Wall clock time and date at job start Mon Mar 30 2020 01:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48496 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47188 * 299.99622 * 3 2 1 6 6 H 1.48497 * 109.47104 * 59.99725 * 3 2 1 7 7 C 1.37875 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38258 * 119.96346 * 269.71469 * 15 14 13 17 17 C 1.38213 * 120.07274 * 179.76659 * 16 15 14 18 18 C 1.38418 * 119.99722 * 0.51849 * 17 16 15 19 19 F 1.35096 * 120.03553 * 179.72266 * 18 17 16 20 20 C 1.38647 * 119.92654 * 359.74374 * 18 17 16 21 21 F 1.35102 * 120.03601 * 180.02562 * 20 18 17 22 22 C 1.38207 * 119.96526 * 90.00218 * 15 14 13 23 23 H 0.96997 * 119.99506 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 25 25 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 26 26 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 27 27 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 28 28 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 29 29 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 30 30 H 1.08005 * 119.96332 * 0.03250 * 16 15 14 31 31 H 1.07999 * 120.00045 * 180.25862 * 17 16 15 32 32 H 1.08000 * 120.00503 * 359.95289 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5581 -5.1056 0.0011 13 7 2.6294 -5.9079 0.0016 14 6 2.1410 -7.2890 -0.0040 15 6 3.3131 -8.2362 -0.0090 16 6 3.8455 -8.6697 -1.2091 17 6 4.9235 -9.5346 -1.2164 18 6 5.4645 -9.9762 -0.0212 19 9 6.5146 -10.8260 -0.0274 20 6 4.9271 -9.5458 1.1822 21 9 5.4537 -9.9750 2.3500 22 6 3.8509 -8.6753 1.1860 23 1 -0.4849 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 3.1566 -3.4356 0.0009 27 1 3.5831 -5.7306 0.0012 28 1 1.5361 -7.4641 0.8857 29 1 1.5347 -7.4565 -0.8942 30 1 3.4212 -8.3287 -2.1420 31 1 5.3411 -9.8692 -2.1545 32 1 3.4317 -8.3391 2.1228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426442400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:40 Heat of formation + Delta-G solvation = -124.670806 kcal Electronic energy + Delta-G solvation = -19142.584709 eV Core-core repulsion = 15544.983803 eV Total energy + Delta-G solvation = -3597.600906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.54713 -49.63115 -41.01340 -39.99965 -36.31676 -35.68565 -34.31823 -32.22848 -31.72680 -29.25520 -26.91430 -24.54991 -24.26689 -22.73841 -21.84901 -19.88941 -19.02046 -18.28069 -18.22870 -17.77321 -17.42517 -17.25453 -16.47160 -16.42986 -16.05225 -15.65681 -15.51155 -15.11523 -14.94773 -14.78043 -14.52146 -14.01219 -13.95498 -13.28596 -13.17881 -12.88233 -12.82227 -12.72681 -12.27572 -12.19506 -11.41717 -11.27583 -10.79072 -10.26597 -10.13517 -9.79069 -9.55740 -8.26176 -6.41963 -0.26849 -0.04445 1.45775 1.46761 1.59912 1.86025 2.28372 2.36536 2.47400 2.71967 3.09194 3.23515 3.41568 3.58634 3.63946 3.95730 4.07160 4.39554 4.64548 4.73546 4.81243 4.87182 4.99275 5.12689 5.31356 5.33169 5.49155 5.52829 5.66928 5.71079 5.88678 6.28110 6.70471 7.27473 7.33806 7.75621 8.86298 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033688 B = 0.003013 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.961666 B = 9291.103659 C = 9546.074461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.693 3.307 12 O -0.647 6.647 13 N -0.729 5.729 14 C 0.181 3.819 15 C -0.080 4.080 16 C -0.068 4.068 17 C -0.116 4.116 18 C 0.060 3.940 19 F -0.138 7.138 20 C 0.047 3.953 21 F -0.141 7.141 22 C -0.103 4.103 23 H 0.268 0.732 24 H -0.012 1.012 25 H -0.014 1.014 26 H 0.405 0.595 27 H 0.410 0.590 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.167 0.833 31 H 0.175 0.825 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.209 -19.288 -2.121 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.591 4.591 8 H 0.101 0.899 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.393 3.607 12 O -0.529 6.529 13 N -0.387 5.387 14 C 0.058 3.942 15 C -0.081 4.081 16 C -0.086 4.086 17 C -0.134 4.134 18 C 0.040 3.960 19 F -0.117 7.117 20 C 0.027 3.973 21 F -0.120 7.120 22 C -0.122 4.122 23 H 0.077 0.923 24 H 0.005 0.995 25 H 0.004 0.996 26 H 0.240 0.760 27 H 0.246 0.754 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.184 0.816 31 H 0.192 0.808 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.024 -19.421 -2.067 22.935 hybrid contribution 0.996 0.670 0.508 1.304 sum 13.021 -18.751 -1.559 22.882 Atomic orbital electron populations 1.70147 1.08218 1.28446 1.50126 1.26040 0.95766 1.03796 0.93984 0.85114 0.79070 0.77424 0.77607 1.17697 1.20485 1.20604 1.21645 0.94320 0.90542 1.52606 0.89860 1.18410 0.88100 0.83291 0.94062 1.45301 1.10900 1.03872 1.77628 1.16266 0.85046 0.81508 0.77920 1.90856 1.16625 1.84895 1.60555 1.44922 1.09089 1.04083 1.80625 1.20003 0.93030 0.77536 1.03631 1.19652 0.97266 0.98357 0.92826 1.21361 0.93897 0.94463 0.98909 1.21374 0.96904 0.98144 0.96983 1.18041 0.88799 0.94980 0.94189 1.91513 1.54647 1.68213 1.97339 1.17841 0.97716 1.01335 0.80392 1.91509 1.85775 1.88608 1.46079 1.21126 0.94265 0.96076 1.00766 0.92282 0.99450 0.99620 0.76020 0.75372 0.91092 0.90034 0.81568 0.80770 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.98 41.84 29.54 68.60 2.03 43.86 16 4 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -29.68 9.28 25.60 0.24 -29.44 16 8 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.28 15.46 5.43 85.63 0.46 15.93 16 10 N -0.72 -29.93 5.55 -482.28 -2.68 -32.61 16 11 C 0.69 27.08 8.57 179.05 1.53 28.62 16 12 O -0.65 -31.79 16.34 -4.01 -0.07 -31.85 16 13 N -0.73 -18.55 5.55 -482.30 -2.68 -21.23 16 14 C 0.18 3.75 5.80 85.63 0.50 4.24 16 15 C -0.08 -1.20 5.25 -19.87 -0.10 -1.30 16 16 C -0.07 -0.76 9.69 22.27 0.22 -0.55 16 17 C -0.12 -1.31 10.02 22.31 0.22 -1.08 16 18 C 0.06 1.01 7.31 22.41 0.16 1.17 16 19 F -0.14 -2.70 17.18 44.97 0.77 -1.93 16 20 C 0.05 0.87 7.31 22.41 0.16 1.03 16 21 F -0.14 -3.09 17.18 44.97 0.77 -2.31 16 22 C -0.10 -1.66 9.68 22.31 0.22 -1.44 16 23 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 24 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 25 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 26 H 0.40 13.68 8.34 -92.71 -0.77 12.90 16 27 H 0.41 7.91 8.48 -92.71 -0.79 7.13 16 28 H 0.07 1.60 8.08 -2.38 -0.02 1.58 16 29 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 30 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 31 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -72.65 299.09 2.13 -70.52 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -0.38 Total: 13.06 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 4.07 Total: 17.85 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -5.07 Total: -109.20 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.07 Total: -31.85 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 1.55 Total: -4.25 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -72.65 2.13 -70.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426442400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.148 kcal (2) G-P(sol) polarization free energy of solvation -72.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds