Wall clock time and date at job start Mon Mar 30 2020 01:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 S 1.81398 * 109.46973 * 240.00422 * 2 1 3 5 5 C 1.81408 * 103.00267 * 64.99781 * 4 2 1 6 6 C 1.52995 * 109.47152 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.47638 * 59.99982 * 6 5 4 8 8 O 1.42907 * 109.47158 * 299.99793 * 6 5 4 9 9 C 1.50699 * 109.46816 * 179.97438 * 6 5 4 10 10 H 1.07995 * 120.00213 * 0.02562 * 9 6 5 11 11 C 1.37885 * 120.00110 * 180.02562 * 9 6 5 12 12 N 1.31515 * 119.99449 * 359.97438 * 11 9 6 13 13 Si 1.86796 * 120.00021 * 180.02562 * 11 9 6 14 14 H 1.48492 * 109.47408 * 59.99812 * 13 11 9 15 15 H 1.48506 * 109.46814 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47083 * 299.99524 * 13 11 9 17 17 C 1.50696 * 109.47430 * 120.00564 * 2 1 3 18 18 C 1.38248 * 119.97128 * 239.99664 * 17 2 1 19 19 C 1.38196 * 120.02483 * 179.97438 * 18 17 2 20 20 C 1.38458 * 119.97492 * 0.02562 * 19 18 17 21 21 F 1.35104 * 120.02786 * 179.97438 * 20 19 18 22 22 C 1.38465 * 119.94675 * 0.24873 * 20 19 18 23 23 C 1.38197 * 119.97511 * 359.47283 * 22 20 19 24 24 H 1.09001 * 109.47810 * 59.99492 * 1 2 3 25 25 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46818 * 299.99522 * 1 2 3 27 27 H 1.08997 * 109.46835 * 300.00137 * 5 4 2 28 28 H 1.08994 * 109.46980 * 59.99754 * 5 4 2 29 29 H 0.96696 * 113.99885 * 300.00366 * 8 6 5 30 30 H 0.97006 * 119.99518 * 180.02562 * 12 11 9 31 31 H 1.08001 * 119.98881 * 0.02562 * 18 17 2 32 32 H 1.07995 * 120.01604 * 180.02562 * 19 18 17 33 33 H 1.08007 * 120.01064 * 179.75151 * 22 20 19 34 34 H 1.07994 * 119.98821 * 180.29814 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8550 -1.4812 5 6 1.5663 0.2155 -2.8310 6 6 2.0037 -0.3782 -4.1714 7 1 1.5697 -1.3713 -4.2880 8 8 3.4291 -0.4741 -4.2075 9 6 1.5310 0.5108 -5.2927 10 1 0.9747 1.4095 -5.0714 11 6 1.8089 0.1767 -6.6013 12 7 2.4868 -0.9175 -6.8708 13 14 1.2236 1.2790 -7.9911 14 1 1.8154 2.6317 -7.8328 15 1 1.6481 0.7027 -9.2923 16 1 -0.2576 1.3792 -7.9532 17 6 2.0323 -0.7105 1.2303 18 6 2.8272 -0.0381 2.1400 19 6 3.2881 -0.6885 3.2689 20 6 2.9540 -2.0141 3.4885 21 9 3.4044 -2.6510 4.5915 22 6 2.1625 -2.6881 2.5739 23 6 1.6980 -2.0340 1.4486 24 1 -0.3635 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.4791 0.2883 -2.8037 28 1 1.9999 1.2086 -2.7142 29 1 3.8830 0.3740 -4.1093 30 1 2.6826 -1.1524 -7.7914 31 1 3.0874 0.9960 1.9687 32 1 3.9087 -0.1630 3.9796 33 1 1.9045 -3.7233 2.7421 34 1 1.0767 -2.5581 0.7375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450833817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:20 Heat of formation + Delta-G solvation = -85.481778 kcal Electronic energy + Delta-G solvation = -17533.245372 eV Core-core repulsion = 14471.264255 eV Total energy + Delta-G solvation = -3061.981117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.00140 -39.33976 -35.86425 -34.08397 -32.18713 -31.28181 -29.87405 -28.92065 -25.32633 -24.12718 -23.11311 -21.51222 -20.73392 -17.80720 -17.19885 -16.64275 -16.21994 -15.69865 -15.16795 -14.67544 -14.54339 -14.27952 -14.06918 -13.87556 -13.72139 -13.58052 -12.98574 -12.73610 -12.64682 -11.94625 -11.72845 -11.40461 -11.28501 -11.17341 -11.04898 -10.89897 -10.71145 -10.09085 -9.51555 -9.22695 -9.09232 -8.65087 -8.60522 -8.24547 -7.11922 -6.07894 -4.28427 0.91621 1.11568 2.19867 3.16563 3.24522 3.30538 3.32085 3.53356 4.13346 4.33429 4.48594 4.60112 4.75344 4.97593 5.13935 5.18977 5.24565 5.31263 5.58799 5.72768 5.79242 5.85282 5.89725 5.98759 5.99628 6.08211 6.14717 6.29730 6.41804 6.65109 6.75281 7.59272 7.74232 8.03895 8.73010 9.31937 9.49419 10.95905 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.047485 B = 0.003500 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.512951 B = 7998.625673 C = 8195.079306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.034 4.034 3 H 0.089 0.911 4 S -0.241 6.241 5 C -0.101 4.101 6 C 0.247 3.753 7 H 0.064 0.936 8 O -0.555 6.555 9 C -0.573 4.573 10 H 0.057 0.943 11 C 0.081 3.919 12 N -0.855 5.855 13 Si 0.894 3.106 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.064 4.064 18 C -0.080 4.080 19 C -0.154 4.154 20 C 0.091 3.909 21 F -0.143 7.143 22 C -0.152 4.152 23 C -0.071 4.071 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.345 0.655 30 H 0.263 0.737 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 1.405 18.170 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 H 0.108 0.892 4 S -0.011 6.011 5 C -0.249 4.249 6 C 0.188 3.812 7 H 0.082 0.918 8 O -0.358 6.358 9 C -0.613 4.613 10 H 0.075 0.925 11 C -0.126 4.126 12 N -0.490 5.490 13 Si 0.721 3.279 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.065 4.065 18 C -0.100 4.100 19 C -0.172 4.172 20 C 0.072 3.928 21 F -0.122 7.122 22 C -0.170 4.170 23 C -0.091 4.091 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.189 0.811 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.531 -0.342 17.904 17.973 hybrid contribution -0.845 2.282 -0.498 2.484 sum -2.375 1.941 17.406 17.675 Atomic orbital electron populations 1.22097 0.92730 1.03225 1.02152 1.22046 0.98648 1.01265 0.94280 0.89245 1.87309 1.75607 1.38884 0.99258 1.24635 1.02957 0.99883 0.97465 1.19137 0.79744 0.96821 0.85541 0.91831 1.86612 1.19997 1.33226 1.95918 1.21504 1.38814 1.09738 0.91223 0.92520 1.25039 0.93959 0.94847 0.98770 1.70074 1.36317 1.23089 1.19539 0.86662 0.79221 0.80837 0.81225 1.20083 1.21076 1.20082 1.19414 0.98032 0.94367 0.94734 1.20895 0.96074 1.00176 0.92861 1.21068 1.03048 0.93400 0.99725 1.17735 0.98656 0.91478 0.84952 1.91486 1.87595 1.82030 1.51100 1.21136 0.99927 1.01028 0.94941 1.20970 0.98360 0.93728 0.96017 0.91749 0.91293 0.92244 0.90656 0.91369 0.81112 0.92714 0.84980 0.84787 0.84678 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.91 37.15 0.33 -1.35 16 2 C -0.03 -0.45 3.01 -27.89 -0.08 -0.53 16 3 H 0.09 1.12 7.87 -51.92 -0.41 0.71 16 4 S -0.24 -4.28 20.40 -107.50 -2.19 -6.47 16 5 C -0.10 -1.99 5.27 37.15 0.20 -1.80 16 6 C 0.25 6.14 2.87 -27.89 -0.08 6.06 16 7 H 0.06 1.77 8.14 -51.93 -0.42 1.35 16 8 O -0.56 -14.27 12.33 -35.23 -0.43 -14.70 16 9 C -0.57 -15.29 8.76 -34.44 -0.30 -15.59 16 10 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 11 C 0.08 2.22 5.40 -17.82 -0.10 2.13 16 12 N -0.86 -24.97 12.84 55.43 0.71 -24.26 16 13 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 C -0.06 -0.79 4.78 -104.62 -0.50 -1.29 16 18 C -0.08 -0.87 9.67 -39.59 -0.38 -1.26 16 19 C -0.15 -1.61 10.03 -39.52 -0.40 -2.01 16 20 C 0.09 1.05 7.30 -39.42 -0.29 0.77 16 21 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 22 C -0.15 -1.69 10.03 -39.51 -0.40 -2.09 16 23 C -0.07 -0.86 8.77 -39.59 -0.35 -1.20 16 24 H 0.06 0.79 6.92 -51.93 -0.36 0.43 16 25 H 0.07 0.80 7.39 -51.93 -0.38 0.41 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.41 7.14 -51.93 -0.37 1.04 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.35 7.88 9.04 45.56 0.41 8.30 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 31 H 0.13 1.18 7.94 -52.49 -0.42 0.76 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 34 H 0.14 1.61 7.58 -52.49 -0.40 1.21 16 LS Contribution 308.98 15.07 4.66 4.66 Total: -1.00 -29.93 308.98 -8.17 -38.10 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.58 Total: 6.86 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -2.35 Total: -18.16 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.71 Total: -24.26 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.43 Total: -14.70 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -2.19 Total: -6.47 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.93 -8.17 -38.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450833817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.386 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds