Wall clock time and date at job start Mon Mar 30 2020 01:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47242 * 93.91392 * 3 2 1 5 5 C 1.36698 * 119.99691 * 277.60407 * 4 3 2 6 6 H 1.08005 * 119.99898 * 178.11764 * 5 4 3 7 7 C 1.39136 * 120.00079 * 358.12755 * 5 4 3 8 8 N 1.31312 * 119.99931 * 27.09044 * 7 5 4 9 9 Si 1.86793 * 119.99995 * 207.09792 * 7 5 4 10 10 H 1.48503 * 109.47172 * 94.98993 * 9 7 5 11 11 H 1.48499 * 109.47259 * 214.99188 * 9 7 5 12 12 H 1.48499 * 109.47271 * 334.99258 * 9 7 5 13 13 C 1.34776 * 120.00559 * 97.60698 * 4 3 2 14 14 O 1.21696 * 120.00471 * 185.46176 * 13 4 3 15 15 C 1.46992 * 119.99668 * 5.45630 * 13 4 3 16 16 C 1.37933 * 119.95433 * 332.36911 * 15 13 4 17 17 C 1.39763 * 119.91773 * 179.97438 * 16 15 13 18 18 C 1.36372 * 119.83271 * 0.02562 * 17 16 15 19 19 C 1.40748 * 119.73381 * 0.24849 * 18 17 16 20 20 N 1.32830 * 132.73854 * 180.40106 * 19 18 17 21 21 C 1.32391 * 109.73808 * 179.56989 * 20 19 18 22 22 N 1.31384 * 109.61989 * 359.74912 * 21 20 19 23 23 N 1.36563 * 119.88175 * 359.48955 * 19 18 17 24 24 H 4.40639 * 5.51345 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47932 * 333.90975 * 3 2 1 26 26 H 1.09006 * 109.46949 * 213.90941 * 3 2 1 27 27 H 0.96996 * 119.99453 * 179.97438 * 8 7 5 28 28 H 1.07996 * 120.03733 * 359.97438 * 16 15 13 29 29 H 1.07996 * 120.08218 * 180.02562 * 17 16 15 30 30 H 1.08003 * 120.13328 * 179.97438 * 18 17 16 31 31 H 1.07999 * 125.18772 * 179.71594 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0952 -1.3780 5 6 3.2149 -1.0280 -2.1530 6 1 3.5460 -0.9539 -3.1784 7 6 2.8703 -2.2666 -1.6210 8 7 2.0042 -2.3403 -0.6368 9 14 3.6397 -3.8244 -2.3068 10 1 4.8197 -4.1966 -1.4856 11 1 2.6441 -4.9257 -2.2705 12 1 4.0670 -3.5895 -3.7094 13 6 3.5041 1.2893 -1.8816 14 8 3.8149 1.3854 -3.0543 15 6 3.5319 2.4759 -1.0144 16 6 2.6935 2.5500 0.0784 17 6 2.7209 3.6783 0.9027 18 6 3.5769 4.7024 0.6228 19 6 4.4236 4.6178 -0.4983 20 7 5.3406 5.4378 -0.9993 21 6 5.8816 4.8970 -2.0798 22 7 5.3393 3.7213 -2.3034 23 7 4.3912 3.5078 -1.2931 24 1 -1.0500 0.0002 0.0001 25 1 3.0099 -0.9221 0.4519 26 1 3.0089 0.8538 0.5734 27 1 1.7637 -3.2038 -0.2662 28 1 2.0166 1.7372 0.2966 29 1 2.0659 3.7390 1.7592 30 1 3.6018 5.5767 1.2564 31 1 6.6508 5.3529 -2.6854 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491020447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:41 Heat of formation + Delta-G solvation = 181.641652 kcal Electronic energy + Delta-G solvation = -20116.400391 eV Core-core repulsion = 16982.771376 eV Total energy + Delta-G solvation = -3133.629014 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.68785 -41.07753 -38.44672 -37.44928 -34.53876 -34.31543 -33.30073 -31.96620 -31.04662 -28.43136 -27.37527 -25.20840 -24.48332 -23.55782 -21.28863 -20.00442 -19.08337 -18.50145 -18.38126 -17.66743 -17.20156 -17.10725 -16.55805 -15.98067 -15.95551 -15.35356 -14.85285 -14.59004 -14.30455 -13.76671 -13.67502 -13.27389 -13.09935 -12.78428 -12.55462 -12.23569 -12.15403 -12.11712 -11.37314 -11.18353 -11.14716 -10.80916 -10.65554 -10.43152 -10.12457 -9.27423 -8.55882 -5.98816 -0.70040 -0.03243 0.95317 1.27208 1.39744 1.49887 1.53275 1.87584 2.00915 2.19761 2.28610 2.44536 2.65678 2.91981 3.05259 3.43775 3.60131 3.83128 3.84593 4.01383 4.21666 4.39958 4.46170 4.86718 4.92705 5.02458 5.20308 5.30668 5.32603 5.35850 5.39997 5.62254 5.81440 6.24482 6.88597 6.91993 7.06364 7.13197 7.73886 8.38294 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.006642 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.789253 B = 4214.366180 C = 5100.245743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C 0.188 3.812 4 N -0.409 5.409 5 C -0.354 4.354 6 H 0.078 0.922 7 C 0.020 3.980 8 N -0.835 5.835 9 Si 0.985 3.015 10 H -0.263 1.263 11 H -0.265 1.265 12 H -0.281 1.281 13 C 0.438 3.562 14 O -0.619 6.619 15 C 0.093 3.907 16 C -0.154 4.154 17 C -0.037 4.037 18 C -0.098 4.098 19 C 0.255 3.745 20 N -0.565 5.565 21 C 0.220 3.780 22 N -0.371 5.371 23 N -0.276 5.276 24 H 0.240 0.760 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.285 0.715 28 H 0.196 0.804 29 H 0.214 0.786 30 H 0.200 0.800 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 7.183 10.992 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.166 4.166 3 C 0.067 3.933 4 N -0.124 5.124 5 C -0.481 4.481 6 H 0.096 0.904 7 C -0.188 4.188 8 N -0.469 5.469 9 Si 0.808 3.192 10 H -0.188 1.188 11 H -0.190 1.190 12 H -0.206 1.206 13 C 0.229 3.771 14 O -0.507 6.507 15 C -0.019 4.019 16 C -0.177 4.177 17 C -0.062 4.062 18 C -0.119 4.119 19 C 0.003 3.997 20 N -0.296 5.296 21 C -0.080 4.080 22 N -0.202 5.202 23 N -0.052 5.052 24 H 0.257 0.743 25 H 0.123 0.877 26 H 0.142 0.858 27 H 0.096 0.904 28 H 0.213 0.787 29 H 0.231 0.769 30 H 0.217 0.783 31 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -1.914 6.946 9.973 12.303 hybrid contribution 0.242 -1.079 -1.055 1.528 sum -1.672 5.867 8.918 10.805 Atomic orbital electron populations 1.25269 0.96269 1.02886 0.98643 1.22718 0.94210 0.98286 1.01388 1.19607 0.85693 1.04884 0.83082 1.43783 1.51120 1.05400 1.12051 1.19673 1.46139 0.84552 0.97741 0.90386 1.25988 0.94474 1.01257 0.97073 1.70152 1.23740 1.27878 1.25128 0.85062 0.78808 0.76773 0.78561 1.18804 1.18968 1.20643 1.17619 0.88725 0.83150 0.87559 1.90674 1.57163 1.84665 1.18201 1.20379 0.94307 0.89117 0.98091 1.22940 0.99281 1.02996 0.92475 1.21793 0.96271 0.88905 0.99265 1.21001 0.94203 1.03149 0.93574 1.22799 0.97602 0.83865 0.95436 1.70789 1.14140 1.30640 1.14013 1.26975 0.98506 0.88944 0.93558 1.78891 1.08437 1.21875 1.10987 1.47599 1.24692 1.13855 1.19095 0.74341 0.87727 0.85841 0.90426 0.78738 0.76882 0.78325 0.72433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.12 19.25 74.32 1.43 -5.69 16 2 C -0.16 -6.34 9.38 31.12 0.29 -6.05 16 3 C 0.19 7.66 4.76 84.57 0.40 8.07 16 4 N -0.41 -20.90 2.60 -649.66 -1.69 -22.59 16 5 C -0.35 -19.65 9.39 84.15 0.79 -18.86 16 6 H 0.08 4.82 7.29 -2.91 -0.02 4.80 16 7 C 0.02 0.99 5.02 84.99 0.43 1.41 16 8 N -0.83 -38.74 8.83 21.69 0.19 -38.55 16 9 Si 0.99 39.71 29.63 68.60 2.03 41.75 16 10 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 11 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 12 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 13 C 0.44 23.45 7.47 86.54 0.65 24.10 16 14 O -0.62 -39.10 15.98 -4.34 -0.07 -39.17 16 15 C 0.09 3.99 6.53 40.53 0.26 4.26 16 16 C -0.15 -4.68 7.50 22.57 0.17 -4.51 16 17 C -0.04 -0.73 10.04 22.20 0.22 -0.51 16 18 C -0.10 -2.20 10.09 22.45 0.23 -1.97 16 19 C 0.26 8.82 7.88 134.15 1.06 9.88 16 20 N -0.56 -19.77 11.24 -198.17 -2.23 -22.00 16 21 C 0.22 7.82 12.98 180.83 2.35 10.17 16 22 N -0.37 -16.97 12.06 -61.37 -0.74 -17.71 16 23 N -0.28 -11.91 3.91 -181.83 -0.71 -12.62 16 24 H 0.24 5.83 7.80 -4.42 -0.03 5.80 16 25 H 0.11 4.48 6.19 -2.39 -0.01 4.47 16 26 H 0.12 4.13 4.06 -3.03 -0.01 4.12 16 27 H 0.28 12.17 8.31 -92.71 -0.77 11.40 16 28 H 0.20 5.82 2.81 -2.91 -0.01 5.82 16 29 H 0.21 1.62 8.06 -2.91 -0.02 1.59 16 30 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.26 6.33 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -79.93 276.51 6.25 -73.68 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.19 Total: 16.91 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 8.28 Total: 20.30 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -5.18 Total: -113.46 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.07 Total: -39.17 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.75 kcal Total: -79.93 6.25 -73.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491020447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.323 kcal (2) G-P(sol) polarization free energy of solvation -79.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds