Wall clock time and date at job start Mon Mar 30 2020 01:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 S 1.81398 * 109.46973 * 240.00422 * 2 1 3 5 5 C 1.81408 * 103.00267 * 64.99781 * 4 2 1 6 6 C 1.52995 * 109.47152 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.47638 * 59.99982 * 6 5 4 8 8 O 1.42907 * 109.47158 * 299.99793 * 6 5 4 9 9 C 1.50699 * 109.46816 * 179.97438 * 6 5 4 10 10 H 1.07995 * 120.00213 * 0.02562 * 9 6 5 11 11 C 1.37885 * 120.00110 * 180.02562 * 9 6 5 12 12 N 1.31515 * 119.99449 * 359.97438 * 11 9 6 13 13 Si 1.86796 * 120.00021 * 180.02562 * 11 9 6 14 14 H 1.48492 * 109.47408 * 59.99812 * 13 11 9 15 15 H 1.48506 * 109.46814 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47083 * 299.99524 * 13 11 9 17 17 C 1.50696 * 109.47430 * 120.00564 * 2 1 3 18 18 C 1.38248 * 119.97128 * 239.99664 * 17 2 1 19 19 C 1.38196 * 120.02483 * 179.97438 * 18 17 2 20 20 C 1.38458 * 119.97492 * 0.02562 * 19 18 17 21 21 F 1.35104 * 120.02786 * 179.97438 * 20 19 18 22 22 C 1.38465 * 119.94675 * 0.24873 * 20 19 18 23 23 C 1.38197 * 119.97511 * 359.47283 * 22 20 19 24 24 H 1.09001 * 109.47810 * 59.99492 * 1 2 3 25 25 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46818 * 299.99522 * 1 2 3 27 27 H 1.08997 * 109.46835 * 300.00137 * 5 4 2 28 28 H 1.08994 * 109.46980 * 59.99754 * 5 4 2 29 29 H 0.96696 * 113.99885 * 300.00366 * 8 6 5 30 30 H 0.97006 * 119.99518 * 180.02562 * 12 11 9 31 31 H 1.08001 * 119.98881 * 0.02562 * 18 17 2 32 32 H 1.07995 * 120.01604 * 180.02562 * 19 18 17 33 33 H 1.08007 * 120.01064 * 179.75151 * 22 20 19 34 34 H 1.07994 * 119.98821 * 180.29814 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8550 -1.4812 5 6 1.5663 0.2155 -2.8310 6 6 2.0037 -0.3782 -4.1714 7 1 1.5697 -1.3713 -4.2880 8 8 3.4291 -0.4741 -4.2075 9 6 1.5310 0.5108 -5.2927 10 1 0.9747 1.4095 -5.0714 11 6 1.8089 0.1767 -6.6013 12 7 2.4868 -0.9175 -6.8708 13 14 1.2236 1.2790 -7.9911 14 1 1.8154 2.6317 -7.8328 15 1 1.6481 0.7027 -9.2923 16 1 -0.2576 1.3792 -7.9532 17 6 2.0323 -0.7105 1.2303 18 6 2.8272 -0.0381 2.1400 19 6 3.2881 -0.6885 3.2689 20 6 2.9540 -2.0141 3.4885 21 9 3.4044 -2.6510 4.5915 22 6 2.1625 -2.6881 2.5739 23 6 1.6980 -2.0340 1.4486 24 1 -0.3635 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.4791 0.2883 -2.8037 28 1 1.9999 1.2086 -2.7142 29 1 3.8830 0.3740 -4.1093 30 1 2.6826 -1.1524 -7.7914 31 1 3.0874 0.9960 1.9687 32 1 3.9087 -0.1630 3.9796 33 1 1.9045 -3.7233 2.7421 34 1 1.0767 -2.5581 0.7375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450833817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:20 Heat of formation + Delta-G solvation = -102.996656 kcal Electronic energy + Delta-G solvation = -17534.004874 eV Core-core repulsion = 14471.264255 eV Total energy + Delta-G solvation = -3062.740619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.90114 -40.22053 -37.83804 -35.04519 -34.27618 -32.12981 -31.59956 -29.95626 -27.29875 -25.07552 -23.97040 -23.13284 -21.96891 -19.22581 -18.67854 -17.66159 -17.33816 -16.69494 -16.59775 -16.24230 -16.20724 -15.86703 -15.37110 -15.26014 -14.66011 -14.44967 -14.35018 -13.91468 -13.68649 -13.24468 -13.20331 -13.07938 -12.78469 -12.71345 -12.47675 -12.19885 -11.95567 -11.81685 -11.26693 -10.74724 -10.59059 -10.26767 -10.06636 -9.51945 -8.53477 -8.15289 -6.43237 -0.03828 0.26996 0.95225 1.42530 1.43894 1.52334 1.80071 2.39688 2.64772 3.10891 3.26544 3.54271 3.72331 3.96119 4.04622 4.16564 4.20949 4.27359 4.36445 4.41811 4.46084 4.71166 4.83258 4.94593 4.97534 5.01236 5.13827 5.19491 5.26483 5.52404 5.55488 5.66623 5.89359 5.99337 6.67055 7.30316 7.51021 8.88925 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.047485 B = 0.003500 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.512951 B = 7998.625673 C = 8195.079306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.014 4.014 3 H 0.102 0.898 4 S -0.282 6.282 5 C -0.085 4.085 6 C 0.246 3.754 7 H 0.022 0.978 8 O -0.572 6.572 9 C -0.585 4.585 10 H 0.066 0.934 11 C 0.026 3.974 12 N -0.900 5.900 13 Si 0.965 3.035 14 H -0.265 1.265 15 H -0.286 1.286 16 H -0.266 1.266 17 C -0.079 4.079 18 C -0.078 4.078 19 C -0.151 4.151 20 C 0.081 3.919 21 F -0.147 7.147 22 C -0.156 4.156 23 C -0.081 4.081 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.356 0.644 30 H 0.262 0.738 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 3.149 19.467 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 H 0.121 0.879 4 S -0.051 6.051 5 C -0.233 4.233 6 C 0.187 3.813 7 H 0.040 0.960 8 O -0.376 6.376 9 C -0.624 4.624 10 H 0.084 0.916 11 C -0.177 4.177 12 N -0.536 5.536 13 Si 0.789 3.211 14 H -0.190 1.190 15 H -0.212 1.212 16 H -0.191 1.191 17 C -0.080 4.080 18 C -0.098 4.098 19 C -0.169 4.169 20 C 0.061 3.939 21 F -0.126 7.126 22 C -0.174 4.174 23 C -0.100 4.100 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.201 0.799 30 H 0.071 0.929 31 H 0.172 0.828 32 H 0.175 0.825 33 H 0.166 0.834 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.972 1.420 19.206 19.359 hybrid contribution -0.686 1.692 -0.746 1.972 sum -2.658 3.112 18.460 18.908 Atomic orbital electron populations 1.22079 0.91588 1.03402 1.02925 1.22068 0.99464 1.01123 0.91579 0.87936 1.87393 1.76305 1.39935 1.01463 1.24163 1.03249 1.00046 0.95860 1.18909 0.79260 0.94794 0.88332 0.95983 1.86553 1.20606 1.34221 1.96237 1.21936 1.38338 1.10061 0.92102 0.91569 1.25952 0.93985 0.96147 1.01643 1.70229 1.38185 1.25212 1.19982 0.85535 0.79010 0.78996 0.77578 1.18981 1.21191 1.19127 1.19447 0.99166 0.94652 0.94767 1.21143 0.95041 1.01189 0.92379 1.21342 1.02664 0.93003 0.99933 1.17955 0.98895 0.92097 0.84937 1.91478 1.87654 1.82193 1.51269 1.21294 0.99727 1.01788 0.94629 1.21024 0.98723 0.93954 0.96324 0.92421 0.91531 0.89831 0.89968 0.90293 0.79924 0.92866 0.82755 0.82482 0.83350 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.91 71.98 0.64 -2.38 16 2 C -0.01 -0.35 3.01 29.84 0.09 -0.26 16 3 H 0.10 2.26 7.87 -2.39 -0.02 2.24 16 4 S -0.28 -9.89 20.40 -56.49 -1.15 -11.05 16 5 C -0.08 -3.32 5.27 71.98 0.38 -2.94 16 6 C 0.25 12.49 2.87 29.85 0.09 12.58 16 7 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 8 O -0.57 -30.04 12.33 -148.98 -1.84 -31.87 16 9 C -0.59 -31.31 8.76 25.60 0.22 -31.08 16 10 H 0.07 3.33 7.74 -2.91 -0.02 3.31 16 11 C 0.03 1.41 5.40 84.66 0.46 1.87 16 12 N -0.90 -53.66 12.84 21.45 0.28 -53.39 16 13 Si 0.96 42.33 29.54 68.60 2.03 44.35 16 14 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 15 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 17 C -0.08 -1.78 4.78 -19.86 -0.09 -1.87 16 18 C -0.08 -1.47 9.67 22.26 0.22 -1.26 16 19 C -0.15 -2.77 10.03 22.31 0.22 -2.54 16 20 C 0.08 1.72 7.30 22.38 0.16 1.88 16 21 F -0.15 -3.27 17.27 44.97 0.78 -2.49 16 22 C -0.16 -3.28 10.03 22.31 0.22 -3.06 16 23 C -0.08 -1.84 8.77 22.26 0.20 -1.65 16 24 H 0.06 1.32 6.92 -2.39 -0.02 1.30 16 25 H 0.07 1.46 7.39 -2.39 -0.02 1.44 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 3.04 7.14 -2.39 -0.02 3.03 16 28 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.36 16.45 9.04 -74.06 -0.67 15.78 16 30 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 31 H 0.15 2.18 7.94 -2.91 -0.02 2.15 16 32 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 34 H 0.14 3.09 7.58 -2.91 -0.02 3.07 16 Total: -1.00 -64.62 308.98 3.33 -61.28 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.44 Total: 23.87 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 2.80 Total: -30.71 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.28 Total: -53.39 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -1.84 Total: -31.87 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: -9.89 SS G_CDS: -1.15 Total: -11.05 kcal Total: -64.62 3.33 -61.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450833817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.712 kcal (2) G-P(sol) polarization free energy of solvation -64.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds