Wall clock time and date at job start Mon Mar 30 2020 01:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47496 * 106.77153 * 3 2 1 5 5 C 1.36870 * 120.00234 * 280.30790 * 4 3 2 6 6 H 1.08000 * 119.99579 * 290.00077 * 5 4 3 7 7 C 1.39044 * 120.00246 * 109.99758 * 5 4 3 8 8 N 1.31361 * 120.00068 * 62.59195 * 7 5 4 9 9 Si 1.86797 * 120.00015 * 242.59047 * 7 5 4 10 10 H 1.48504 * 109.46942 * 60.00253 * 9 7 5 11 11 H 1.48499 * 109.47181 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47257 * 300.00244 * 9 7 5 13 13 C 1.34776 * 120.00034 * 100.29954 * 4 3 2 14 14 O 1.21611 * 120.00381 * 191.87792 * 13 4 3 15 15 C 1.47595 * 120.00093 * 11.88131 * 13 4 3 16 16 C 1.40317 * 119.88650 * 320.48034 * 15 13 4 17 17 C 1.36134 * 120.55421 * 179.97438 * 16 15 13 18 18 C 1.39935 * 119.98383 * 0.02562 * 17 16 15 19 19 N 1.34740 * 134.58056 * 179.97438 * 18 17 16 20 20 N 1.28640 * 109.29663 * 180.02562 * 19 18 17 21 21 N 1.28818 * 111.79724 * 0.02562 * 20 19 18 22 22 H 0.97000 * 125.94729 * 180.02562 * 21 20 19 23 23 C 1.37376 * 108.10920 * 359.76296 * 21 20 19 24 24 C 1.38597 * 134.88806 * 179.52859 * 23 21 20 25 25 H 4.40641 * 5.51528 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47488 * 346.77318 * 3 2 1 27 27 H 1.09000 * 109.47301 * 226.77588 * 3 2 1 28 28 H 0.96998 * 120.00179 * 179.97438 * 8 7 5 29 29 H 1.08009 * 119.72123 * 359.97179 * 16 15 13 30 30 H 1.08004 * 120.01047 * 180.02562 * 17 16 15 31 31 H 1.08006 * 120.24309 * 0.72144 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3994 -1.3224 5 6 3.1628 -0.5105 -2.3444 6 1 3.8702 -1.3263 -2.3214 7 6 2.2812 -0.3848 -3.4122 8 7 2.3345 0.6749 -4.1867 9 14 1.0209 -1.7227 -3.7454 10 1 0.1341 -1.8727 -2.5637 11 1 0.2068 -1.3518 -4.9306 12 1 1.7194 -3.0069 -4.0062 13 6 3.5551 1.6624 -1.5327 14 8 3.7547 2.0561 -2.6659 15 6 3.7738 2.5677 -0.3877 16 6 2.8839 2.5507 0.6970 17 6 3.0730 3.3794 1.7604 18 6 4.1618 4.2583 1.7771 19 7 4.6205 5.1793 2.6470 20 7 5.6839 5.7230 2.1691 21 7 5.9939 5.2362 1.0174 22 1 6.7547 5.4968 0.4751 23 6 5.0627 4.2794 0.6936 24 6 4.8614 3.4371 -0.3884 25 1 -1.0501 0.0002 0.0001 26 1 3.0098 -0.9996 0.2351 27 1 3.0090 0.7046 0.7488 28 1 1.7196 0.7624 -4.9318 29 1 2.0418 1.8743 0.6883 30 1 2.3828 3.3587 2.5908 31 1 5.5466 3.4506 -1.2232 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491021543.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:31 Heat of formation + Delta-G solvation = 160.462802 kcal Electronic energy + Delta-G solvation = -19794.779912 eV Core-core repulsion = 16660.232514 eV Total energy + Delta-G solvation = -3134.547398 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.25062 -40.85424 -38.25432 -36.73984 -34.90450 -34.67148 -33.14195 -31.79555 -31.43886 -28.21494 -27.02393 -25.18516 -24.27056 -23.51272 -21.55089 -19.73237 -19.40974 -19.32891 -18.29461 -17.31863 -17.11664 -16.59811 -16.44540 -16.09768 -15.54009 -15.29827 -15.02346 -14.33376 -14.14068 -13.99198 -13.55832 -13.28618 -13.25005 -12.97004 -12.48641 -12.42492 -12.28596 -12.12796 -11.84678 -11.31414 -10.99531 -10.57897 -10.06294 -9.86494 -9.47090 -9.18092 -8.54171 -5.96212 -0.63567 0.11034 1.11520 1.34507 1.46891 1.49525 1.54379 1.85647 2.02485 2.20417 2.36512 2.59691 2.71765 2.94442 3.23272 3.55287 3.75688 3.84514 3.93979 4.05984 4.12729 4.40108 4.60291 4.82769 4.85753 4.91025 5.10705 5.22904 5.29341 5.45231 5.51940 5.88054 6.36321 6.84427 7.08008 7.12202 7.14599 7.53459 8.28164 8.41845 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031652 B = 0.005689 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.401385 B = 4920.701023 C = 5553.481907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.210 4.210 3 C 0.183 3.817 4 N -0.452 5.452 5 C -0.475 4.475 6 H 0.070 0.930 7 C 0.104 3.896 8 N -0.746 5.746 9 Si 0.886 3.114 10 H -0.259 1.259 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.495 3.505 14 O -0.545 6.545 15 C -0.089 4.089 16 C -0.109 4.109 17 C -0.043 4.043 18 C 0.003 3.997 19 N -0.272 5.272 20 N -0.020 5.020 21 N -0.394 5.394 22 H 0.470 0.530 23 C 0.025 3.975 24 C -0.058 4.058 25 H 0.242 0.758 26 H 0.094 0.906 27 H 0.127 0.873 28 H 0.267 0.733 29 H 0.158 0.842 30 H 0.172 0.828 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 4.326 11.000 11.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.211 4.211 3 C 0.061 3.939 4 N -0.174 5.174 5 C -0.596 4.596 6 H 0.087 0.913 7 C -0.120 4.120 8 N -0.368 5.368 9 Si 0.707 3.293 10 H -0.183 1.183 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.284 3.716 14 O -0.424 6.424 15 C -0.096 4.096 16 C -0.130 4.130 17 C -0.065 4.065 18 C -0.122 4.122 19 N -0.149 5.149 20 N -0.002 5.002 21 N -0.126 5.126 22 H 0.320 0.680 23 C -0.095 4.095 24 C -0.081 4.081 25 H 0.258 0.742 26 H 0.112 0.888 27 H 0.144 0.856 28 H 0.078 0.922 29 H 0.175 0.825 30 H 0.190 0.810 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.603 5.700 11.364 12.814 hybrid contribution -0.459 -1.244 -1.974 2.378 sum 1.144 4.456 9.390 10.456 Atomic orbital electron populations 1.25568 0.96686 1.00734 0.99702 1.24083 0.95710 1.00557 1.00768 1.19489 0.83662 1.03159 0.87550 1.43097 1.56775 1.07913 1.09648 1.18130 1.26414 1.10747 1.04311 0.91289 1.26290 0.96761 0.95891 0.93078 1.71128 1.26637 1.31584 1.07425 0.86730 0.81606 0.83304 0.77694 1.18306 1.21491 1.18975 1.19411 0.79612 0.84437 0.88162 1.90778 1.52318 1.74640 1.24628 1.20351 0.96402 0.97009 0.95871 1.21496 1.00037 0.99371 0.92107 1.20164 0.94957 0.91907 0.99501 1.20298 0.99176 1.00200 0.92515 1.75286 1.05261 1.09652 1.24657 1.77841 1.09969 1.17173 0.95190 1.44812 1.24077 1.27712 1.15972 0.67954 1.19549 0.94079 0.96956 0.98949 1.19922 0.98480 0.93624 0.96082 0.74176 0.88803 0.85594 0.92248 0.82464 0.81035 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.70 19.25 74.32 1.43 -5.27 16 2 C -0.21 -7.62 11.86 31.12 0.37 -7.26 16 3 C 0.18 6.73 5.41 84.57 0.46 7.19 16 4 N -0.45 -21.64 2.52 -648.99 -1.64 -23.28 16 5 C -0.48 -25.80 8.48 84.10 0.71 -25.09 16 6 H 0.07 3.86 8.06 -2.91 -0.02 3.83 16 7 C 0.10 5.61 5.32 84.96 0.45 6.06 16 8 N -0.75 -43.02 11.58 21.68 0.25 -42.77 16 9 Si 0.89 39.81 29.69 68.60 2.04 41.85 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 C 0.49 24.07 7.19 86.71 0.62 24.70 16 14 O -0.55 -31.70 14.61 -4.07 -0.06 -31.76 16 15 C -0.09 -3.29 5.45 -20.06 -0.11 -3.40 16 16 C -0.11 -3.31 7.30 22.29 0.16 -3.15 16 17 C -0.04 -1.13 10.03 22.19 0.22 -0.90 16 18 C 0.00 0.10 7.36 39.77 0.29 0.39 16 19 N -0.27 -7.98 12.42 -52.36 -0.65 -8.63 16 20 N -0.02 -0.51 13.28 37.02 0.49 -0.02 16 21 N -0.39 -8.69 7.08 -51.69 -0.37 -9.06 16 22 H 0.47 6.30 8.96 -219.81 -1.97 4.33 16 23 C 0.03 0.70 7.40 39.02 0.29 0.99 16 24 C -0.06 -1.88 9.64 22.60 0.22 -1.66 16 25 H 0.24 5.62 7.80 -4.41 -0.03 5.59 16 26 H 0.09 3.23 8.12 -2.39 -0.02 3.21 16 27 H 0.13 3.87 3.99 -2.39 -0.01 3.86 16 28 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.16 4.70 4.14 -2.91 -0.01 4.69 16 30 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.14 4.42 8.05 -2.91 -0.02 4.39 16 Total: -1.00 -72.41 282.69 4.42 -67.99 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -0.77 Total: 13.08 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.12 Total: -7.40 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.91 Total: -83.75 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.06 Total: -31.76 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.04 Total: 41.85 kcal Total: -72.41 4.42 -67.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491021543.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.448 kcal (2) G-P(sol) polarization free energy of solvation -72.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds