Wall clock time and date at job start Mon Mar 30 2020 00:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30865 * 125.88696 * 2 1 4 4 C 1.33692 * 109.76933 * 180.02562 * 3 2 1 5 5 S 1.76199 * 125.61762 * 179.97438 * 4 3 2 6 6 C 1.81398 * 103.00071 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47199 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46891 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00175 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99721 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00118 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47259 * 180.02562 * 11 10 8 13 13 H 1.08003 * 120.00044 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00079 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99667 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47282 * 89.99865 * 16 14 12 18 18 H 1.48503 * 109.47152 * 209.99792 * 16 14 12 19 19 H 1.48497 * 109.47462 * 329.99907 * 16 14 12 20 20 N 1.31248 * 108.76478 * 0.22592 * 4 3 2 21 21 N 1.34349 * 125.88497 * 180.02562 * 2 1 3 22 22 H 0.96999 * 126.75922 * 0.02562 * 21 2 1 23 23 H 1.09002 * 109.47179 * 89.97411 * 1 2 3 24 24 H 1.08998 * 109.47400 * 209.97771 * 1 2 3 25 25 H 1.09000 * 109.47240 * 329.98370 * 1 2 3 26 26 H 1.08998 * 109.47085 * 299.99567 * 6 5 4 27 27 H 1.09000 * 109.46946 * 60.00083 * 6 5 4 28 28 H 1.08990 * 109.47017 * 300.00128 * 7 6 5 29 29 H 1.09000 * 109.46988 * 60.00250 * 7 6 5 30 30 H 0.97000 * 119.99793 * 0.02562 * 10 8 7 31 31 H 1.09002 * 109.46872 * 300.00398 * 11 10 8 32 32 H 1.09004 * 109.46664 * 59.99920 * 11 10 8 33 33 H 0.97002 * 119.99828 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 6 3.5585 0.6891 -0.0006 5 16 4.9419 1.7803 -0.0014 6 6 6.3569 0.6453 -0.0027 7 6 7.6574 1.4514 -0.0042 8 6 8.8329 0.5084 -0.0046 9 8 8.6487 -0.6903 -0.0043 10 7 10.0889 0.9972 -0.0064 11 6 11.2317 0.0805 -0.0074 12 6 12.5125 0.8745 -0.0088 13 1 12.4787 1.9540 -0.0093 14 6 13.7276 0.2228 -0.0104 15 7 13.7687 -1.0917 -0.0103 16 14 15.3152 1.2070 -0.0128 17 1 15.7380 1.4680 1.3867 18 1 16.3738 0.4371 -0.7142 19 1 15.0962 2.4982 -0.7127 20 7 3.6191 -0.6220 -0.0058 21 7 2.2945 -1.0885 -0.0005 22 1 2.0051 -2.0143 -0.0012 23 1 -0.3634 0.0005 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3634 0.8898 0.5141 26 1 6.3195 0.0170 0.8872 27 1 6.3181 0.0173 -0.8928 28 1 7.6945 2.0793 -0.8942 29 1 7.6964 2.0796 0.8857 30 1 10.2362 1.9559 -0.0071 31 1 11.1946 -0.5473 0.8829 32 1 11.1924 -0.5481 -0.8971 33 1 14.6235 -1.5502 -0.0110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427625612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:21 Heat of formation + Delta-G solvation = 30.147175 kcal Electronic energy + Delta-G solvation = -16959.543669 eV Core-core repulsion = 13954.789313 eV Total energy + Delta-G solvation = -3004.754356 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.30032 -38.89799 -34.27565 -33.26131 -32.85605 -32.58157 -32.22470 -28.55934 -27.48025 -24.60832 -23.35968 -22.17300 -21.26382 -19.65227 -18.38261 -17.29069 -16.63272 -16.15641 -15.79580 -15.50573 -15.16099 -14.69710 -14.35165 -13.73804 -13.69719 -13.40775 -13.28503 -12.57536 -12.28925 -12.17017 -11.95054 -11.94416 -11.31018 -10.97946 -10.88488 -10.83971 -10.76506 -10.32278 -10.22440 -10.02620 -9.40735 -9.11865 -8.74740 -7.91472 -7.84270 -6.17254 -4.24287 0.98442 1.22251 1.95854 2.46302 2.59887 3.24346 3.30512 3.31698 3.32970 3.88906 4.11248 4.38127 4.40081 4.77379 4.90418 4.99074 5.01270 5.18970 5.25725 5.40425 5.58242 5.71036 5.76182 5.91483 5.99235 6.70483 7.28855 7.40301 7.50338 7.62355 7.65082 7.95970 8.59245 8.75970 9.06130 9.42272 10.92949 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.069170 B = 0.002654 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.702895 B =10547.095028 C =10920.746104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.288 3.712 3 N -0.519 5.519 4 C 0.213 3.787 5 S 0.017 5.983 6 C -0.092 4.092 7 C -0.128 4.128 8 C 0.505 3.495 9 O -0.554 6.554 10 N -0.710 5.710 11 C 0.249 3.751 12 C -0.544 4.544 13 H 0.064 0.936 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.905 3.095 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 N -0.310 5.310 21 N -0.479 5.479 22 H 0.441 0.559 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.392 0.608 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.876 4.364 0.013 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.008 3.992 3 N -0.250 5.250 4 C -0.177 4.177 5 S 0.245 5.755 6 C -0.242 4.242 7 C -0.170 4.170 8 C 0.287 3.713 9 O -0.434 6.434 10 N -0.359 5.359 11 C 0.128 3.872 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 N -0.144 5.144 21 N -0.198 5.198 22 H 0.287 0.713 23 H 0.112 0.888 24 H 0.103 0.897 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.225 0.775 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.279 4.456 0.006 24.684 hybrid contribution 0.574 -1.217 0.001 1.346 sum -23.705 3.240 0.007 23.925 Atomic orbital electron populations 1.20418 0.83280 1.05172 1.04739 1.24495 0.96700 0.82685 0.95307 1.70563 0.99530 1.29023 1.25897 1.26028 0.97365 0.92951 1.01349 1.85404 0.91001 1.06743 1.92381 1.23387 0.92579 0.99878 1.08310 1.21377 0.91545 0.98777 1.05327 1.20154 0.84381 0.89015 0.77745 1.90683 1.85682 1.16008 1.50982 1.46449 1.06134 1.11132 1.72145 1.19129 0.81183 0.89059 0.97804 1.21228 0.90456 0.93267 1.53243 0.91812 1.24964 0.99442 0.94996 0.94692 1.69977 1.26299 1.07152 1.48871 0.86399 0.82380 0.79807 0.78227 1.20450 1.21022 1.19713 1.78521 0.96821 1.10488 1.28532 1.47887 1.04207 1.10069 1.57672 0.71315 0.88795 0.89700 0.88160 0.88155 0.88158 0.88159 0.88166 0.77508 0.95482 0.95471 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.51 36.01 0.38 0.08 16 2 C 0.29 2.72 8.23 -155.74 -1.28 1.44 16 3 N -0.52 -6.88 11.21 -10.96 -0.12 -7.00 16 4 C 0.21 3.07 8.28 -90.96 -0.75 2.32 16 5 S 0.02 0.22 22.16 -107.50 -2.38 -2.16 16 6 C -0.09 -1.31 4.85 37.16 0.18 -1.13 16 7 C -0.13 -1.75 5.71 -27.88 -0.16 -1.90 16 8 C 0.50 9.82 7.83 -10.99 -0.09 9.74 16 9 O -0.55 -13.21 15.98 5.56 0.09 -13.12 16 10 N -0.71 -14.70 5.55 -61.47 -0.34 -15.04 16 11 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 12 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 13 H 0.06 1.60 7.60 -52.48 -0.40 1.21 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 16 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 N -0.31 -4.43 12.36 30.13 0.37 -4.05 16 21 N -0.48 -4.71 7.43 32.61 0.24 -4.47 16 22 H 0.44 2.59 8.96 -182.34 -1.63 0.95 16 23 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 25 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.10 1.55 8.10 -51.92 -0.42 1.13 16 27 H 0.10 1.55 8.10 -51.92 -0.42 1.13 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.39 6.83 8.32 -40.82 -0.34 6.49 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 310.79 15.07 4.68 4.68 Total: -1.00 -35.97 310.79 -9.22 -45.18 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.31 Total: 1.83 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -2.17 Total: 3.73 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.89 Total: -55.96 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.38 Total: -2.16 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.97 -9.22 -45.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427625612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.330 kcal (2) G-P(sol) polarization free energy of solvation -35.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds