0.34 16 2 C 0.15 1.85 3.76 44.99 0.17 2.02 16 3 C -0.16 -1.02 9.48 71.98 0.68 -0.34 16 4 N -0.39 -6.67 3.37 -329.77 -1.11 -7.78 16 5 N -0.46 -2.58 7.26 -60.14 -0.44 -3.02 16 6 H 0.47 -2.54 8.96 -213.05 -1.91 -4.45 16 7 C 0.39 3.92 13.06 180.18 2.35 6.27 16 8 N -0.60 -17.48 9.18 -201.11 -1.85 -19.32 16 9 C 0.58 18.41 8.39 261.08 2.19 20.60 16 10 N -0.68 -27.70 10.17 -315.30 -3.21 -30.91 16 11 C 0.50 24.81 7.73 87.93 0.68 25.49 16 12 O -0.55 -30.03 14.38 -3.94 -0.06 -30.08 16 13 C -0.08 -4.00 6.23 71.23 0.44 -3.56 16 14 S -0.18 -10.60 18.54 -56.49 -1.05 -11.65 16 15 C -0.53 -34.80 10.04 67.96 0.68 -34.12 16 16 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 17 C 0.05 2.93 5.50 84.86 0.47 3.39 16 18 N -0.92 -59.82 13.97 21.65 0.30 -59.51 16 19 Si 0.92 48.79 27.74 68.60 1.90 50.69 16 20 H -0.26 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.25 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.24 -12.87 6.74 99.48 0.67 -12.19 16 23 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.08 0.10 8.14 -2.38 -0.02 0.08 16 25 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.11 1.94 7.81 -2.38 -0.02 1.92 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.30 -1.16 8.06 -2.91 -0.02 -1.18 16 31 H 0.09 4.66 8.14 -2.39 -0.02 4.64 16 32 H 0.09 4.69 8.14 -2.39 -0.02 4.67 16 33 H 0.28 16.57 8.31 -92.71 -0.77 15.80 16 Total: -1.00 -103.55 305.54 2.04 -101.51 By element: Atomic # 1 Polarization: -8.54 SS G_CDS: -0.82 Total: -9.35 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 8.35 Total: 19.43 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -6.30 Total: -120.55 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.06 Total: -30.08 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 1.90 Total: 50.69 kcal Atomic # 16 Polarization: -10.60 SS G_CDS: -1.05 Total: -11.65 kcal Total: -103.55 2.04 -101.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425604450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.614 kcal (2) G-P(sol) polarization free energy of solvation -103.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds