Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00168 * 2 1 4 4 H 1.48503 * 109.47494 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47256 * 300.00170 * 3 2 1 6 6 H 1.48504 * 109.47032 * 60.00413 * 3 2 1 7 7 C 1.37883 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99370 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00282 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47487 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00228 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00195 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00056 * 180.02562 * 11 10 9 14 14 C 1.39945 * 119.99970 * 185.31431 * 13 11 10 15 15 C 1.38885 * 120.07048 * 33.27031 * 14 13 11 16 16 C 1.38092 * 119.93133 * 179.97438 * 15 14 13 17 17 C 1.38305 * 120.06440 * 0.26859 * 16 15 14 18 18 C 1.38260 * 120.14268 * 359.44817 * 17 16 15 19 19 C 1.50707 * 119.96469 * 180.27362 * 18 17 16 20 20 F 1.39897 * 109.46718 * 120.28115 * 19 18 17 21 21 F 1.39896 * 109.46851 * 240.27960 * 19 18 17 22 22 C 1.38131 * 120.06991 * 0.55564 * 18 17 16 23 23 H 0.96997 * 119.99914 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47078 * 59.99930 * 9 7 2 25 25 H 1.08997 * 109.47306 * 299.99991 * 9 7 2 26 26 H 0.96998 * 119.99548 * 0.02562 * 10 9 7 27 27 H 0.97001 * 119.99851 * 5.31179 * 13 11 10 28 28 H 1.08002 * 120.03274 * 359.97438 * 15 14 13 29 29 H 1.07997 * 119.96890 * 179.97438 * 16 15 14 30 30 H 1.08005 * 119.92798 * 179.72811 * 17 16 15 31 31 H 1.08997 * 109.46853 * 0.28096 * 19 18 17 32 32 H 1.07998 * 120.03947 * 179.73768 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0018 11 6 1.7538 -4.8834 -0.0025 12 8 0.5584 -5.1056 -0.0017 13 7 2.6296 -5.9079 -0.0031 14 6 2.1670 -7.2238 -0.1161 15 6 1.0376 -7.5017 -0.8752 16 6 0.5840 -8.8013 -0.9852 17 6 1.2499 -9.8249 -0.3359 18 6 2.3779 -9.5524 0.4157 19 6 3.1040 -10.6717 1.1165 20 9 4.4216 -10.7363 0.6508 21 9 3.1078 -10.4339 2.4951 22 6 2.8367 -8.2545 0.5297 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 3.1567 -3.4355 -0.0021 27 1 3.5805 -5.7330 0.0747 28 1 0.5147 -6.7021 -1.3789 29 1 -0.2944 -9.0180 -1.5749 30 1 0.8906 -10.8400 -0.4199 31 1 2.5997 -11.6160 0.9120 32 1 3.7154 -8.0416 1.1204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488314981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = -108.824701 kcal Electronic energy + Delta-G solvation = -19467.107996 eV Core-core repulsion = 15870.194229 eV Total energy + Delta-G solvation = -3596.913767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.14672 -47.13437 -40.32896 -38.54439 -34.83374 -34.18929 -32.46341 -31.80060 -29.82563 -27.10357 -26.19967 -23.36717 -22.41380 -21.79621 -20.21106 -18.35818 -18.04710 -17.40940 -17.35850 -16.29225 -16.20358 -15.73781 -15.20561 -14.82309 -14.34206 -14.16836 -14.07882 -13.75349 -13.51207 -13.25573 -13.03589 -12.84563 -12.15185 -12.05765 -11.95973 -11.62392 -11.15253 -10.98631 -10.96716 -10.36249 -10.27713 -9.60519 -9.43109 -9.06522 -8.81323 -8.23529 -7.83570 -6.21510 -4.28645 1.08800 1.25104 3.01558 3.20936 3.28559 3.31538 3.43040 3.55579 3.86552 3.97303 4.27504 4.40000 4.75268 4.86984 4.92490 4.96829 5.15051 5.25307 5.41587 5.56233 5.72202 6.13280 6.27094 6.36586 6.51412 6.93706 7.03177 7.31825 7.43633 7.45984 7.75157 7.92933 8.61309 8.76902 9.09874 9.38368 10.88687 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.039462 B = 0.003281 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.374311 B = 8532.088546 C = 8945.754483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.265 3.735 10 N -0.720 5.720 11 C 0.690 3.310 12 O -0.582 6.582 13 N -0.696 5.696 14 C 0.184 3.816 15 C -0.101 4.101 16 C -0.101 4.101 17 C -0.114 4.114 18 C -0.154 4.154 19 C 0.315 3.685 20 F -0.202 7.202 21 F -0.201 7.201 22 C -0.119 4.119 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.389 0.611 27 H 0.405 0.595 28 H 0.145 0.855 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.427 -20.164 -0.834 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.144 3.856 10 N -0.371 5.371 11 C 0.391 3.609 12 O -0.459 6.459 13 N -0.344 5.344 14 C 0.087 3.913 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.133 4.133 18 C -0.156 4.156 19 C 0.262 3.738 20 F -0.183 7.183 21 F -0.182 7.182 22 C -0.140 4.140 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.222 0.778 27 H 0.240 0.760 28 H 0.162 0.838 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.135 0.865 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.178 -20.052 -0.815 20.726 hybrid contribution 1.435 1.208 0.199 1.886 sum 6.613 -18.843 -0.616 19.980 Atomic orbital electron populations 1.69983 1.06104 1.27303 1.48767 1.24948 0.94936 0.99476 0.94632 0.86334 0.79788 0.82831 0.77790 1.19634 1.20755 1.20760 1.21237 0.93345 0.90287 1.53386 0.91796 1.19082 0.87714 0.80883 0.97904 1.45799 1.11237 1.04100 1.75984 1.16154 0.85100 0.81059 0.78636 1.90897 1.13822 1.83740 1.57481 1.42869 1.10148 1.03614 1.77723 1.17452 0.95503 0.83245 0.95097 1.21478 0.96154 0.97513 0.97002 1.21018 0.99699 0.91937 0.99325 1.20805 0.94788 0.99721 0.98027 1.19983 0.98739 0.94012 1.02833 1.20392 0.79514 0.98637 0.75278 1.93007 1.39326 1.97553 1.88422 1.93020 1.96540 1.96136 1.32482 1.20599 1.01922 0.91537 0.99943 0.92420 0.95412 0.95434 0.77807 0.76010 0.83764 0.85070 0.85515 0.86493 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -14.48 9.28 -34.44 -0.32 -14.80 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.26 6.88 5.43 -5.20 -0.03 6.85 16 10 N -0.72 -14.79 5.55 -66.42 -0.37 -15.16 16 11 C 0.69 13.74 8.30 -86.92 -0.72 13.02 16 12 O -0.58 -13.78 14.03 5.29 0.07 -13.71 16 13 N -0.70 -10.49 5.35 -14.22 -0.08 -10.56 16 14 C 0.18 2.69 6.28 -83.69 -0.53 2.17 16 15 C -0.10 -1.49 8.66 -39.40 -0.34 -1.83 16 16 C -0.10 -1.17 10.04 -39.61 -0.40 -1.56 16 17 C -0.11 -1.13 9.67 -39.55 -0.38 -1.51 16 18 C -0.15 -1.70 5.37 -104.65 -0.56 -2.26 16 19 C 0.32 2.91 5.45 36.01 0.20 3.10 16 20 F -0.20 -2.15 17.26 2.25 0.04 -2.11 16 21 F -0.20 -2.28 17.26 2.25 0.04 -2.24 16 22 C -0.12 -1.50 9.51 -39.40 -0.37 -1.87 16 23 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.39 6.75 8.34 -40.82 -0.34 6.40 16 27 H 0.40 4.68 8.83 -40.82 -0.36 4.32 16 28 H 0.14 2.45 6.41 -52.49 -0.34 2.11 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.13 0.82 7.94 -52.48 -0.42 0.40 16 31 H 0.12 0.63 7.87 -51.93 -0.41 0.22 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 294.73 15.07 4.44 4.44 Total: -1.00 -32.42 294.73 -6.78 -39.19 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -3.09 Total: 6.60 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -3.55 Total: 2.95 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.29 Total: -50.67 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.07 Total: -13.71 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.08 Total: -4.35 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.42 -6.78 -39.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488314981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.632 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds