Wall clock time and date at job start Mon Mar 30 2020 00:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30865 * 125.88696 * 2 1 4 4 C 1.33692 * 109.76933 * 180.02562 * 3 2 1 5 5 S 1.76199 * 125.61762 * 179.97438 * 4 3 2 6 6 C 1.81398 * 103.00071 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47199 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46891 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00175 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99721 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00118 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47259 * 180.02562 * 11 10 8 13 13 H 1.08003 * 120.00044 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00079 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99667 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47282 * 89.99865 * 16 14 12 18 18 H 1.48503 * 109.47152 * 209.99792 * 16 14 12 19 19 H 1.48497 * 109.47462 * 329.99907 * 16 14 12 20 20 N 1.31248 * 108.76478 * 0.22592 * 4 3 2 21 21 N 1.34349 * 125.88497 * 180.02562 * 2 1 3 22 22 H 0.96999 * 126.75922 * 0.02562 * 21 2 1 23 23 H 1.09002 * 109.47179 * 89.97411 * 1 2 3 24 24 H 1.08998 * 109.47400 * 209.97771 * 1 2 3 25 25 H 1.09000 * 109.47240 * 329.98370 * 1 2 3 26 26 H 1.08998 * 109.47085 * 299.99567 * 6 5 4 27 27 H 1.09000 * 109.46946 * 60.00083 * 6 5 4 28 28 H 1.08990 * 109.47017 * 300.00128 * 7 6 5 29 29 H 1.09000 * 109.46988 * 60.00250 * 7 6 5 30 30 H 0.97000 * 119.99793 * 0.02562 * 10 8 7 31 31 H 1.09002 * 109.46872 * 300.00398 * 11 10 8 32 32 H 1.09004 * 109.46664 * 59.99920 * 11 10 8 33 33 H 0.97002 * 119.99828 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 6 3.5585 0.6891 -0.0006 5 16 4.9419 1.7803 -0.0014 6 6 6.3569 0.6453 -0.0027 7 6 7.6574 1.4514 -0.0042 8 6 8.8329 0.5084 -0.0046 9 8 8.6487 -0.6903 -0.0043 10 7 10.0889 0.9972 -0.0064 11 6 11.2317 0.0805 -0.0074 12 6 12.5125 0.8745 -0.0088 13 1 12.4787 1.9540 -0.0093 14 6 13.7276 0.2228 -0.0104 15 7 13.7687 -1.0917 -0.0103 16 14 15.3152 1.2070 -0.0128 17 1 15.7380 1.4680 1.3867 18 1 16.3738 0.4371 -0.7142 19 1 15.0962 2.4982 -0.7127 20 7 3.6191 -0.6220 -0.0058 21 7 2.2945 -1.0885 -0.0005 22 1 2.0051 -2.0143 -0.0012 23 1 -0.3634 0.0005 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3634 0.8898 0.5141 26 1 6.3195 0.0170 0.8872 27 1 6.3181 0.0173 -0.8928 28 1 7.6945 2.0793 -0.8942 29 1 7.6964 2.0796 0.8857 30 1 10.2362 1.9559 -0.0071 31 1 11.1946 -0.5473 0.8829 32 1 11.1924 -0.5481 -0.8971 33 1 14.6235 -1.5502 -0.0110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427625612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:21 Heat of formation + Delta-G solvation = 2.936581 kcal Electronic energy + Delta-G solvation = -16960.723609 eV Core-core repulsion = 13954.789313 eV Total energy + Delta-G solvation = -3005.934296 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.16145 -40.57713 -36.20563 -34.41469 -34.04645 -33.91301 -33.44369 -29.54667 -29.08330 -26.12221 -24.45718 -23.86750 -22.11451 -21.31046 -19.23131 -19.01078 -17.81485 -17.41768 -17.07863 -17.00094 -16.77909 -16.12540 -15.53527 -15.22887 -14.94629 -14.19820 -13.94713 -13.92036 -13.77523 -13.76377 -13.46072 -12.88268 -12.84679 -12.72437 -12.49541 -12.22022 -11.80251 -11.74478 -11.48275 -11.21153 -10.90122 -10.82502 -10.80292 -9.84372 -8.84039 -8.28933 -6.45414 -0.02779 0.37212 0.93341 1.44153 1.46446 1.56506 1.57757 1.73310 1.85089 2.33773 2.64005 3.06142 3.27172 3.56485 3.75484 3.85570 4.06137 4.49416 4.54934 4.65717 4.68333 4.77111 4.84825 5.01370 5.10537 5.12287 5.24157 5.48679 5.68965 5.84886 6.08363 6.65825 6.76684 6.88396 7.23725 7.47864 8.83297 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.069170 B = 0.002654 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.702895 B =10547.095028 C =10920.746104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.300 3.700 3 N -0.553 5.553 4 C 0.191 3.809 5 S 0.050 5.950 6 C -0.090 4.090 7 C -0.110 4.110 8 C 0.502 3.498 9 O -0.604 6.604 10 N -0.705 5.705 11 C 0.264 3.736 12 C -0.555 4.555 13 H 0.086 0.914 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.986 3.014 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.254 1.254 20 N -0.350 5.350 21 N -0.471 5.471 22 H 0.457 0.543 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.412 0.588 31 H -0.013 1.013 32 H -0.012 1.012 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.122 6.664 0.000 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.020 3.980 3 N -0.285 5.285 4 C -0.200 4.200 5 S 0.277 5.723 6 C -0.240 4.240 7 C -0.151 4.151 8 C 0.287 3.713 9 O -0.486 6.486 10 N -0.355 5.355 11 C 0.141 3.859 12 C -0.593 4.593 13 H 0.104 0.896 14 C -0.198 4.198 15 N -0.571 5.571 16 Si 0.809 3.191 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.178 1.178 20 N -0.185 5.185 21 N -0.192 5.192 22 H 0.306 0.694 23 H 0.131 0.869 24 H 0.134 0.866 25 H 0.124 0.876 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.248 0.752 31 H 0.005 0.995 32 H 0.006 0.994 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.574 6.785 -0.007 26.458 hybrid contribution 0.764 -2.020 0.005 2.160 sum -24.810 4.765 -0.001 25.263 Atomic orbital electron populations 1.20729 0.79141 1.06949 1.06451 1.25485 0.98504 0.81534 0.92446 1.70560 0.99336 1.30866 1.27752 1.26292 0.98333 0.93325 1.02011 1.85077 0.89631 1.05180 1.92373 1.23214 0.94053 1.00189 1.06560 1.21317 0.87928 0.97424 1.08469 1.21168 0.85211 0.89255 0.75623 1.90664 1.86401 1.18773 1.52748 1.46166 1.05369 1.11393 1.72533 1.18563 0.83769 0.89394 0.94125 1.21639 0.90545 0.94371 1.52719 0.89553 1.26094 1.03776 0.96028 0.93915 1.70144 1.27443 1.09414 1.50079 0.85138 0.76887 0.78499 0.78583 1.19617 1.21104 1.17779 1.78409 0.99519 1.10800 1.29775 1.47828 1.02961 1.11231 1.57211 0.69417 0.86865 0.86615 0.87631 0.90014 0.90019 0.84845 0.84849 0.75185 0.99466 0.99449 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.51 71.24 0.75 0.41 16 2 C 0.30 5.17 8.23 138.24 1.14 6.31 16 3 N -0.55 -14.15 11.21 -188.59 -2.11 -16.27 16 4 C 0.19 5.45 8.28 180.47 1.49 6.94 16 5 S 0.05 1.24 22.16 -56.49 -1.25 -0.01 16 6 C -0.09 -2.56 4.85 71.98 0.35 -2.21 16 7 C -0.11 -2.82 5.71 29.85 0.17 -2.65 16 8 C 0.50 19.70 7.83 87.66 0.69 20.38 16 9 O -0.60 -30.09 15.98 -3.01 -0.05 -30.14 16 10 N -0.70 -29.23 5.55 -466.79 -2.59 -31.82 16 11 C 0.26 14.53 5.43 85.63 0.46 15.00 16 12 C -0.55 -30.08 9.28 25.60 0.24 -29.84 16 13 H 0.09 4.19 7.60 -2.91 -0.02 4.16 16 14 C 0.00 0.07 5.46 84.66 0.46 0.53 16 15 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 16 Si 0.99 42.31 29.54 68.60 2.03 44.34 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 18 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.25 -10.09 7.11 99.48 0.71 -9.39 16 20 N -0.35 -10.07 12.36 -58.58 -0.72 -10.79 16 21 N -0.47 -8.82 7.43 -50.73 -0.38 -9.20 16 22 H 0.46 4.80 8.96 -213.10 -1.91 2.89 16 23 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 24 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 25 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 27 H 0.08 2.60 8.10 -2.39 -0.02 2.59 16 28 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.41 13.68 8.32 -92.71 -0.77 12.91 16 31 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -82.45 310.79 -0.57 -83.03 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -1.53 Total: 12.25 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 5.75 Total: 14.87 kcal Atomic # 7 Polarization: -118.82 SS G_CDS: -5.52 Total: -124.34 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.05 Total: -30.14 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.25 Total: -0.01 kcal Total: -82.45 -0.57 -83.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427625612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.964 kcal (2) G-P(sol) polarization free energy of solvation -82.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds