Wall clock time and date at job start Mon Mar 30 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29419 * 125.69230 * 2 1 4 4 N 1.26397 * 116.47207 * 180.02562 * 3 2 1 5 5 C 1.29421 * 116.47725 * 359.97438 * 4 3 2 6 6 C 1.50691 * 125.69486 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47186 * 165.02644 * 6 5 4 8 8 C 1.53008 * 109.47321 * 285.02552 * 6 5 4 9 9 N 1.46500 * 109.47568 * 45.02598 * 6 5 4 10 10 C 1.34773 * 120.00431 * 155.00128 * 9 6 5 11 11 O 1.21593 * 119.99894 * 359.97438 * 10 9 6 12 12 N 1.34777 * 120.00097 * 179.72742 * 10 9 6 13 13 C 1.46504 * 119.99854 * 180.27545 * 12 10 9 14 14 C 1.50701 * 109.46923 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00027 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00241 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 119.99866 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46710 * 90.00048 * 18 16 14 20 20 H 1.48500 * 109.46865 * 209.99357 * 18 16 14 21 21 H 1.48491 * 109.47392 * 329.99819 * 18 16 14 22 22 S 1.71216 * 125.69585 * 180.30060 * 2 1 3 23 23 H 1.09004 * 109.47269 * 89.98173 * 1 2 3 24 24 H 1.09006 * 109.47386 * 209.97506 * 1 2 3 25 25 H 1.09001 * 109.47930 * 329.98019 * 1 2 3 26 26 H 1.09004 * 109.46414 * 300.00066 * 8 6 5 27 27 H 1.08994 * 109.47203 * 59.99943 * 8 6 5 28 28 H 1.08991 * 109.47246 * 180.02562 * 8 6 5 29 29 H 0.97000 * 119.99456 * 334.99690 * 9 6 5 30 30 H 0.97000 * 119.99736 * 0.26819 * 12 10 9 31 31 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 32 32 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 33 33 H 0.97003 * 119.99905 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0511 0.0000 4 7 3.5097 0.8486 -0.0005 5 6 3.8936 -0.3874 -0.0004 6 6 5.3232 -0.8640 -0.0015 7 1 5.3541 -1.9206 0.2643 8 6 5.9242 -0.6710 -1.3953 9 7 6.0962 -0.0921 0.9746 10 6 7.2087 -0.6198 1.5225 11 8 7.5707 -1.7369 1.2068 12 7 7.9228 0.0925 2.4164 13 6 9.1355 -0.4788 3.0073 14 6 9.7419 0.5125 3.9668 15 1 9.2713 1.4723 4.1206 16 6 10.8974 0.1942 4.6481 17 7 11.4264 1.0592 5.4858 18 14 11.7118 -1.4657 4.3814 19 1 12.6908 -1.3637 3.2694 20 1 12.4144 -1.8775 5.6232 21 1 10.6778 -2.4752 4.0396 22 16 2.5060 -1.3905 -0.0073 23 1 -0.3634 0.0003 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3635 0.8898 0.5141 26 1 5.3491 -1.2454 -2.1216 27 1 5.8933 0.3856 -1.6612 28 1 6.9580 -1.0161 -1.3962 29 1 5.8072 0.7989 1.2266 30 1 7.6338 0.9835 2.6684 31 1 8.8825 -1.3944 3.5420 32 1 9.8523 -0.7053 2.2181 33 1 12.2392 0.8350 5.9654 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426443537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:06 Heat of formation + Delta-G solvation = 1.776990 kcal Electronic energy + Delta-G solvation = -17750.365772 eV Core-core repulsion = 14744.381192 eV Total energy + Delta-G solvation = -3005.984580 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.47917 -41.01458 -37.32747 -36.01832 -34.48532 -33.86238 -32.06723 -29.62687 -29.32182 -26.58159 -24.76356 -23.67314 -22.06097 -20.74641 -20.46224 -19.81475 -18.41459 -17.67393 -16.98892 -16.57827 -16.32756 -16.25960 -15.35976 -15.17058 -14.84818 -14.59097 -14.37426 -14.27304 -14.02949 -13.68388 -13.47782 -13.16484 -12.99424 -12.69849 -12.57686 -11.90487 -11.66156 -11.58595 -11.38343 -11.24332 -10.90744 -10.83264 -10.66844 -10.39655 -9.76127 -8.38562 -6.46073 -0.68789 -0.20442 0.25631 1.35849 1.36638 1.39238 1.50792 1.83167 2.13816 2.30432 2.75200 2.97040 3.39704 3.46605 3.70949 4.04057 4.08465 4.29261 4.60565 4.62893 4.70560 4.72870 4.81612 5.06825 5.07758 5.14529 5.24947 5.36955 5.52294 5.90630 6.23480 6.55981 7.09745 7.20495 7.44284 7.58425 8.76424 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038895 B = 0.003554 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.708176 B = 7875.588775 C = 8145.278876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.019 4.019 3 N -0.300 5.300 4 N -0.274 5.274 5 C -0.051 4.051 6 C 0.247 3.753 7 H 0.109 0.891 8 C -0.152 4.152 9 N -0.730 5.730 10 C 0.702 3.298 11 O -0.632 6.632 12 N -0.722 5.722 13 C 0.252 3.748 14 C -0.548 4.548 15 H 0.055 0.945 16 C 0.025 3.975 17 N -0.933 5.933 18 Si 0.941 3.059 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.257 1.257 22 S 0.253 5.747 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.408 0.592 30 H 0.403 0.597 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.530 -6.510 -14.020 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.297 4.297 3 N -0.139 5.139 4 N -0.112 5.112 5 C -0.331 4.331 6 C 0.138 3.862 7 H 0.126 0.874 8 C -0.211 4.211 9 N -0.387 5.387 10 C 0.402 3.598 11 O -0.514 6.514 12 N -0.375 5.375 13 C 0.128 3.872 14 C -0.586 4.586 15 H 0.073 0.927 16 C -0.175 4.175 17 N -0.572 5.572 18 Si 0.764 3.236 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.181 1.181 22 S 0.498 5.502 23 H 0.129 0.871 24 H 0.129 0.871 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.244 0.756 30 H 0.238 0.762 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.003 -7.135 -14.161 27.938 hybrid contribution 0.625 0.775 0.526 1.126 sum -22.378 -6.360 -13.635 26.965 Atomic orbital electron populations 1.20675 0.80904 1.06150 1.06007 1.30024 1.06190 0.91810 1.01682 1.71460 0.96867 1.28391 1.17174 1.71341 1.07397 1.17999 1.14439 1.29186 1.03666 0.93842 1.06357 1.19153 0.80525 0.96091 0.90419 0.87352 1.22158 1.01821 1.03232 0.93937 1.44978 1.26456 1.20750 1.46513 1.16031 0.80402 0.84040 0.79332 1.90836 1.72428 1.20610 1.67528 1.45164 1.27716 1.20019 1.44601 1.18983 0.82329 0.93782 0.92082 1.21288 1.10287 1.02401 1.24621 0.92661 1.25628 0.97055 1.00902 0.93934 1.69992 1.21779 1.37391 1.28061 0.85801 0.79366 0.79942 0.78446 1.18895 1.19878 1.18070 1.83478 0.94266 1.09217 1.63250 0.87064 0.87130 0.88523 0.88969 0.91828 0.91806 0.75588 0.76207 0.96752 0.96866 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.48 71.24 0.75 0.22 16 2 C -0.02 -0.31 7.53 88.46 0.67 0.36 16 3 N -0.30 -7.32 11.66 -50.85 -0.59 -7.91 16 4 N -0.27 -7.21 11.32 -50.85 -0.58 -7.78 16 5 C -0.05 -1.14 6.34 88.46 0.56 -0.58 16 6 C 0.25 6.15 3.09 44.24 0.14 6.29 16 7 H 0.11 2.72 7.58 -2.39 -0.02 2.71 16 8 C -0.15 -3.39 9.47 71.98 0.68 -2.71 16 9 N -0.73 -21.96 5.07 -461.41 -2.34 -24.30 16 10 C 0.70 27.43 8.53 179.06 1.53 28.96 16 11 O -0.63 -28.52 16.01 -4.01 -0.06 -28.58 16 12 N -0.72 -30.30 5.55 -482.29 -2.68 -32.97 16 13 C 0.25 12.60 4.50 85.63 0.38 12.98 16 14 C -0.55 -30.86 9.83 25.60 0.25 -30.61 16 15 H 0.06 3.30 7.84 -2.91 -0.02 3.27 16 16 C 0.02 1.42 5.47 84.65 0.46 1.89 16 17 N -0.93 -56.51 13.96 21.44 0.30 -56.21 16 18 Si 0.94 44.24 27.47 68.60 1.88 46.12 16 19 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 22 S 0.25 3.70 23.04 -56.49 -1.30 2.40 16 23 H 0.11 0.38 8.14 -2.38 -0.02 0.37 16 24 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.41 11.43 8.34 -92.71 -0.77 10.65 16 30 H 0.40 15.30 8.34 -92.71 -0.77 14.53 16 31 H 0.01 0.75 7.20 -2.39 -0.02 0.74 16 32 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -73.18 304.10 -0.40 -73.57 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.44 Total: 18.87 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 5.42 Total: 16.80 kcal Atomic # 7 Polarization: -123.30 SS G_CDS: -5.89 Total: -129.18 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.06 Total: -28.58 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.30 Total: 2.40 kcal Total: -73.18 -0.40 -73.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426443537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.349 kcal (2) G-P(sol) polarization free energy of solvation -73.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds