Wall clock time and date at job start Mon Mar 30 2020 00:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.50696 * 109.47264 * 239.99706 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99677 * 4 2 1 6 6 C 1.37876 * 120.00339 * 59.99823 * 4 2 1 7 7 N 1.31514 * 119.99769 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47118 * 89.99790 * 8 6 4 10 10 H 1.48499 * 109.47134 * 210.00310 * 8 6 4 11 11 H 1.48507 * 109.46904 * 330.00133 * 8 6 4 12 12 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 13 13 N 1.46506 * 109.47035 * 300.00027 * 12 2 1 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 2 15 15 O 1.21704 * 120.00041 * 0.02562 * 14 13 12 16 16 C 1.46666 * 119.99958 * 180.02562 * 14 13 12 17 17 C 1.37896 * 126.21972 * 179.69097 * 16 14 13 18 18 C 1.39895 * 107.09198 * 179.88599 * 17 16 14 19 19 Cl 1.73599 * 126.07553 * 180.15053 * 18 17 16 20 20 C 1.35513 * 107.85201 * 0.38176 * 18 17 16 21 21 N 1.35638 * 108.85164 * 359.76232 * 20 18 17 22 22 H 0.97000 * 125.67157 * 180.02562 * 21 20 18 23 23 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 24 24 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 25 25 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 28 28 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 29 29 H 0.97000 * 120.00540 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46930 * 180.02562 * 12 2 1 31 31 H 1.09000 * 109.47312 * 60.00201 * 12 2 1 32 32 H 0.96999 * 120.00080 * 0.02562 * 13 12 2 33 33 H 1.07994 * 126.45486 * 0.02562 * 17 16 14 34 34 H 1.08003 * 125.57822 * 179.78496 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.3429 -2.1620 -4.4117 10 1 2.4867 -0.1417 -5.1122 11 1 3.6294 -1.7586 -3.7120 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0304 2.4455 14 6 1.8767 -0.4911 3.6696 15 8 2.5764 -1.4806 3.7814 16 6 1.3873 0.2001 4.8671 17 6 1.6347 -0.1612 6.1747 18 6 0.9819 0.7703 6.9891 19 17 0.9726 0.7812 8.7250 20 6 0.3538 1.6596 6.1822 21 7 0.5927 1.3236 4.8900 22 1 0.2593 1.7968 4.1116 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 0.7095 1.1616 -3.4845 30 1 3.1300 -0.7208 1.2496 31 1 1.6767 -1.7488 1.2494 32 1 0.9936 0.7580 2.3564 33 1 2.2236 -1.0031 6.5074 34 1 -0.2397 2.4988 6.5137 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457991590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:32 Heat of formation + Delta-G solvation = -26.909535 kcal Electronic energy + Delta-G solvation = -18223.801547 eV Core-core repulsion = 15182.236569 eV Total energy + Delta-G solvation = -3041.564979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.39918 -40.31557 -38.12771 -37.31814 -35.12163 -32.90576 -31.91524 -30.40426 -27.58955 -27.50380 -26.82129 -23.77802 -21.71237 -21.27650 -20.70039 -20.07064 -17.89817 -17.07635 -16.74959 -16.54810 -16.29336 -15.46149 -15.35686 -14.93416 -14.72114 -14.41250 -14.33616 -14.01956 -13.88476 -13.22948 -13.12301 -12.79403 -12.70189 -12.61563 -12.27771 -12.15352 -11.79367 -11.51653 -11.42878 -11.11239 -10.72980 -10.41877 -10.14434 -9.91619 -9.26758 -8.04251 -6.19519 0.33383 1.23877 1.42099 1.45245 1.45634 1.53289 2.02294 2.26387 2.33237 2.48393 3.19981 3.81152 4.08406 4.19149 4.37002 4.48187 4.57837 4.68581 4.87151 4.96291 5.01171 5.06200 5.16650 5.26866 5.35708 5.48726 5.57391 5.64930 5.66521 6.13651 6.18575 6.30113 6.41610 6.55868 6.84188 7.12933 7.48454 8.94651 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.053510 B = 0.003533 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.143752 B = 7923.992902 C = 8256.076455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.531 4.531 5 H 0.045 0.955 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.147 3.853 13 N -0.705 5.705 14 C 0.579 3.421 15 O -0.579 6.579 16 C -0.054 4.054 17 C -0.108 4.108 18 C -0.148 4.148 19 Cl -0.046 7.046 20 C 0.072 3.928 21 N -0.515 5.515 22 H 0.439 0.561 23 H 0.038 0.962 24 H 0.064 0.936 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.260 0.740 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.405 0.595 33 H 0.145 0.855 34 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 6.215 16.265 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.023 3.977 13 N -0.355 5.355 14 C 0.368 3.632 15 O -0.459 6.459 16 C -0.168 4.168 17 C -0.136 4.136 18 C -0.181 4.181 19 Cl -0.017 7.017 20 C -0.067 4.067 21 N -0.113 5.113 22 H 0.280 0.720 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.242 0.758 33 H 0.163 0.837 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.028 5.684 16.113 17.554 hybrid contribution 0.145 -0.226 -1.310 1.337 sum -3.882 5.459 14.803 16.248 Atomic orbital electron populations 1.21685 0.96972 0.98778 1.00486 1.18360 0.93335 0.93081 0.90110 1.21682 0.98023 0.97726 1.00487 1.21280 1.31807 1.12250 0.91581 0.93701 1.25415 0.95123 0.95561 1.00876 1.69885 1.36967 1.23167 1.23644 0.85784 0.78672 0.78518 0.79985 1.20538 1.20842 1.20132 1.21365 0.97333 0.95257 0.83712 1.45946 1.52672 1.31791 1.05135 1.17379 0.79859 0.83417 0.82574 1.90806 1.40407 1.27829 1.86901 1.20016 1.07353 0.95316 0.94112 1.21232 1.01919 1.00558 0.89862 1.20026 1.10261 1.02199 0.85621 1.98322 1.98095 1.98426 1.06873 1.22392 1.01925 1.01224 0.81172 1.41954 1.38383 1.21904 1.09049 0.71967 0.94327 0.91750 0.96309 0.96298 0.91746 0.94327 0.92992 0.93928 0.93907 0.75777 0.83705 0.75936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 8.08 71.98 0.58 -4.52 16 2 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 3 C -0.12 -5.10 8.08 71.98 0.58 -4.51 16 4 C -0.53 -27.39 8.01 25.60 0.21 -27.18 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -46.46 9.35 21.45 0.20 -46.26 16 8 Si 0.94 41.82 29.54 68.60 2.03 43.85 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 C 0.15 6.03 4.50 86.38 0.39 6.42 16 13 N -0.70 -23.03 4.95 -467.06 -2.31 -25.34 16 14 C 0.58 19.73 7.79 86.44 0.67 20.41 16 15 O -0.58 -24.65 16.88 -4.36 -0.07 -24.73 16 16 C -0.05 -1.42 7.05 40.35 0.28 -1.14 16 17 C -0.11 -2.80 10.65 22.59 0.24 -2.56 16 18 C -0.15 -3.00 6.66 22.04 0.15 -2.85 16 19 Cl -0.05 -0.85 29.30 -2.72 -0.08 -0.92 16 20 C 0.07 1.03 11.87 83.47 0.99 2.02 16 21 N -0.52 -8.65 6.00 -183.50 -1.10 -9.75 16 22 H 0.44 4.91 8.19 -92.71 -0.76 4.15 16 23 H 0.04 1.30 6.86 -2.39 -0.02 1.28 16 24 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 25 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 28 H 0.04 1.30 6.86 -2.39 -0.02 1.28 16 29 H 0.26 13.01 8.31 -92.71 -0.77 12.24 16 30 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.41 10.78 5.29 -92.71 -0.49 10.29 16 33 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 34 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -62.61 299.77 3.05 -59.56 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -0.11 Total: 13.26 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 4.50 Total: -9.66 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -3.21 Total: -81.35 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.07 Total: -24.73 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.92 kcal Total: -62.61 3.05 -59.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457991590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.649 kcal (2) G-P(sol) polarization free energy of solvation -62.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds