Wall clock time and date at job start Mon Mar 30 2020 01:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00065 * 2 1 4 4 H 1.48504 * 109.47390 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47183 * 299.99842 * 3 2 1 6 6 H 1.48496 * 109.47130 * 59.99886 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00455 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47426 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00211 * 179.97438 * 10 9 7 12 12 O 1.21586 * 120.00048 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99940 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47148 * 179.72251 * 14 13 11 16 16 C 1.38208 * 120.00036 * 259.72086 * 15 14 13 17 17 C 1.38428 * 119.99897 * 179.77046 * 16 15 14 18 18 F 1.35106 * 119.99725 * 180.27389 * 17 16 15 19 19 C 1.38463 * 119.99986 * 0.52999 * 17 16 15 20 20 C 1.38165 * 120.00379 * 359.72394 * 19 17 16 21 21 C 1.38428 * 120.00231 * 80.00018 * 15 14 13 22 22 F 1.35106 * 119.99820 * 359.97390 * 21 15 14 23 23 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47083 * 59.99434 * 9 7 2 25 25 H 1.09001 * 109.46875 * 299.99697 * 9 7 2 26 26 H 0.97004 * 119.99747 * 0.02562 * 10 9 7 27 27 H 0.97005 * 120.00161 * 359.72198 * 13 11 10 28 28 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 29 29 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 30 30 H 1.08000 * 119.99461 * 0.02562 * 16 15 14 31 31 H 1.08006 * 120.00133 * 179.70461 * 19 17 16 32 32 H 1.07992 * 120.00134 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5584 -5.1056 0.0011 13 7 2.6296 -5.9078 0.0016 14 6 2.1413 -7.2891 0.0016 15 6 3.3134 -8.2362 -0.0047 16 6 3.7118 -8.8349 -1.1849 17 6 4.7914 -9.7013 -1.1915 18 9 5.1842 -10.2823 -2.3463 19 6 5.4653 -9.9766 -0.0137 20 6 5.0639 -9.3821 1.1672 21 6 3.9875 -8.5111 1.1727 22 9 3.5949 -7.9298 2.3274 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5568 0.8903 26 1 3.1567 -3.4355 0.0009 27 1 3.5833 -5.7305 -0.0025 28 1 1.5394 -7.4615 0.8938 29 1 1.5320 -7.4590 -0.8861 30 1 3.1832 -8.6236 -2.1027 31 1 6.3047 -10.6562 -0.0179 32 1 5.5893 -9.5972 2.0858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426428636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:49 Heat of formation + Delta-G solvation = -124.803457 kcal Electronic energy + Delta-G solvation = -19393.369218 eV Core-core repulsion = 15795.762561 eV Total energy + Delta-G solvation = -3597.606658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.00314 -49.94944 -41.00965 -39.90180 -36.42961 -35.82396 -34.36744 -32.64060 -31.09783 -29.34812 -27.19242 -24.60871 -24.04239 -22.78453 -21.92953 -19.95336 -18.76290 -18.37804 -18.28855 -17.88364 -17.38994 -16.88386 -16.51952 -16.44792 -16.31914 -15.53245 -15.41081 -15.15493 -14.94458 -14.74426 -14.22971 -14.05103 -13.90303 -13.71256 -13.32717 -12.96234 -12.85836 -12.73781 -12.21128 -12.05988 -11.44291 -11.35250 -10.81143 -10.35679 -10.27542 -9.65075 -9.60477 -8.27717 -6.44010 -0.21785 -0.06080 1.44398 1.45971 1.59114 1.83104 2.21144 2.34111 2.43377 3.04297 3.07389 3.11442 3.37218 3.55231 3.59030 3.95422 4.05146 4.33762 4.51847 4.68107 4.90391 4.95650 4.98482 5.06900 5.09006 5.27956 5.39510 5.49315 5.65785 5.70795 5.85513 6.20656 6.67747 7.23818 7.27805 7.68422 8.84933 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.003301 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.957770 B = 8479.286781 C = 8559.909481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.284 3.716 10 N -0.722 5.722 11 C 0.694 3.306 12 O -0.646 6.646 13 N -0.729 5.729 14 C 0.182 3.818 15 C -0.115 4.115 16 C -0.105 4.105 17 C 0.080 3.920 18 F -0.139 7.139 19 C -0.104 4.104 20 C -0.117 4.117 21 C 0.094 3.906 22 F -0.141 7.141 23 H 0.269 0.731 24 H -0.012 1.012 25 H -0.014 1.014 26 H 0.405 0.595 27 H 0.409 0.591 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.177 0.823 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.765 -21.109 0.074 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.375 5.375 11 C 0.393 3.607 12 O -0.529 6.529 13 N -0.387 5.387 14 C 0.058 3.942 15 C -0.116 4.116 16 C -0.124 4.124 17 C 0.061 3.939 18 F -0.118 7.118 19 C -0.123 4.123 20 C -0.135 4.135 21 C 0.074 3.926 22 F -0.120 7.120 23 H 0.078 0.922 24 H 0.005 0.995 25 H 0.004 0.996 26 H 0.240 0.760 27 H 0.244 0.756 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.173 0.827 31 H 0.194 0.806 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 14.509 -21.184 0.077 25.676 hybrid contribution 0.399 1.060 -0.011 1.133 sum 14.908 -20.124 0.066 25.045 Atomic orbital electron populations 1.70149 1.08265 1.28515 1.50016 1.26070 0.95796 1.03878 0.93884 0.85080 0.79021 0.77225 0.77672 1.17685 1.20406 1.20473 1.21631 0.94315 0.90457 1.52801 0.89845 1.18437 0.88101 0.83274 0.94072 1.45300 1.10948 1.03751 1.77549 1.16245 0.84998 0.81523 0.77894 1.90845 1.16569 1.84899 1.60570 1.44889 1.09054 1.04061 1.80681 1.19864 0.93186 0.77924 1.03184 1.19548 0.98671 1.00756 0.92647 1.21054 0.96456 0.96200 0.98703 1.17763 0.96603 0.96916 0.82651 1.91530 1.90196 1.82612 1.47440 1.21371 1.00915 1.00458 0.89530 1.21282 0.95537 0.95895 1.00821 1.17884 0.96794 0.96713 0.81232 1.91540 1.90324 1.82845 1.47257 0.92230 0.99452 0.99609 0.76019 0.75551 0.91690 0.90158 0.82719 0.80588 0.80836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.99 42.57 29.54 68.60 2.03 44.60 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -30.51 9.28 25.60 0.24 -30.28 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.28 16.00 5.43 85.63 0.46 16.46 16 10 N -0.72 -31.78 5.55 -482.31 -2.68 -34.46 16 11 C 0.69 29.57 8.57 179.06 1.53 31.10 16 12 O -0.65 -33.91 16.34 -3.99 -0.07 -33.97 16 13 N -0.73 -21.91 5.55 -482.30 -2.68 -24.59 16 14 C 0.18 4.74 5.52 85.63 0.47 5.22 16 15 C -0.11 -2.19 5.25 -19.83 -0.10 -2.29 16 16 C -0.10 -1.69 9.65 22.31 0.22 -1.47 16 17 C 0.08 1.14 7.30 22.37 0.16 1.31 16 18 F -0.14 -2.25 17.27 44.97 0.78 -1.47 16 19 C -0.10 -1.05 10.02 22.31 0.22 -0.82 16 20 C -0.12 -1.34 10.02 22.31 0.22 -1.11 16 21 C 0.09 1.68 7.24 22.37 0.16 1.84 16 22 F -0.14 -3.21 16.66 44.97 0.75 -2.46 16 23 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 24 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 25 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H 0.40 14.70 8.34 -92.71 -0.77 13.93 16 27 H 0.41 9.74 8.48 -92.70 -0.79 8.95 16 28 H 0.06 1.90 7.94 -2.39 -0.02 1.88 16 29 H 0.08 2.10 8.00 -2.39 -0.02 2.08 16 30 H 0.16 2.24 8.03 -2.91 -0.02 2.22 16 31 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -74.11 298.36 2.09 -72.01 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.38 Total: 16.09 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 4.05 Total: 20.60 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -5.07 Total: -115.38 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.07 Total: -33.97 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 1.53 Total: -3.94 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -74.11 2.09 -72.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426428636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.789 kcal (2) G-P(sol) polarization free energy of solvation -74.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds