Wall clock time and date at job start Mon Mar 30 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29419 * 125.69230 * 2 1 4 4 N 1.26397 * 116.47207 * 180.02562 * 3 2 1 5 5 C 1.29421 * 116.47725 * 359.97438 * 4 3 2 6 6 C 1.50691 * 125.69486 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47186 * 165.02644 * 6 5 4 8 8 C 1.53008 * 109.47321 * 285.02552 * 6 5 4 9 9 N 1.46500 * 109.47568 * 45.02598 * 6 5 4 10 10 C 1.34773 * 120.00431 * 155.00128 * 9 6 5 11 11 O 1.21593 * 119.99894 * 359.97438 * 10 9 6 12 12 N 1.34777 * 120.00097 * 179.72742 * 10 9 6 13 13 C 1.46504 * 119.99854 * 180.27545 * 12 10 9 14 14 C 1.50701 * 109.46923 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00027 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00241 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 119.99866 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46710 * 90.00048 * 18 16 14 20 20 H 1.48500 * 109.46865 * 209.99357 * 18 16 14 21 21 H 1.48491 * 109.47392 * 329.99819 * 18 16 14 22 22 S 1.71216 * 125.69585 * 180.30060 * 2 1 3 23 23 H 1.09004 * 109.47269 * 89.98173 * 1 2 3 24 24 H 1.09006 * 109.47386 * 209.97506 * 1 2 3 25 25 H 1.09001 * 109.47930 * 329.98019 * 1 2 3 26 26 H 1.09004 * 109.46414 * 300.00066 * 8 6 5 27 27 H 1.08994 * 109.47203 * 59.99943 * 8 6 5 28 28 H 1.08991 * 109.47246 * 180.02562 * 8 6 5 29 29 H 0.97000 * 119.99456 * 334.99690 * 9 6 5 30 30 H 0.97000 * 119.99736 * 0.26819 * 12 10 9 31 31 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 32 32 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 33 33 H 0.97003 * 119.99905 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0511 0.0000 4 7 3.5097 0.8486 -0.0005 5 6 3.8936 -0.3874 -0.0004 6 6 5.3232 -0.8640 -0.0015 7 1 5.3541 -1.9206 0.2643 8 6 5.9242 -0.6710 -1.3953 9 7 6.0962 -0.0921 0.9746 10 6 7.2087 -0.6198 1.5225 11 8 7.5707 -1.7369 1.2068 12 7 7.9228 0.0925 2.4164 13 6 9.1355 -0.4788 3.0073 14 6 9.7419 0.5125 3.9668 15 1 9.2713 1.4723 4.1206 16 6 10.8974 0.1942 4.6481 17 7 11.4264 1.0592 5.4858 18 14 11.7118 -1.4657 4.3814 19 1 12.6908 -1.3637 3.2694 20 1 12.4144 -1.8775 5.6232 21 1 10.6778 -2.4752 4.0396 22 16 2.5060 -1.3905 -0.0073 23 1 -0.3634 0.0003 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3635 0.8898 0.5141 26 1 5.3491 -1.2454 -2.1216 27 1 5.8933 0.3856 -1.6612 28 1 6.9580 -1.0161 -1.3962 29 1 5.8072 0.7989 1.2266 30 1 7.6338 0.9835 2.6684 31 1 8.8825 -1.3944 3.5420 32 1 9.8523 -0.7053 2.2181 33 1 12.2392 0.8350 5.9654 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426443537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:06 Heat of formation + Delta-G solvation = 28.616790 kcal Electronic energy + Delta-G solvation = -17749.201911 eV Core-core repulsion = 14744.381192 eV Total energy + Delta-G solvation = -3004.820719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.62622 -39.49327 -36.06989 -34.19722 -33.12664 -32.38294 -30.84219 -28.66782 -27.57969 -25.81356 -23.47335 -22.04994 -20.54484 -19.81058 -19.41871 -18.31728 -16.63310 -16.29529 -16.06972 -15.08935 -14.94866 -14.55632 -14.26980 -13.89252 -13.68692 -13.51095 -13.16025 -13.05715 -12.95028 -12.36814 -12.19896 -12.16884 -11.62235 -10.98263 -10.75615 -10.75469 -10.51292 -10.03991 -9.97164 -9.93995 -9.63485 -9.44657 -9.00786 -8.74851 -8.05207 -6.18888 -4.20941 0.08212 0.53575 1.02493 2.24578 3.19607 3.29374 3.36491 3.44073 3.54915 3.75087 4.14263 4.35615 4.51730 4.76692 4.90951 4.92928 5.04653 5.15594 5.16585 5.20643 5.41747 5.55540 5.76665 6.11298 6.61161 6.72972 7.12057 7.22691 7.39228 7.54863 8.25354 8.29044 8.67581 8.81830 9.15027 9.41726 10.93139 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038895 B = 0.003554 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.708176 B = 7875.588775 C = 8145.278876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.023 4.023 3 N -0.260 5.260 4 N -0.248 5.248 5 C -0.024 4.024 6 C 0.250 3.750 7 H 0.110 0.890 8 C -0.157 4.157 9 N -0.745 5.745 10 C 0.699 3.301 11 O -0.603 6.603 12 N -0.719 5.719 13 C 0.239 3.761 14 C -0.543 4.543 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.893 5.893 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.260 1.260 22 S 0.187 5.813 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.402 0.598 30 H 0.394 0.606 31 H 0.024 0.976 32 H 0.020 0.980 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.737 -4.916 -12.990 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.302 4.302 3 N -0.098 5.098 4 N -0.086 5.086 5 C -0.304 4.304 6 C 0.139 3.861 7 H 0.127 0.873 8 C -0.218 4.218 9 N -0.403 5.403 10 C 0.398 3.602 11 O -0.482 6.482 12 N -0.371 5.371 13 C 0.116 3.884 14 C -0.581 4.581 15 H 0.097 0.903 16 C -0.126 4.126 17 N -0.531 5.531 18 Si 0.704 3.296 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.184 1.184 22 S 0.431 5.569 23 H 0.109 0.891 24 H 0.104 0.896 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.237 0.763 30 H 0.227 0.773 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.156 -5.565 -13.105 25.501 hybrid contribution 0.253 0.252 0.233 0.426 sum -20.903 -5.314 -12.872 25.117 Atomic orbital electron populations 1.20390 0.83833 1.04833 1.04360 1.29297 1.04425 0.92037 1.04438 1.71473 0.96841 1.26743 1.14751 1.71377 1.06473 1.16836 1.13898 1.29429 1.03229 0.93019 1.04688 1.19028 0.79794 0.96582 0.90659 0.87258 1.22223 1.02565 1.03050 0.93925 1.45093 1.27794 1.20448 1.46964 1.16039 0.79778 0.84610 0.79740 1.90863 1.71411 1.19323 1.66623 1.45405 1.28271 1.19441 1.43975 1.19383 0.81140 0.94917 0.92953 1.21098 1.10157 1.02714 1.24106 0.90264 1.24783 0.96372 0.97208 0.94273 1.69883 1.20967 1.35286 1.26916 0.86808 0.80276 0.84561 0.77986 1.19836 1.20958 1.18424 1.83744 0.97016 1.11334 1.64840 0.89078 0.89625 0.88700 0.91706 0.91492 0.90006 0.76348 0.77263 0.95835 0.96235 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.48 36.01 0.38 0.01 16 2 C -0.02 -0.22 7.53 -13.29 -0.10 -0.32 16 3 N -0.26 -3.31 11.66 32.58 0.38 -2.93 16 4 N -0.25 -3.36 11.32 32.58 0.37 -2.99 16 5 C -0.02 -0.29 6.34 -13.30 -0.08 -0.37 16 6 C 0.25 3.23 3.09 -69.08 -0.21 3.01 16 7 H 0.11 1.44 7.58 -51.93 -0.39 1.04 16 8 C -0.16 -1.84 9.47 37.16 0.35 -1.49 16 9 N -0.74 -11.36 5.07 -59.81 -0.30 -11.66 16 10 C 0.70 13.73 8.53 -86.92 -0.74 12.99 16 11 O -0.60 -13.70 16.01 5.28 0.08 -13.61 16 12 N -0.72 -15.04 5.55 -66.41 -0.37 -15.41 16 13 C 0.24 5.95 4.50 -5.19 -0.02 5.93 16 14 C -0.54 -15.07 9.83 -34.44 -0.34 -15.41 16 15 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 17 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 18 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 22 S 0.19 1.61 23.04 -107.50 -2.48 -0.87 16 23 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.40 5.67 8.34 -40.82 -0.34 5.33 16 30 H 0.39 7.40 8.34 -40.82 -0.34 7.06 16 31 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 32 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 304.10 15.07 4.58 4.58 Total: -1.00 -33.87 304.10 -6.45 -40.32 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -3.96 Total: 5.23 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.87 Total: 6.46 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.85 Total: -58.98 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.48 Total: -0.87 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.87 -6.45 -40.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426443537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.938 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds