Wall clock time and date at job start Mon Mar 30 2020 01:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86799 * 119.99698 * 2 1 4 4 H 1.48501 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47574 * 300.00214 * 3 2 1 6 6 H 1.48505 * 109.47000 * 60.00316 * 3 2 1 7 7 C 1.39933 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00297 * 185.53939 * 7 2 1 9 9 C 1.41408 * 119.99922 * 5.53733 * 7 2 1 10 10 C 1.40780 * 120.20820 * 34.42148 * 9 7 2 11 11 C 1.37643 * 119.88226 * 180.31881 * 10 9 7 12 12 C 1.38534 * 120.31786 * 359.42853 * 11 10 9 13 13 C 1.39239 * 120.43050 * 0.30828 * 12 11 10 14 14 N 1.39962 * 119.94731 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00119 * 145.41601 * 14 13 12 16 16 O 1.21583 * 120.00042 * 354.29004 * 15 14 13 17 17 N 1.34778 * 119.99898 * 174.28538 * 15 14 13 18 18 C 1.46500 * 119.99905 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47301 * 179.97438 * 18 17 15 20 20 F 1.39902 * 109.47037 * 300.00653 * 19 18 17 21 21 F 1.39902 * 109.46944 * 60.00309 * 19 18 17 22 22 C 1.38270 * 120.10841 * 359.97438 * 13 12 11 23 23 H 0.96996 * 120.00388 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.06330 * 0.02833 * 10 9 7 25 25 H 1.07998 * 119.84124 * 179.71089 * 11 10 9 26 26 H 1.08004 * 119.78040 * 180.27726 * 12 11 10 27 27 H 0.96997 * 119.99613 * 325.41876 * 14 13 12 28 28 H 0.96998 * 120.00046 * 0.02562 * 17 15 14 29 29 H 1.09000 * 109.47529 * 300.00381 * 18 17 15 30 30 H 1.09004 * 109.46822 * 60.00658 * 18 17 15 31 31 H 1.09002 * 109.47400 * 180.02562 * 19 18 17 32 32 H 1.08001 * 120.16124 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0842 -1.2140 0.0897 9 6 1.3060 -2.4336 -0.1193 10 6 0.1447 -2.5091 -0.9114 11 6 -0.5372 -3.7001 -1.0170 12 6 -0.0796 -4.8288 -0.3567 13 6 1.0706 -4.7703 0.4258 14 7 1.5235 -5.9166 1.0889 15 6 2.8457 -6.1288 1.2415 16 8 3.6462 -5.3806 0.7146 17 7 3.2805 -7.1702 1.9783 18 6 4.7177 -7.4011 2.1437 19 6 4.9384 -8.6370 3.0182 20 9 4.3516 -8.4321 4.2716 21 9 4.3544 -9.7514 2.4065 22 6 1.7661 -3.5816 0.5490 23 1 -0.4850 0.8400 0.0004 24 1 -0.2133 -1.6330 -1.4317 25 1 -1.4306 -3.7561 -1.6211 26 1 -0.6189 -5.7599 -0.4492 27 1 0.8858 -6.5584 1.4386 28 1 2.6418 -7.7673 2.3983 29 1 5.1749 -7.5603 1.1671 30 1 5.1726 -6.5330 2.6207 31 1 6.0077 -8.8085 3.1417 32 1 2.6581 -3.5352 1.1561 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455914644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:50 Heat of formation + Delta-G solvation = -135.463566 kcal Electronic energy + Delta-G solvation = -19786.885386 eV Core-core repulsion = 16188.816471 eV Total energy + Delta-G solvation = -3598.068915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.96246 -47.96242 -41.46565 -39.19955 -36.36492 -35.89695 -34.80048 -31.72045 -31.04140 -29.21493 -27.22021 -24.41253 -23.10812 -22.69034 -21.78157 -19.76680 -19.48244 -18.41339 -18.37132 -17.63138 -17.13091 -16.77219 -16.55471 -16.38034 -15.86963 -15.32422 -15.05046 -14.85161 -14.66321 -14.34620 -14.15951 -13.88303 -13.53575 -13.41480 -12.97411 -12.88459 -12.83006 -12.17136 -12.09002 -12.02542 -11.51932 -11.25773 -11.10276 -10.78900 -10.30926 -9.30694 -8.71843 -8.50916 -6.38758 0.91561 1.01259 1.37711 1.46644 1.52959 1.56351 2.11634 2.24460 2.72739 2.80350 3.16784 3.29919 3.59731 3.70863 3.93688 4.46932 4.52008 4.54498 4.61787 5.02661 5.08339 5.14002 5.14829 5.23190 5.34402 5.66769 5.82955 6.02388 6.08879 6.15379 6.37854 6.70560 6.96405 6.97279 7.02543 7.50261 8.43354 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027285 B = 0.004077 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.969152 B = 6866.409838 C = 7618.571726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.089 3.911 10 C -0.183 4.183 11 C -0.094 4.094 12 C -0.239 4.239 13 C 0.169 3.831 14 N -0.669 5.669 15 C 0.699 3.301 16 O -0.613 6.613 17 N -0.732 5.732 18 C 0.081 3.919 19 C 0.264 3.736 20 F -0.214 7.214 21 F -0.212 7.212 22 C -0.226 4.226 23 H 0.286 0.714 24 H 0.102 0.898 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.418 0.582 28 H 0.412 0.588 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.176 0.824 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -15.229 5.824 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.185 1.185 6 H -0.189 1.189 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.087 3.913 10 C -0.203 4.203 11 C -0.113 4.113 12 C -0.260 4.260 13 C 0.075 3.925 14 N -0.318 5.318 15 C 0.399 3.601 16 O -0.492 6.492 17 N -0.390 5.390 18 C -0.044 4.044 19 C 0.210 3.790 20 F -0.195 7.195 21 F -0.193 7.193 22 C -0.248 4.248 23 H 0.096 0.904 24 H 0.120 0.880 25 H 0.144 0.856 26 H 0.152 0.848 27 H 0.256 0.744 28 H 0.248 0.752 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.193 0.807 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.245 -14.478 5.423 16.674 hybrid contribution -0.386 0.302 0.430 0.651 sum 5.860 -14.177 5.852 16.418 Atomic orbital electron populations 1.69832 1.08464 1.30058 1.38268 1.26640 0.95754 1.03986 0.91437 0.85135 0.78905 0.76344 0.79105 1.18973 1.18479 1.18870 1.19710 0.94516 0.91678 1.47934 0.92051 1.17832 0.92414 0.92318 0.88774 1.21312 0.99191 0.97223 1.02552 1.20863 0.98981 0.92444 0.99015 1.20514 1.00460 0.99430 1.05622 1.17304 0.95477 0.84609 0.95067 1.42317 1.05653 1.24090 1.59715 1.16061 0.82692 0.81593 0.79728 1.90967 1.54983 1.49510 1.53745 1.44713 1.08600 1.30598 1.55091 1.22578 0.81360 0.98163 1.02250 1.22569 0.98144 0.82089 0.76175 1.93002 1.87392 1.95154 1.43957 1.92999 1.87481 1.55507 1.83345 1.21050 1.03491 0.93260 1.06949 0.90370 0.88027 0.85621 0.84814 0.74437 0.75178 0.88097 0.88587 0.80688 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.72 10.97 21.82 0.24 -45.48 16 2 C 0.03 1.84 5.31 85.25 0.45 2.29 16 3 Si 0.98 40.97 29.56 68.60 2.03 43.00 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.51 -29.86 9.04 23.46 0.21 -29.65 16 8 H 0.06 3.63 7.85 -2.91 -0.02 3.61 16 9 C 0.09 5.18 5.50 -21.31 -0.12 5.07 16 10 C -0.18 -9.90 8.62 22.75 0.20 -9.70 16 11 C -0.09 -4.29 10.02 22.20 0.22 -4.07 16 12 C -0.24 -9.99 9.97 22.58 0.23 -9.76 16 13 C 0.17 7.66 6.25 38.09 0.24 7.89 16 14 N -0.67 -23.30 5.34 -317.34 -1.70 -25.00 16 15 C 0.70 24.94 8.28 179.05 1.48 26.42 16 16 O -0.61 -28.30 14.13 -3.98 -0.06 -28.36 16 17 N -0.73 -17.63 5.42 -478.54 -2.59 -20.23 16 18 C 0.08 1.49 5.91 86.38 0.51 2.00 16 19 C 0.26 3.14 5.42 71.98 0.39 3.53 16 20 F -0.21 -3.57 17.20 44.97 0.77 -2.80 16 21 F -0.21 -3.35 17.20 44.97 0.77 -2.58 16 22 C -0.23 -12.29 8.39 22.85 0.19 -12.10 16 23 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 24 H 0.10 5.73 6.48 -2.91 -0.02 5.71 16 25 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 26 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 27 H 0.42 10.58 8.84 -92.71 -0.82 9.76 16 28 H 0.41 7.71 8.38 -92.71 -0.78 6.93 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.18 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 4.91 6.51 -2.91 -0.02 4.89 16 Total: -1.00 -74.66 290.73 3.06 -71.60 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.41 Total: 27.92 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 4.00 Total: -18.08 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -4.05 Total: -90.70 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.06 Total: -28.36 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 1.55 Total: -5.37 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -74.66 3.06 -71.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455914644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.862 kcal (2) G-P(sol) polarization free energy of solvation -74.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds