Wall clock time and date at job start Mon Mar 30 2020 01:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46826 * 148.07624 * 3 2 1 5 5 C 1.36877 * 119.99816 * 263.85306 * 4 3 2 6 6 H 1.07996 * 120.00108 * 205.67077 * 5 4 3 7 7 C 1.39044 * 119.99780 * 25.67064 * 5 4 3 8 8 N 1.31365 * 120.00192 * 14.97969 * 7 5 4 9 9 Si 1.86804 * 119.99766 * 194.97330 * 7 5 4 10 10 H 1.48501 * 109.46780 * 90.00219 * 9 7 5 11 11 H 1.48495 * 109.46936 * 210.00140 * 9 7 5 12 12 H 1.48504 * 109.47150 * 330.00312 * 9 7 5 13 13 C 1.34770 * 120.00334 * 83.85345 * 4 3 2 14 14 O 1.21636 * 119.99773 * 5.08848 * 13 4 3 15 15 C 1.47397 * 120.00275 * 184.81407 * 13 4 3 16 16 C 1.39339 * 120.25275 * 39.02598 * 15 13 4 17 17 C 1.38418 * 120.26737 * 179.72909 * 16 15 13 18 18 C 1.37660 * 120.80860 * 0.57559 * 17 16 15 19 19 C 1.40106 * 120.16263 * 359.69783 * 18 17 16 20 20 N 1.35395 * 133.02716 * 180.02562 * 19 18 17 21 21 N 1.28662 * 110.10644 * 179.97438 * 20 19 18 22 22 N 1.40251 * 109.42566 * 0.02562 * 21 20 19 23 23 H 0.97001 * 126.66267 * 180.02562 * 22 21 20 24 24 C 1.36970 * 106.67262 * 359.97438 * 22 21 20 25 25 H 4.40646 * 5.51511 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.47459 * 28.07735 * 3 2 1 27 27 H 1.08996 * 109.47237 * 268.07240 * 3 2 1 28 28 H 0.97000 * 120.00323 * 180.02562 * 8 7 5 29 29 H 1.07994 * 119.85895 * 0.02562 * 16 15 13 30 30 H 1.07995 * 119.59283 * 180.27467 * 17 16 15 31 31 H 1.07998 * 119.91710 * 179.68447 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1732 -0.7304 5 6 3.4816 1.0619 -2.0496 6 1 4.1990 1.7458 -2.4784 7 6 2.9111 0.0683 -2.8374 8 7 1.8408 -0.5681 -2.4191 9 14 3.6668 -0.3615 -4.4908 10 1 4.6788 -1.4330 -4.3090 11 1 2.6037 -0.8359 -5.4126 12 1 4.3188 0.8429 -5.0652 13 6 3.2400 2.3615 -0.1035 14 8 3.0199 2.4412 1.0901 15 6 3.6288 3.5634 -0.8631 16 6 3.1416 3.7670 -2.1526 17 6 3.5021 4.8983 -2.8641 18 6 4.3533 5.8327 -2.3187 19 6 4.8630 5.6513 -1.0263 20 7 5.6973 6.3834 -0.2511 21 7 5.8757 5.7990 0.8812 22 7 5.1401 4.6053 0.9111 23 1 5.0943 3.9713 1.6438 24 6 4.4978 4.5092 -0.2949 25 1 -1.0503 -0.0002 0.0003 26 1 3.0098 -0.9059 -0.4837 27 1 3.0093 0.0354 1.0270 28 1 1.4430 -1.2615 -2.9685 29 1 2.4764 3.0415 -2.5968 30 1 3.1146 5.0473 -3.8610 31 1 4.6290 6.7076 -2.8886 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490964099.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:38 Heat of formation + Delta-G solvation = 127.128618 kcal Electronic energy + Delta-G solvation = -20029.026967 eV Core-core repulsion = 16893.034090 eV Total energy + Delta-G solvation = -3135.992877 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.10589 -40.69445 -38.16514 -37.09688 -34.52445 -33.80516 -33.35617 -31.46126 -31.02267 -28.31482 -26.85349 -25.13918 -23.99505 -23.36407 -21.42616 -20.06267 -19.11124 -18.69701 -18.17321 -17.55781 -16.68823 -16.52945 -16.25611 -15.99510 -15.85366 -15.29393 -14.76142 -14.22950 -13.92089 -13.56571 -13.34681 -13.12396 -12.99211 -12.92292 -12.74566 -12.49119 -12.25178 -12.20016 -12.03295 -11.22871 -11.20992 -10.62524 -10.48942 -9.92131 -9.79527 -9.32193 -8.26184 -5.99241 -0.64980 0.28818 0.99941 1.41050 1.47433 1.54004 1.63078 1.90846 2.07488 2.33642 2.43225 2.69330 2.98191 3.11089 3.20562 3.68692 3.88260 3.91617 4.00943 4.20602 4.30747 4.63357 4.73517 4.83533 4.94163 5.02182 5.34775 5.38812 5.43441 5.44360 5.69907 5.75528 5.92678 6.34634 6.85666 7.05090 7.15501 7.40356 7.82334 8.69729 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019248 B = 0.007473 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.336072 B = 3745.776188 C = 4638.083430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.144 4.144 3 C 0.243 3.757 4 N -0.426 5.426 5 C -0.360 4.360 6 H 0.111 0.889 7 C 0.010 3.990 8 N -0.868 5.868 9 Si 0.981 3.019 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.251 1.251 13 C 0.485 3.515 14 O -0.637 6.637 15 C -0.131 4.131 16 C -0.010 4.010 17 C -0.130 4.130 18 C -0.014 4.014 19 C -0.046 4.046 20 N -0.224 5.224 21 N -0.027 5.027 22 N -0.486 5.486 23 H 0.453 0.547 24 C 0.114 3.886 25 H 0.233 0.767 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.273 0.727 29 H 0.149 0.851 30 H 0.183 0.817 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 5.240 -4.856 7.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.145 4.145 3 C 0.121 3.879 4 N -0.140 5.140 5 C -0.487 4.487 6 H 0.128 0.872 7 C -0.196 4.196 8 N -0.503 5.503 9 Si 0.805 3.195 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.174 1.174 13 C 0.276 3.724 14 O -0.527 6.527 15 C -0.138 4.138 16 C -0.033 4.033 17 C -0.150 4.150 18 C -0.036 4.036 19 C -0.170 4.170 20 N -0.104 5.104 21 N -0.008 5.008 22 N -0.209 5.209 23 H 0.301 0.699 24 C -0.011 4.011 25 H 0.249 0.751 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.166 0.834 30 H 0.200 0.800 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.717 6.041 -3.606 7.542 hybrid contribution -0.734 -1.890 -0.315 2.052 sum 1.983 4.151 -3.921 6.045 Atomic orbital electron populations 1.25056 0.96291 1.00908 1.04792 1.23267 0.94890 0.99707 0.96679 1.17946 0.84878 0.90077 0.95007 1.43677 1.53864 1.05542 1.10965 1.19946 1.24536 1.19470 0.84708 0.87197 1.26113 0.94492 0.96512 1.02455 1.70124 1.17562 1.23245 1.39396 0.85089 0.77686 0.79332 0.77422 1.20681 1.21080 1.17435 1.18399 0.83325 0.83740 0.86931 1.90599 1.59356 1.86199 1.16530 1.18870 1.02838 0.95134 0.96963 1.21892 0.94569 0.96702 0.90107 1.21397 0.98902 0.92472 1.02241 1.20987 0.93070 1.00016 0.89555 1.20294 1.03965 0.93634 0.99146 1.74720 1.13179 1.23490 0.98994 1.81424 1.12656 0.92373 1.14347 1.47675 1.37741 1.20783 1.14746 0.69926 1.19353 0.96532 0.97520 0.87656 0.75087 0.88760 0.91517 0.91704 0.83354 0.80019 0.80585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.70 19.25 74.32 1.43 -9.26 16 2 C -0.14 -6.78 11.20 31.13 0.35 -6.43 16 3 C 0.24 11.37 5.11 84.57 0.43 11.81 16 4 N -0.43 -20.09 2.58 -649.18 -1.68 -21.77 16 5 C -0.36 -16.12 6.96 84.10 0.59 -15.53 16 6 H 0.11 4.69 6.13 -2.91 -0.02 4.67 16 7 C 0.01 0.44 4.97 84.96 0.42 0.86 16 8 N -0.87 -40.90 9.40 21.68 0.20 -40.70 16 9 Si 0.98 35.02 29.58 68.60 2.03 37.05 16 10 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 11 H -0.29 -10.29 7.11 99.48 0.71 -9.58 16 12 H -0.25 -8.31 7.11 99.48 0.71 -7.61 16 13 C 0.48 22.79 7.22 86.66 0.63 23.41 16 14 O -0.64 -32.61 16.16 -4.14 -0.07 -32.68 16 15 C -0.13 -5.23 5.19 -20.06 -0.10 -5.34 16 16 C -0.01 -0.34 7.71 22.58 0.17 -0.17 16 17 C -0.13 -3.15 9.98 22.18 0.22 -2.92 16 18 C -0.01 -0.35 10.09 22.59 0.23 -0.12 16 19 C -0.05 -1.53 7.26 39.59 0.29 -1.24 16 20 N -0.22 -7.76 12.40 -52.20 -0.65 -8.41 16 21 N -0.03 -0.95 13.83 37.02 0.51 -0.44 16 22 N -0.49 -17.75 7.46 -51.08 -0.38 -18.13 16 23 H 0.45 15.74 8.62 -213.22 -1.84 13.91 16 24 C 0.11 4.32 6.95 39.42 0.27 4.59 16 25 H 0.23 7.67 7.80 -4.40 -0.03 7.63 16 26 H 0.09 4.42 6.83 -2.39 -0.02 4.41 16 27 H 0.07 3.05 7.54 -2.39 -0.02 3.03 16 28 H 0.27 12.36 8.31 -92.71 -0.77 11.59 16 29 H 0.15 5.37 6.46 -2.91 -0.02 5.35 16 30 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.18 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -60.11 282.42 4.26 -55.85 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.64 Total: 29.58 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 4.92 Total: -0.35 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -1.99 Total: -89.44 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.07 Total: -32.68 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -60.11 4.26 -55.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490964099.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.976 kcal (2) G-P(sol) polarization free energy of solvation -60.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds