Wall clock time and date at job start Mon Mar 30 2020 00:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29418 * 125.69605 * 2 1 4 4 N 1.26402 * 116.47198 * 179.68369 * 3 2 1 5 5 C 1.29412 * 116.47769 * 0.52791 * 4 3 2 6 6 C 1.50698 * 125.69644 * 179.77536 * 5 4 3 7 7 H 1.09008 * 109.46853 * 194.69594 * 6 5 4 8 8 C 1.52996 * 109.47387 * 74.69465 * 6 5 4 9 9 N 1.46500 * 109.47318 * 314.69212 * 6 5 4 10 10 C 1.34773 * 120.00431 * 205.00474 * 9 6 5 11 11 O 1.21593 * 119.99894 * 359.97438 * 10 9 6 12 12 N 1.34777 * 120.00097 * 179.72742 * 10 9 6 13 13 C 1.46504 * 119.99854 * 180.27545 * 12 10 9 14 14 C 1.50701 * 109.46923 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00027 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00263 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00327 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46954 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47242 * 120.00258 * 18 16 14 21 21 H 1.48494 * 109.47552 * 240.00390 * 18 16 14 22 22 S 1.71218 * 125.69753 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.46940 * 270.04234 * 1 2 3 24 24 H 1.09000 * 109.46730 * 30.04168 * 1 2 3 25 25 H 1.08998 * 109.46836 * 150.03874 * 1 2 3 26 26 H 1.09004 * 109.47132 * 179.97438 * 8 6 5 27 27 H 1.08994 * 109.47099 * 300.00014 * 8 6 5 28 28 H 1.09003 * 109.47061 * 60.00007 * 8 6 5 29 29 H 0.97000 * 119.99456 * 25.00037 * 9 6 5 30 30 H 0.97000 * 119.99736 * 0.26819 * 12 10 9 31 31 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 32 32 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 33 33 H 0.96994 * 120.00789 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8484 0.0062 5 6 3.8937 -0.3874 0.0013 6 6 5.3233 -0.8641 0.0022 7 1 5.3540 -1.9209 -0.2634 8 6 5.9245 -0.6708 1.3957 9 7 6.0960 -0.0925 -0.9744 10 6 7.2083 -0.6205 -1.5224 11 8 7.5708 -1.7371 -1.2059 12 7 7.9162 0.0873 -2.4249 13 6 9.1219 -0.4890 -3.0251 14 6 9.7215 0.4974 -3.9939 15 1 9.2512 1.4574 -4.1475 16 6 10.8704 0.1743 -4.6841 17 7 11.4429 -0.9949 -4.4975 18 14 11.6140 1.3972 -5.8845 19 1 10.7859 2.6297 -5.9122 20 1 12.9936 1.7380 -5.4531 21 1 11.6540 0.7967 -7.2420 22 16 2.5060 -1.3905 0.0006 23 1 -0.3633 0.0008 1.0276 24 1 -0.3633 0.8896 -0.5145 25 1 -0.3633 -0.8903 -0.5132 26 1 6.9584 -1.0161 1.3965 27 1 5.8937 0.3858 1.6613 28 1 5.3495 -1.2450 2.1223 29 1 5.8070 0.7984 -1.2266 30 1 7.6271 0.9783 -2.6771 31 1 9.8453 -0.7149 -2.2417 32 1 8.8618 -1.4055 -3.5546 33 1 12.2514 -1.2221 -4.9828 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426443528.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:03 Heat of formation + Delta-G solvation = -1.748983 kcal Electronic energy + Delta-G solvation = -17700.364579 eV Core-core repulsion = 14694.227101 eV Total energy + Delta-G solvation = -3006.137478 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.47611 -40.97547 -37.29509 -36.01083 -34.45430 -33.82867 -31.95646 -29.45663 -28.96731 -26.58227 -25.04308 -23.86836 -22.03232 -20.72924 -20.43635 -19.73099 -18.18586 -17.55823 -16.98157 -16.65267 -16.34238 -16.20619 -15.27158 -15.20279 -14.75947 -14.52885 -14.24582 -14.03537 -13.96248 -13.64712 -13.46265 -13.14813 -12.86526 -12.75555 -12.58895 -12.22302 -11.59124 -11.44612 -11.35775 -11.22694 -10.83089 -10.81029 -10.66757 -10.36582 -9.67284 -8.28262 -6.44118 -0.68828 -0.20548 0.26083 1.38487 1.43901 1.44800 1.58121 1.86376 2.17587 2.39554 2.75246 3.06764 3.44239 3.48812 3.70652 4.04121 4.08703 4.28999 4.60799 4.63421 4.71349 4.76659 5.07800 5.08104 5.14106 5.28634 5.37802 5.48575 5.64206 5.85089 6.16582 6.67172 7.19968 7.26032 7.44185 7.64959 8.84170 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.036046 B = 0.003426 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.604812 B = 8170.869314 C = 8544.679578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.018 4.018 3 N -0.299 5.299 4 N -0.272 5.272 5 C -0.050 4.050 6 C 0.247 3.753 7 H 0.105 0.895 8 C -0.151 4.151 9 N -0.728 5.728 10 C 0.699 3.301 11 O -0.637 6.637 12 N -0.723 5.723 13 C 0.286 3.714 14 C -0.555 4.555 15 H 0.080 0.920 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.984 3.016 19 H -0.256 1.256 20 H -0.278 1.278 21 H -0.278 1.278 22 S 0.251 5.749 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.409 0.591 30 H 0.403 0.597 31 H -0.010 1.010 32 H -0.010 1.010 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.562 0.907 10.297 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.296 4.296 3 N -0.138 5.138 4 N -0.110 5.110 5 C -0.330 4.330 6 C 0.138 3.862 7 H 0.122 0.878 8 C -0.211 4.211 9 N -0.386 5.386 10 C 0.398 3.602 11 O -0.519 6.519 12 N -0.376 5.376 13 C 0.163 3.837 14 C -0.593 4.593 15 H 0.098 0.902 16 C -0.194 4.194 17 N -0.567 5.567 18 Si 0.808 3.192 19 H -0.180 1.180 20 H -0.204 1.204 21 H -0.203 1.203 22 S 0.495 5.505 23 H 0.130 0.870 24 H 0.116 0.884 25 H 0.128 0.872 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.245 0.755 30 H 0.238 0.762 31 H 0.008 0.992 32 H 0.007 0.993 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.038 0.134 10.513 25.324 hybrid contribution 0.683 1.182 -0.792 1.578 sum -22.355 1.316 9.721 24.413 Atomic orbital electron populations 1.20675 0.80841 1.06166 1.06019 1.30026 1.06179 0.91751 1.01662 1.71459 0.96826 1.28331 1.17166 1.71338 1.07402 1.17886 1.14401 1.29135 1.03540 0.93881 1.06395 1.19115 0.80671 0.96000 0.90439 0.87754 1.22151 1.01667 1.03289 0.93996 1.44955 1.26356 1.20718 1.46580 1.16131 0.80448 0.84068 0.79515 1.90843 1.72376 1.20983 1.67701 1.45355 1.28612 1.19960 1.43701 1.18445 0.80602 0.93366 0.91293 1.21623 1.10796 1.02532 1.24379 0.90154 1.26017 0.96943 0.97556 0.98900 1.70133 1.20573 1.23032 1.43005 0.85118 0.78086 0.78491 0.77545 1.17972 1.20364 1.20335 1.83515 0.94332 1.09345 1.63261 0.87049 0.88432 0.87167 0.92139 0.91631 0.88957 0.75547 0.76221 0.99240 0.99250 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.48 71.24 0.75 0.21 16 2 C -0.02 -0.30 7.53 88.46 0.67 0.37 16 3 N -0.30 -7.37 11.66 -50.85 -0.59 -7.96 16 4 N -0.27 -7.30 11.33 -50.85 -0.58 -7.87 16 5 C -0.05 -1.17 6.33 88.46 0.56 -0.61 16 6 C 0.25 6.62 3.09 44.24 0.14 6.76 16 7 H 0.10 2.90 7.58 -2.38 -0.02 2.88 16 8 C -0.15 -3.67 9.47 71.98 0.68 -2.99 16 9 N -0.73 -23.26 5.07 -461.41 -2.34 -25.60 16 10 C 0.70 29.58 8.53 179.06 1.53 31.11 16 11 O -0.64 -31.94 16.01 -4.01 -0.06 -32.01 16 12 N -0.72 -32.19 5.55 -482.29 -2.68 -34.87 16 13 C 0.29 16.00 5.43 85.63 0.46 16.46 16 14 C -0.56 -30.77 9.28 25.60 0.24 -30.53 16 15 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 16 C 0.01 0.31 5.46 84.65 0.46 0.77 16 17 N -0.93 -56.22 13.29 21.44 0.28 -55.93 16 18 Si 0.98 42.92 29.54 68.60 2.03 44.95 16 19 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 S 0.25 3.91 23.04 -56.49 -1.30 2.61 16 23 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.41 11.81 8.35 -92.71 -0.77 11.03 16 30 H 0.40 15.33 8.34 -92.71 -0.77 14.56 16 31 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -75.20 307.71 -0.15 -75.35 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -0.39 Total: 19.79 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 5.48 Total: 21.54 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -5.90 Total: -132.23 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.06 Total: -32.01 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.30 Total: 2.61 kcal Total: -75.20 -0.15 -75.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426443528.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.599 kcal (2) G-P(sol) polarization free energy of solvation -75.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds