Wall clock time and date at job start Mon Mar 30 2020 01:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86799 * 119.99698 * 2 1 4 4 H 1.48501 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47574 * 300.00214 * 3 2 1 6 6 H 1.48505 * 109.47000 * 60.00316 * 3 2 1 7 7 C 1.39933 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00297 * 185.53939 * 7 2 1 9 9 C 1.41408 * 119.99922 * 5.53733 * 7 2 1 10 10 C 1.40780 * 120.20820 * 34.42148 * 9 7 2 11 11 C 1.37643 * 119.88226 * 180.31881 * 10 9 7 12 12 C 1.38534 * 120.31786 * 359.42853 * 11 10 9 13 13 C 1.39239 * 120.43050 * 0.30828 * 12 11 10 14 14 N 1.39962 * 119.94731 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00119 * 145.41601 * 14 13 12 16 16 O 1.21583 * 120.00042 * 354.29004 * 15 14 13 17 17 N 1.34778 * 119.99898 * 174.28538 * 15 14 13 18 18 C 1.46500 * 119.99905 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47301 * 179.97438 * 18 17 15 20 20 F 1.39902 * 109.47037 * 300.00653 * 19 18 17 21 21 F 1.39902 * 109.46944 * 60.00309 * 19 18 17 22 22 C 1.38270 * 120.10841 * 359.97438 * 13 12 11 23 23 H 0.96996 * 120.00388 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.06330 * 0.02833 * 10 9 7 25 25 H 1.07998 * 119.84124 * 179.71089 * 11 10 9 26 26 H 1.08004 * 119.78040 * 180.27726 * 12 11 10 27 27 H 0.96997 * 119.99613 * 325.41876 * 14 13 12 28 28 H 0.96998 * 120.00046 * 0.02562 * 17 15 14 29 29 H 1.09000 * 109.47529 * 300.00381 * 18 17 15 30 30 H 1.09004 * 109.46822 * 60.00658 * 18 17 15 31 31 H 1.09002 * 109.47400 * 180.02562 * 19 18 17 32 32 H 1.08001 * 120.16124 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0842 -1.2140 0.0897 9 6 1.3060 -2.4336 -0.1193 10 6 0.1447 -2.5091 -0.9114 11 6 -0.5372 -3.7001 -1.0170 12 6 -0.0796 -4.8288 -0.3567 13 6 1.0706 -4.7703 0.4258 14 7 1.5235 -5.9166 1.0889 15 6 2.8457 -6.1288 1.2415 16 8 3.6462 -5.3806 0.7146 17 7 3.2805 -7.1702 1.9783 18 6 4.7177 -7.4011 2.1437 19 6 4.9384 -8.6370 3.0182 20 9 4.3516 -8.4321 4.2716 21 9 4.3544 -9.7514 2.4065 22 6 1.7661 -3.5816 0.5490 23 1 -0.4850 0.8400 0.0004 24 1 -0.2133 -1.6330 -1.4317 25 1 -1.4306 -3.7561 -1.6211 26 1 -0.6189 -5.7599 -0.4492 27 1 0.8858 -6.5584 1.4386 28 1 2.6418 -7.7673 2.3983 29 1 5.1749 -7.5603 1.1671 30 1 5.1726 -6.5330 2.6207 31 1 6.0077 -8.8085 3.1417 32 1 2.6581 -3.5352 1.1561 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455914644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:50 Heat of formation + Delta-G solvation = -112.918270 kcal Electronic energy + Delta-G solvation = -19785.907748 eV Core-core repulsion = 16188.816471 eV Total energy + Delta-G solvation = -3597.091277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.29147 -47.28322 -39.95946 -37.41758 -34.95251 -34.31242 -32.97183 -29.88116 -29.76591 -27.65108 -25.23891 -23.41118 -21.64698 -20.85740 -20.20110 -18.40336 -17.83476 -17.68478 -17.50319 -16.34612 -15.57784 -15.38729 -15.05425 -14.62111 -14.37792 -14.20934 -13.98802 -13.65343 -13.33805 -12.91676 -12.78952 -12.71105 -12.13717 -11.64199 -11.39537 -11.14533 -11.11010 -10.92649 -10.41152 -10.24417 -9.67226 -9.47546 -9.23839 -9.10191 -8.97127 -7.34127 -6.87018 -6.57953 -4.31853 2.65818 2.81936 2.95641 3.14371 3.20300 3.22637 3.39814 3.64857 3.85412 4.03728 4.28225 4.34072 4.58868 4.75460 5.30255 5.32747 5.70227 6.23390 6.31047 6.39294 6.70257 6.77832 7.05364 7.12048 7.25401 7.35168 7.70473 7.80018 7.98882 8.16203 8.25999 8.39476 8.71242 8.89308 9.01678 9.02916 10.36125 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027285 B = 0.004077 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.969152 B = 6866.409838 C = 7618.571726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.121 3.879 10 C -0.158 4.158 11 C -0.097 4.097 12 C -0.251 4.251 13 C 0.162 3.838 14 N -0.678 5.678 15 C 0.702 3.298 16 O -0.565 6.565 17 N -0.751 5.751 18 C 0.092 3.908 19 C 0.254 3.746 20 F -0.202 7.202 21 F -0.203 7.203 22 C -0.200 4.200 23 H 0.277 0.723 24 H 0.118 0.882 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.395 0.605 28 H 0.398 0.602 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.924 -13.647 5.376 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.118 3.882 10 C -0.178 4.178 11 C -0.116 4.116 12 C -0.273 4.273 13 C 0.070 3.930 14 N -0.325 5.325 15 C 0.403 3.597 16 O -0.440 6.440 17 N -0.409 5.409 18 C -0.034 4.034 19 C 0.200 3.800 20 F -0.183 7.183 21 F -0.184 7.184 22 C -0.222 4.222 23 H 0.088 0.912 24 H 0.136 0.864 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.229 0.771 28 H 0.232 0.768 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.489 -12.806 4.931 15.179 hybrid contribution -0.433 -0.001 0.545 0.696 sum 6.056 -12.807 5.476 15.188 Atomic orbital electron populations 1.69785 1.07267 1.28652 1.38169 1.25836 0.94860 1.00985 0.92533 0.86213 0.80789 0.81036 0.78335 1.18559 1.19930 1.20107 1.19556 0.94964 0.90005 1.44978 0.90490 1.17511 0.91300 0.91632 0.87784 1.21369 0.98578 0.96264 1.01571 1.20486 0.98529 0.93284 0.99285 1.20077 1.01237 0.98219 1.07750 1.17249 0.95910 0.84236 0.95607 1.42540 1.04871 1.24994 1.60067 1.15854 0.83214 0.81033 0.79633 1.90989 1.53823 1.47483 1.51675 1.44848 1.06825 1.32283 1.56993 1.22273 0.83372 0.96581 1.01190 1.22299 0.96032 0.83971 0.77667 1.93021 1.86916 1.95152 1.43230 1.93013 1.87046 1.55195 1.83164 1.21105 1.03310 0.91794 1.05982 0.91242 0.86399 0.88898 0.89187 0.77098 0.76820 0.88495 0.88397 0.85607 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.59 10.97 55.55 0.61 -20.98 16 2 C 0.07 1.90 5.31 -17.34 -0.09 1.81 16 3 Si 0.91 19.54 29.56 -169.99 -5.03 14.51 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.46 -12.94 9.04 -37.74 -0.34 -13.28 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.12 3.35 5.50 -106.85 -0.59 2.77 16 10 C -0.16 -4.18 8.62 -38.84 -0.33 -4.51 16 11 C -0.10 -2.27 10.02 -39.69 -0.40 -2.67 16 12 C -0.25 -5.55 9.97 -39.10 -0.39 -5.94 16 13 C 0.16 3.71 6.25 -83.76 -0.52 3.19 16 14 N -0.68 -12.30 5.34 -14.27 -0.08 -12.38 16 15 C 0.70 12.73 8.28 -86.92 -0.72 12.01 16 16 O -0.56 -12.75 14.13 5.29 0.07 -12.68 16 17 N -0.75 -9.63 5.42 -65.23 -0.35 -9.99 16 18 C 0.09 0.92 5.91 -4.04 -0.02 0.89 16 19 C 0.25 1.88 5.42 37.16 0.20 2.08 16 20 F -0.20 -1.93 17.20 2.25 0.04 -1.89 16 21 F -0.20 -1.88 17.20 2.25 0.04 -1.84 16 22 C -0.20 -5.26 8.39 -38.69 -0.32 -5.58 16 23 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 24 H 0.12 3.21 6.48 -52.49 -0.34 2.87 16 25 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 26 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 27 H 0.40 5.56 8.84 -40.82 -0.36 5.20 16 28 H 0.40 4.19 8.38 -40.82 -0.34 3.85 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.11 2.90 6.51 -52.49 -0.34 2.56 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -32.68 290.73 -6.89 -39.57 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -3.04 Total: 10.53 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -3.53 Total: -9.24 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.18 Total: -43.35 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.08 Total: -3.73 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.68 -6.89 -39.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455914644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.350 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds