Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00168 * 2 1 4 4 H 1.48503 * 109.47494 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47256 * 300.00170 * 3 2 1 6 6 H 1.48504 * 109.47032 * 60.00413 * 3 2 1 7 7 C 1.37883 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99370 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00282 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47487 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00228 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00195 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00056 * 180.02562 * 11 10 9 14 14 C 1.39945 * 119.99970 * 185.31431 * 13 11 10 15 15 C 1.38885 * 120.07048 * 33.27031 * 14 13 11 16 16 C 1.38092 * 119.93133 * 179.97438 * 15 14 13 17 17 C 1.38305 * 120.06440 * 0.26859 * 16 15 14 18 18 C 1.38260 * 120.14268 * 359.44817 * 17 16 15 19 19 C 1.50707 * 119.96469 * 180.27362 * 18 17 16 20 20 F 1.39897 * 109.46718 * 120.28115 * 19 18 17 21 21 F 1.39896 * 109.46851 * 240.27960 * 19 18 17 22 22 C 1.38131 * 120.06991 * 0.55564 * 18 17 16 23 23 H 0.96997 * 119.99914 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47078 * 59.99930 * 9 7 2 25 25 H 1.08997 * 109.47306 * 299.99991 * 9 7 2 26 26 H 0.96998 * 119.99548 * 0.02562 * 10 9 7 27 27 H 0.97001 * 119.99851 * 5.31179 * 13 11 10 28 28 H 1.08002 * 120.03274 * 359.97438 * 15 14 13 29 29 H 1.07997 * 119.96890 * 179.97438 * 16 15 14 30 30 H 1.08005 * 119.92798 * 179.72811 * 17 16 15 31 31 H 1.08997 * 109.46853 * 0.28096 * 19 18 17 32 32 H 1.07998 * 120.03947 * 179.73768 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0018 11 6 1.7538 -4.8834 -0.0025 12 8 0.5584 -5.1056 -0.0017 13 7 2.6296 -5.9079 -0.0031 14 6 2.1670 -7.2238 -0.1161 15 6 1.0376 -7.5017 -0.8752 16 6 0.5840 -8.8013 -0.9852 17 6 1.2499 -9.8249 -0.3359 18 6 2.3779 -9.5524 0.4157 19 6 3.1040 -10.6717 1.1165 20 9 4.4216 -10.7363 0.6508 21 9 3.1078 -10.4339 2.4951 22 6 2.8367 -8.2545 0.5297 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 3.1567 -3.4355 -0.0021 27 1 3.5805 -5.7330 0.0747 28 1 0.5147 -6.7021 -1.3789 29 1 -0.2944 -9.0180 -1.5749 30 1 0.8906 -10.8400 -0.4199 31 1 2.5997 -11.6160 0.9120 32 1 3.7154 -8.0416 1.1204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488314981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = -131.294815 kcal Electronic energy + Delta-G solvation = -19468.082374 eV Core-core repulsion = 15870.194229 eV Total energy + Delta-G solvation = -3597.888144 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.90853 -47.91082 -41.67967 -39.78482 -36.40346 -35.84156 -34.41076 -32.76423 -31.04109 -28.99953 -27.03959 -25.11333 -23.46399 -23.15988 -21.67435 -19.92472 -19.13764 -18.24658 -18.12612 -18.00127 -17.34136 -17.06733 -16.61911 -16.46443 -15.83958 -15.51292 -14.98705 -14.86044 -14.71631 -14.29714 -14.22985 -14.07754 -13.95281 -13.70284 -13.01060 -12.88767 -12.76861 -12.48233 -12.23405 -12.01983 -11.54562 -11.47276 -11.20005 -10.83860 -10.05265 -9.97967 -9.13279 -8.30610 -6.46985 0.11610 0.27051 1.43009 1.44488 1.56689 1.65397 2.02345 2.37581 2.69500 2.80913 3.04902 3.30434 3.33524 3.69249 3.94973 4.14245 4.22713 4.24678 4.42334 4.54853 4.79644 5.00956 5.21488 5.22953 5.25198 5.39839 5.40670 5.48971 5.59644 5.80414 5.94420 6.11249 6.63767 7.09909 7.23075 7.52556 8.81833 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.039462 B = 0.003281 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.374311 B = 8532.088546 C = 8945.754483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.284 3.716 10 N -0.714 5.714 11 C 0.692 3.308 12 O -0.624 6.624 13 N -0.677 5.677 14 C 0.152 3.848 15 C -0.128 4.128 16 C -0.102 4.102 17 C -0.094 4.094 18 C -0.159 4.159 19 C 0.315 3.685 20 F -0.211 7.211 21 F -0.215 7.215 22 C -0.121 4.121 23 H 0.269 0.731 24 H -0.009 1.009 25 H -0.011 1.011 26 H 0.407 0.593 27 H 0.422 0.578 28 H 0.111 0.889 29 H 0.155 0.845 30 H 0.175 0.825 31 H 0.169 0.831 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.158 -21.979 -0.729 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.368 5.368 11 C 0.392 3.608 12 O -0.505 6.505 13 N -0.326 5.326 14 C 0.057 3.943 15 C -0.149 4.149 16 C -0.121 4.121 17 C -0.113 4.113 18 C -0.160 4.160 19 C 0.262 3.738 20 F -0.192 7.192 21 F -0.196 7.196 22 C -0.142 4.142 23 H 0.078 0.922 24 H 0.009 0.991 25 H 0.007 0.993 26 H 0.243 0.757 27 H 0.260 0.740 28 H 0.129 0.871 29 H 0.172 0.828 30 H 0.192 0.808 31 H 0.186 0.814 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.987 -21.929 -0.710 23.026 hybrid contribution 0.857 1.591 0.150 1.813 sum 7.844 -20.338 -0.560 21.806 Atomic orbital electron populations 1.70139 1.08223 1.28575 1.49856 1.26046 0.95788 1.03824 0.93831 0.85092 0.79031 0.77282 0.77684 1.17714 1.20414 1.20485 1.21617 0.94358 0.90379 1.53007 0.89778 1.18497 0.88021 0.83004 0.94377 1.45348 1.11318 1.03475 1.76624 1.16232 0.85027 0.81497 0.78024 1.90865 1.16053 1.84442 1.59144 1.42485 1.10287 1.03014 1.76777 1.17661 0.96654 0.83020 0.97014 1.21428 0.96796 0.98437 0.98242 1.21325 1.00422 0.90857 0.99452 1.21295 0.93227 1.01363 0.95381 1.20388 0.99117 0.93918 1.02620 1.20843 0.79129 0.99762 0.74095 1.92992 1.40189 1.97586 1.88457 1.92997 1.96561 1.96324 1.33702 1.20761 1.01966 0.91914 0.99546 0.92180 0.99097 0.99298 0.75715 0.73988 0.87115 0.82767 0.80757 0.81438 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.99 42.01 29.54 68.60 2.03 44.04 16 4 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.56 -29.97 9.28 25.60 0.24 -29.74 16 8 H 0.08 4.10 7.60 -2.91 -0.02 4.07 16 9 C 0.28 15.53 5.43 85.63 0.46 16.00 16 10 N -0.71 -30.40 5.55 -482.31 -2.68 -33.08 16 11 C 0.69 28.82 8.30 179.05 1.49 30.31 16 12 O -0.62 -31.52 14.03 -3.98 -0.06 -31.58 16 13 N -0.68 -20.83 5.35 -317.18 -1.70 -22.53 16 14 C 0.15 4.48 6.28 38.15 0.24 4.72 16 15 C -0.13 -3.90 8.66 22.39 0.19 -3.71 16 16 C -0.10 -2.19 10.04 22.25 0.22 -1.96 16 17 C -0.09 -1.51 9.67 22.29 0.22 -1.29 16 18 C -0.16 -3.02 5.37 -19.88 -0.11 -3.13 16 19 C 0.31 4.60 5.45 71.24 0.39 4.99 16 20 F -0.21 -3.86 17.26 44.97 0.78 -3.09 16 21 F -0.21 -4.28 17.26 44.97 0.78 -3.51 16 22 C -0.12 -2.90 9.51 22.39 0.21 -2.68 16 23 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 26 H 0.41 14.14 8.34 -92.71 -0.77 13.37 16 27 H 0.42 9.66 8.83 -92.71 -0.82 8.84 16 28 H 0.11 4.09 6.41 -2.91 -0.02 4.07 16 29 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 30 H 0.18 1.15 7.94 -2.91 -0.02 1.13 16 31 H 0.17 0.83 7.87 -2.39 -0.02 0.81 16 32 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -74.50 294.73 3.04 -71.46 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.41 Total: 19.39 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 4.02 Total: 14.24 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -4.09 Total: -110.97 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.06 Total: -31.58 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 1.55 Total: -6.59 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -74.50 3.04 -71.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488314981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.835 kcal (2) G-P(sol) polarization free energy of solvation -74.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds