Wall clock time and date at job start Mon Mar 30 2020 01:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00065 * 2 1 4 4 H 1.48504 * 109.47390 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47183 * 299.99842 * 3 2 1 6 6 H 1.48496 * 109.47130 * 59.99886 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00455 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47426 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00211 * 179.97438 * 10 9 7 12 12 O 1.21586 * 120.00048 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99940 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47148 * 179.72251 * 14 13 11 16 16 C 1.38208 * 120.00036 * 259.72086 * 15 14 13 17 17 C 1.38428 * 119.99897 * 179.77046 * 16 15 14 18 18 F 1.35106 * 119.99725 * 180.27389 * 17 16 15 19 19 C 1.38463 * 119.99986 * 0.52999 * 17 16 15 20 20 C 1.38165 * 120.00379 * 359.72394 * 19 17 16 21 21 C 1.38428 * 120.00231 * 80.00018 * 15 14 13 22 22 F 1.35106 * 119.99820 * 359.97390 * 21 15 14 23 23 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47083 * 59.99434 * 9 7 2 25 25 H 1.09001 * 109.46875 * 299.99697 * 9 7 2 26 26 H 0.97004 * 119.99747 * 0.02562 * 10 9 7 27 27 H 0.97005 * 120.00161 * 359.72198 * 13 11 10 28 28 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 29 29 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 30 30 H 1.08000 * 119.99461 * 0.02562 * 16 15 14 31 31 H 1.08006 * 120.00133 * 179.70461 * 19 17 16 32 32 H 1.07992 * 120.00134 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5584 -5.1056 0.0011 13 7 2.6296 -5.9078 0.0016 14 6 2.1413 -7.2891 0.0016 15 6 3.3134 -8.2362 -0.0047 16 6 3.7118 -8.8349 -1.1849 17 6 4.7914 -9.7013 -1.1915 18 9 5.1842 -10.2823 -2.3463 19 6 5.4653 -9.9766 -0.0137 20 6 5.0639 -9.3821 1.1672 21 6 3.9875 -8.5111 1.1727 22 9 3.5949 -7.9298 2.3274 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5568 0.8903 26 1 3.1567 -3.4355 0.0009 27 1 3.5833 -5.7305 -0.0025 28 1 1.5394 -7.4615 0.8938 29 1 1.5320 -7.4590 -0.8861 30 1 3.1832 -8.6236 -2.1027 31 1 6.3047 -10.6562 -0.0179 32 1 5.5893 -9.5972 2.0858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426428636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:50 Heat of formation + Delta-G solvation = -101.306323 kcal Electronic energy + Delta-G solvation = -19392.350306 eV Core-core repulsion = 15795.762561 eV Total energy + Delta-G solvation = -3596.587746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.26886 -49.18057 -39.65782 -38.83258 -34.96314 -34.01044 -32.39949 -31.60986 -30.35440 -27.52721 -25.91726 -23.39577 -22.67354 -21.84372 -20.21846 -18.35841 -17.90957 -17.55290 -17.44585 -16.27122 -16.05835 -15.72201 -15.49228 -14.95414 -14.73663 -14.60537 -14.56654 -13.92927 -13.67497 -13.29187 -13.10896 -12.84533 -12.58535 -12.23872 -11.95706 -11.67926 -11.35374 -10.91472 -10.89584 -10.29311 -9.77129 -9.37640 -9.33518 -8.92182 -8.81832 -8.68570 -7.75802 -6.14015 -4.20386 0.48957 0.58697 2.84620 3.25285 3.31866 3.34965 3.49646 3.76532 3.80859 3.93755 4.11830 4.27731 4.34677 4.54425 4.72297 5.10874 5.22124 5.25006 5.26385 5.50506 5.57585 5.63024 5.73898 5.87887 6.36395 6.74814 7.10329 7.52031 7.55974 7.58749 7.90593 8.04878 8.77711 8.93807 9.32816 9.48775 10.96330 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.003301 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.957770 B = 8479.286781 C = 8559.909481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.728 5.728 11 C 0.695 3.305 12 O -0.599 6.599 13 N -0.754 5.754 14 C 0.183 3.817 15 C -0.107 4.107 16 C -0.105 4.105 17 C 0.086 3.914 18 F -0.135 7.135 19 C -0.121 4.121 20 C -0.128 4.128 21 C 0.109 3.891 22 F -0.125 7.125 23 H 0.265 0.735 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.387 0.613 27 H 0.392 0.608 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.610 -20.485 0.059 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.380 5.380 11 C 0.394 3.606 12 O -0.478 6.478 13 N -0.412 5.412 14 C 0.058 3.942 15 C -0.109 4.109 16 C -0.125 4.125 17 C 0.067 3.933 18 F -0.113 7.113 19 C -0.140 4.140 20 C -0.147 4.147 21 C 0.088 3.912 22 F -0.103 7.103 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.219 0.781 27 H 0.225 0.775 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.167 0.833 31 H 0.164 0.836 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.272 -20.502 0.064 23.397 hybrid contribution 1.365 1.018 0.005 1.703 sum 12.637 -19.484 0.069 23.223 Atomic orbital electron populations 1.69990 1.06084 1.27149 1.49072 1.24950 0.94918 0.99413 0.94790 0.86353 0.79795 0.82972 0.77721 1.19675 1.20818 1.20818 1.21268 0.93310 0.90424 1.52949 0.91894 1.19000 0.87780 0.81036 0.97666 1.45712 1.10842 1.04311 1.77101 1.16100 0.85080 0.80998 0.78372 1.90879 1.14147 1.84172 1.58650 1.45113 1.08980 1.04326 1.82761 1.19822 0.91708 0.78815 1.03840 1.19915 0.98985 1.00286 0.91714 1.21034 0.96186 0.96267 0.98991 1.17638 0.96539 0.96918 0.82216 1.91534 1.90197 1.82565 1.47030 1.21032 1.00996 1.01270 0.90670 1.21020 0.96740 0.97368 0.99543 1.17616 0.95770 0.95775 0.81992 1.91577 1.89980 1.82357 1.46421 0.92522 0.95686 0.95674 0.78128 0.77481 0.90256 0.90164 0.83265 0.83639 0.83464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 9 C 0.27 7.20 5.43 -5.20 -0.03 7.17 16 10 N -0.73 -15.76 5.55 -66.42 -0.37 -16.13 16 11 C 0.69 14.47 8.57 -86.92 -0.74 13.73 16 12 O -0.60 -15.06 16.34 5.29 0.09 -14.97 16 13 N -0.75 -11.39 5.55 -66.41 -0.37 -11.76 16 14 C 0.18 2.36 5.52 -5.19 -0.03 2.33 16 15 C -0.11 -1.08 5.25 -104.56 -0.55 -1.63 16 16 C -0.11 -0.93 9.65 -39.52 -0.38 -1.31 16 17 C 0.09 0.73 7.30 -39.43 -0.29 0.44 16 18 F -0.13 -1.25 17.27 2.25 0.04 -1.21 16 19 C -0.12 -0.83 10.02 -39.53 -0.40 -1.23 16 20 C -0.13 -0.94 10.02 -39.52 -0.40 -1.33 16 21 C 0.11 1.06 7.24 -39.43 -0.29 0.78 16 22 F -0.13 -1.48 16.66 2.25 0.04 -1.44 16 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.39 7.17 8.34 -40.82 -0.34 6.83 16 27 H 0.39 4.92 8.48 -40.82 -0.35 4.57 16 28 H 0.08 1.12 7.94 -51.93 -0.41 0.71 16 29 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16 30 H 0.15 1.17 8.03 -52.49 -0.42 0.75 16 31 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 32 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 298.36 15.07 4.50 4.50 Total: -1.00 -33.13 298.36 -7.04 -40.16 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -3.16 Total: 5.01 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -3.51 Total: 5.44 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.00 Total: -53.45 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.09 Total: -14.97 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.08 Total: -2.65 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.13 -7.04 -40.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426428636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.141 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds