Wall clock time and date at job start Mon Mar 30 2020 00:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29418 * 125.69605 * 2 1 4 4 N 1.26402 * 116.47198 * 179.68369 * 3 2 1 5 5 C 1.29412 * 116.47769 * 0.52791 * 4 3 2 6 6 C 1.50698 * 125.69644 * 179.77536 * 5 4 3 7 7 H 1.09008 * 109.46853 * 194.69594 * 6 5 4 8 8 C 1.52996 * 109.47387 * 74.69465 * 6 5 4 9 9 N 1.46500 * 109.47318 * 314.69212 * 6 5 4 10 10 C 1.34773 * 120.00431 * 205.00474 * 9 6 5 11 11 O 1.21593 * 119.99894 * 359.97438 * 10 9 6 12 12 N 1.34777 * 120.00097 * 179.72742 * 10 9 6 13 13 C 1.46504 * 119.99854 * 180.27545 * 12 10 9 14 14 C 1.50701 * 109.46923 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00027 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00263 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00327 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46954 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47242 * 120.00258 * 18 16 14 21 21 H 1.48494 * 109.47552 * 240.00390 * 18 16 14 22 22 S 1.71218 * 125.69753 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.46940 * 270.04234 * 1 2 3 24 24 H 1.09000 * 109.46730 * 30.04168 * 1 2 3 25 25 H 1.08998 * 109.46836 * 150.03874 * 1 2 3 26 26 H 1.09004 * 109.47132 * 179.97438 * 8 6 5 27 27 H 1.08994 * 109.47099 * 300.00014 * 8 6 5 28 28 H 1.09003 * 109.47061 * 60.00007 * 8 6 5 29 29 H 0.97000 * 119.99456 * 25.00037 * 9 6 5 30 30 H 0.97000 * 119.99736 * 0.26819 * 12 10 9 31 31 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 32 32 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 33 33 H 0.96994 * 120.00789 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8484 0.0062 5 6 3.8937 -0.3874 0.0013 6 6 5.3233 -0.8641 0.0022 7 1 5.3540 -1.9209 -0.2634 8 6 5.9245 -0.6708 1.3957 9 7 6.0960 -0.0925 -0.9744 10 6 7.2083 -0.6205 -1.5224 11 8 7.5708 -1.7371 -1.2059 12 7 7.9162 0.0873 -2.4249 13 6 9.1219 -0.4890 -3.0251 14 6 9.7215 0.4974 -3.9939 15 1 9.2512 1.4574 -4.1475 16 6 10.8704 0.1743 -4.6841 17 7 11.4429 -0.9949 -4.4975 18 14 11.6140 1.3972 -5.8845 19 1 10.7859 2.6297 -5.9122 20 1 12.9936 1.7380 -5.4531 21 1 11.6540 0.7967 -7.2420 22 16 2.5060 -1.3905 0.0006 23 1 -0.3633 0.0008 1.0276 24 1 -0.3633 0.8896 -0.5145 25 1 -0.3633 -0.8903 -0.5132 26 1 6.9584 -1.0161 1.3965 27 1 5.8937 0.3858 1.6613 28 1 5.3495 -1.2450 2.1223 29 1 5.8070 0.7984 -1.2266 30 1 7.6271 0.9783 -2.6771 31 1 9.8453 -0.7149 -2.2417 32 1 8.8618 -1.4055 -3.5546 33 1 12.2514 -1.2221 -4.9828 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426443528.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:04 Heat of formation + Delta-G solvation = 24.817310 kcal Electronic energy + Delta-G solvation = -17699.212578 eV Core-core repulsion = 14694.227101 eV Total energy + Delta-G solvation = -3004.985477 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.58791 -39.34845 -35.96010 -34.07802 -33.07613 -32.35833 -30.67893 -28.60997 -26.97752 -25.77071 -23.49499 -22.35612 -20.46331 -19.75905 -19.33915 -18.15790 -16.57815 -16.11234 -15.81717 -15.05860 -14.81446 -14.59148 -14.29397 -13.76821 -13.62427 -13.47313 -13.13366 -12.95187 -12.85760 -12.15454 -11.95789 -11.85158 -11.52903 -10.91898 -10.89834 -10.71711 -10.47589 -10.29225 -10.00036 -9.91165 -9.45437 -9.33909 -8.89750 -8.70255 -7.78447 -6.14232 -4.20477 0.12071 0.57484 1.06462 2.28045 3.25631 3.29234 3.33874 3.38967 3.60235 3.88958 4.18756 4.34638 4.55356 4.81474 4.95100 5.05028 5.13541 5.18399 5.22161 5.26710 5.44152 5.62077 5.83740 6.17957 6.71558 7.09858 7.49977 7.55927 7.57543 7.89913 8.04357 8.29029 8.76988 8.91999 9.29991 9.47894 10.96063 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.036046 B = 0.003426 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.604812 B = 8170.869314 C = 8544.679578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.025 4.025 3 N -0.260 5.260 4 N -0.250 5.250 5 C -0.022 4.022 6 C 0.250 3.750 7 H 0.109 0.891 8 C -0.157 4.157 9 N -0.747 5.747 10 C 0.697 3.303 11 O -0.600 6.600 12 N -0.726 5.726 13 C 0.267 3.733 14 C -0.541 4.541 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 S 0.187 5.813 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.400 0.600 30 H 0.388 0.612 31 H 0.026 0.974 32 H 0.025 0.975 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.479 -0.040 10.446 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.303 4.303 3 N -0.099 5.099 4 N -0.087 5.087 5 C -0.302 4.302 6 C 0.139 3.861 7 H 0.127 0.873 8 C -0.217 4.217 9 N -0.405 5.405 10 C 0.396 3.604 11 O -0.479 6.479 12 N -0.378 5.378 13 C 0.146 3.854 14 C -0.579 4.579 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 S 0.431 5.569 23 H 0.109 0.891 24 H 0.113 0.887 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.234 0.766 30 H 0.220 0.780 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.884 -0.848 10.632 23.450 hybrid contribution 0.206 1.562 -0.915 1.822 sum -20.678 0.714 9.716 22.858 Atomic orbital electron populations 1.20380 0.83870 1.04791 1.04332 1.29285 1.04401 0.92092 1.04566 1.71470 0.96868 1.26778 1.14757 1.71372 1.06436 1.16872 1.14030 1.29458 1.03286 0.92972 1.04447 1.19019 0.79722 0.96644 0.90708 0.87279 1.22221 1.02627 1.02935 0.93953 1.45137 1.27922 1.20366 1.47110 1.16081 0.79718 0.84702 0.79886 1.90872 1.71164 1.19252 1.66604 1.45730 1.29539 1.19254 1.43238 1.19011 0.79657 0.94208 0.92547 1.21270 1.10361 1.01959 1.24359 0.91861 1.24939 0.96541 0.95573 0.96976 1.69985 1.19926 1.20721 1.41702 0.86358 0.79052 0.80921 0.80554 1.19642 1.20807 1.20829 1.83754 0.97034 1.11325 1.64813 0.89102 0.88749 0.89646 0.89953 0.91584 0.91778 0.76584 0.77981 0.95602 0.95665 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.48 36.00 0.38 0.00 16 2 C -0.02 -0.24 7.53 -13.30 -0.10 -0.34 16 3 N -0.26 -3.38 11.66 32.58 0.38 -3.00 16 4 N -0.25 -3.46 11.33 32.58 0.37 -3.09 16 5 C -0.02 -0.27 6.33 -13.30 -0.08 -0.36 16 6 C 0.25 3.38 3.09 -69.09 -0.21 3.17 16 7 H 0.11 1.52 7.58 -51.92 -0.39 1.13 16 8 C -0.16 -1.93 9.47 37.16 0.35 -1.58 16 9 N -0.75 -11.88 5.07 -59.81 -0.30 -12.18 16 10 C 0.70 14.39 8.53 -86.92 -0.74 13.65 16 11 O -0.60 -14.50 16.01 5.28 0.08 -14.41 16 12 N -0.73 -15.80 5.55 -66.41 -0.37 -16.17 16 13 C 0.27 7.17 5.43 -5.19 -0.03 7.14 16 14 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 15 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 18 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 S 0.19 1.68 23.04 -107.50 -2.48 -0.80 16 23 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.40 5.83 8.35 -40.82 -0.34 5.49 16 30 H 0.39 7.39 8.34 -40.82 -0.34 7.05 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -33.76 307.71 -6.81 -40.57 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -3.99 Total: 5.72 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.86 Total: 8.17 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.81 Total: -59.94 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.41 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.48 Total: -0.80 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.76 -6.81 -40.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426443528.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.390 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds