Wall clock time and date at job start Mon Mar 30 2020 01:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47242 * 93.91392 * 3 2 1 5 5 C 1.36698 * 119.99691 * 277.60407 * 4 3 2 6 6 H 1.08005 * 119.99898 * 178.11764 * 5 4 3 7 7 C 1.39136 * 120.00079 * 358.12755 * 5 4 3 8 8 N 1.31312 * 119.99931 * 27.09044 * 7 5 4 9 9 Si 1.86793 * 119.99995 * 207.09792 * 7 5 4 10 10 H 1.48503 * 109.47172 * 94.98993 * 9 7 5 11 11 H 1.48499 * 109.47259 * 214.99188 * 9 7 5 12 12 H 1.48499 * 109.47271 * 334.99258 * 9 7 5 13 13 C 1.34776 * 120.00559 * 97.60698 * 4 3 2 14 14 O 1.21696 * 120.00471 * 185.46176 * 13 4 3 15 15 C 1.46992 * 119.99668 * 5.45630 * 13 4 3 16 16 C 1.37933 * 119.95433 * 332.36911 * 15 13 4 17 17 C 1.39763 * 119.91773 * 179.97438 * 16 15 13 18 18 C 1.36372 * 119.83271 * 0.02562 * 17 16 15 19 19 C 1.40748 * 119.73381 * 0.24849 * 18 17 16 20 20 N 1.32830 * 132.73854 * 180.40106 * 19 18 17 21 21 C 1.32391 * 109.73808 * 179.56989 * 20 19 18 22 22 N 1.31384 * 109.61989 * 359.74912 * 21 20 19 23 23 N 1.36563 * 119.88175 * 359.48955 * 19 18 17 24 24 H 4.40639 * 5.51345 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47932 * 333.90975 * 3 2 1 26 26 H 1.09006 * 109.46949 * 213.90941 * 3 2 1 27 27 H 0.96996 * 119.99453 * 179.97438 * 8 7 5 28 28 H 1.07996 * 120.03733 * 359.97438 * 16 15 13 29 29 H 1.07996 * 120.08218 * 180.02562 * 17 16 15 30 30 H 1.08003 * 120.13328 * 179.97438 * 18 17 16 31 31 H 1.07999 * 125.18772 * 179.71594 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0952 -1.3780 5 6 3.2149 -1.0280 -2.1530 6 1 3.5460 -0.9539 -3.1784 7 6 2.8703 -2.2666 -1.6210 8 7 2.0042 -2.3403 -0.6368 9 14 3.6397 -3.8244 -2.3068 10 1 4.8197 -4.1966 -1.4856 11 1 2.6441 -4.9257 -2.2705 12 1 4.0670 -3.5895 -3.7094 13 6 3.5041 1.2893 -1.8816 14 8 3.8149 1.3854 -3.0543 15 6 3.5319 2.4759 -1.0144 16 6 2.6935 2.5500 0.0784 17 6 2.7209 3.6783 0.9027 18 6 3.5769 4.7024 0.6228 19 6 4.4236 4.6178 -0.4983 20 7 5.3406 5.4378 -0.9993 21 6 5.8816 4.8970 -2.0798 22 7 5.3393 3.7213 -2.3034 23 7 4.3912 3.5078 -1.2931 24 1 -1.0500 0.0002 0.0001 25 1 3.0099 -0.9221 0.4519 26 1 3.0089 0.8538 0.5734 27 1 1.7637 -3.2038 -0.2662 28 1 2.0166 1.7372 0.2966 29 1 2.0659 3.7390 1.7592 30 1 3.6018 5.5767 1.2564 31 1 6.6508 5.3529 -2.6854 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491020447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:41 Heat of formation + Delta-G solvation = 202.318204 kcal Electronic energy + Delta-G solvation = -20115.503788 eV Core-core repulsion = 16982.771376 eV Total energy + Delta-G solvation = -3132.732412 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27953 -39.40038 -36.99746 -35.63898 -33.08145 -32.69017 -31.65261 -30.54054 -29.60565 -26.82325 -25.67917 -23.74414 -23.07981 -22.11525 -19.65470 -18.33343 -17.71543 -16.92809 -16.84839 -16.09545 -15.74861 -15.69834 -14.92351 -14.33317 -14.27248 -13.96430 -13.28198 -13.17928 -12.69659 -12.32325 -12.04938 -11.82294 -11.47984 -11.29203 -10.88462 -10.81880 -10.62710 -10.49697 -9.74685 -9.69730 -9.61119 -9.23416 -9.03046 -8.68472 -8.34889 -7.86000 -6.77366 -4.05510 0.63775 1.27657 2.36638 2.84085 3.03376 3.08565 3.13689 3.41589 3.55056 3.65766 3.88728 4.00803 4.20931 4.34554 4.71493 4.78528 5.02573 5.09901 5.20400 5.29999 5.54376 5.62544 5.94375 6.02923 6.22344 6.46977 6.55655 6.59650 6.71243 6.77506 7.01954 7.17535 7.63236 8.06356 8.29342 8.54145 8.77091 8.92488 9.56379 10.18062 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.006642 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.789253 B = 4214.366180 C = 5100.245743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.121 4.121 3 C 0.184 3.816 4 N -0.402 5.402 5 C -0.299 4.299 6 H 0.119 0.881 7 C 0.036 3.964 8 N -0.833 5.833 9 Si 0.929 3.071 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.264 1.264 13 C 0.451 3.549 14 O -0.558 6.558 15 C 0.142 3.858 16 C -0.190 4.190 17 C -0.054 4.054 18 C -0.124 4.124 19 C 0.274 3.726 20 N -0.558 5.558 21 C 0.213 3.787 22 N -0.305 5.305 23 N -0.261 5.261 24 H 0.204 0.796 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.277 0.723 28 H 0.191 0.809 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 5.856 7.564 9.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.123 4.123 3 C 0.062 3.938 4 N -0.117 5.117 5 C -0.426 4.426 6 H 0.137 0.863 7 C -0.172 4.172 8 N -0.468 5.468 9 Si 0.754 3.246 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.188 1.188 13 C 0.241 3.759 14 O -0.442 6.442 15 C 0.029 3.971 16 C -0.214 4.214 17 C -0.080 4.080 18 C -0.147 4.147 19 C 0.021 3.979 20 N -0.289 5.289 21 C -0.088 4.088 22 N -0.134 5.134 23 N -0.037 5.037 24 H 0.221 0.779 25 H 0.136 0.864 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.207 0.793 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.306 5.621 6.475 8.580 hybrid contribution -0.174 -0.874 -0.127 0.900 sum -0.480 4.747 6.348 7.941 Atomic orbital electron populations 1.24386 0.95407 1.05008 1.00835 1.22618 0.93866 0.96335 0.99445 1.19541 0.84874 1.04419 0.85014 1.43696 1.51034 1.06119 1.10856 1.19980 1.41973 0.82537 0.98152 0.86349 1.25466 0.94914 1.00013 0.96798 1.70117 1.24452 1.26988 1.25258 0.85856 0.79106 0.79572 0.80092 1.19787 1.20617 1.18776 1.16925 0.89631 0.81797 0.87531 1.90753 1.54859 1.83212 1.15372 1.20647 0.90933 0.89529 0.95970 1.22647 1.02238 1.01859 0.94637 1.21158 0.96378 0.91556 0.98863 1.20227 0.96974 1.01710 0.95752 1.21847 0.96809 0.84716 0.94523 1.70752 1.13762 1.30616 1.13776 1.26207 0.98781 0.90149 0.93682 1.78972 1.06408 1.19400 1.08665 1.47601 1.24404 1.13141 1.18566 0.77897 0.86351 0.88544 0.91162 0.79281 0.83243 0.83034 0.76292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.30 19.25 29.55 0.57 -3.73 16 2 C -0.12 -2.41 9.38 -37.12 -0.35 -2.76 16 3 C 0.18 3.72 4.76 -6.83 -0.03 3.69 16 4 N -0.40 -9.73 2.60 -119.33 -0.31 -10.04 16 5 C -0.30 -7.75 9.39 -15.05 -0.14 -7.89 16 6 H 0.12 3.29 7.29 -52.48 -0.38 2.90 16 7 C 0.04 0.86 5.02 -17.44 -0.09 0.77 16 8 N -0.83 -19.31 8.83 55.51 0.49 -18.82 16 9 Si 0.93 18.85 29.63 -169.99 -5.04 13.81 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 11 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 12 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 13 C 0.45 11.33 7.47 -12.71 -0.09 11.23 16 14 O -0.56 -16.16 15.98 5.19 0.08 -16.08 16 15 C 0.14 3.01 6.53 -82.05 -0.54 2.47 16 16 C -0.19 -3.14 7.50 -39.12 -0.29 -3.43 16 17 C -0.05 -0.69 10.04 -39.68 -0.40 -1.08 16 18 C -0.12 -1.72 10.09 -39.31 -0.40 -2.12 16 19 C 0.27 5.03 7.88 -156.36 -1.23 3.79 16 20 N -0.56 -10.20 11.24 -13.99 -0.16 -10.36 16 21 C 0.21 3.78 12.98 -91.99 -1.19 2.58 16 22 N -0.30 -6.69 12.06 29.25 0.35 -6.34 16 23 N -0.26 -5.56 3.91 -8.82 -0.03 -5.59 16 24 H 0.20 2.90 7.80 -54.09 -0.42 2.48 16 25 H 0.12 2.50 6.19 -51.93 -0.32 2.18 16 26 H 0.10 1.66 4.06 -52.62 -0.21 1.45 16 27 H 0.28 6.06 8.31 -40.82 -0.34 5.72 16 28 H 0.19 3.07 2.81 -52.49 -0.15 2.93 16 29 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.22 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 276.51 15.07 4.17 4.17 Total: -1.00 -32.59 276.51 -6.52 -39.11 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -1.89 Total: 6.63 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -4.19 Total: 3.52 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.34 Total: -51.16 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.08 Total: -16.08 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.04 Total: 13.81 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.59 -6.52 -39.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491020447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.429 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds